| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-02-23 11:32 -0500 (Mon, 23 Feb 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-01-15 r89304) -- "Unsuffered Consequences" | 4871 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 664/2354 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ELMER 2.35.1 (landing page) Tiago Chedraoui Silva
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for ELMER in R Universe. | ||||||||||||||
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To the developers/maintainers of the ELMER package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ELMER.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ELMER |
| Version: 2.35.1 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELMER |
| StartedAt: 2026-02-22 17:39:34 -0500 (Sun, 22 Feb 2026) |
| EndedAt: 2026-02-22 17:45:17 -0500 (Sun, 22 Feb 2026) |
| EllapsedTime: 343.4 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ELMER ### ############################################################################## ############################################################################## * checking for file ‘ELMER/DESCRIPTION’ ... OK * preparing ‘ELMER’: * checking DESCRIPTION meta-information ... OK * installing the package (it is needed to build vignettes) * creating vignettes ... ERROR --- re-building ‘analysis_data_input.Rmd’ using rmarkdown --- finished re-building ‘analysis_data_input.Rmd’ --- re-building ‘analysis_diff_meth.Rmd’ using rmarkdown --- finished re-building ‘analysis_diff_meth.Rmd’ --- re-building ‘analysis_get_pair.Rmd’ using rmarkdown --- finished re-building ‘analysis_get_pair.Rmd’ --- re-building ‘analysis_gui.Rmd’ using rmarkdown --- finished re-building ‘analysis_gui.Rmd’ --- re-building ‘analysis_motif_enrichment.Rmd’ using rmarkdown --- finished re-building ‘analysis_motif_enrichment.Rmd’ --- re-building ‘analysis_regulatory_tf.Rmd’ using rmarkdown --- finished re-building ‘analysis_regulatory_tf.Rmd’ --- re-building ‘index.Rmd’ using rmarkdown --- finished re-building ‘index.Rmd’ --- re-building ‘input.Rmd’ using rmarkdown Quitting from input.Rmd:245-294 [unnamed-chunk-8] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `readr::write_tsv()`: ! unused argument (path = "sampleMap.tsv") ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'input.Rmd' failed with diagnostics: unused argument (path = "sampleMap.tsv") --- failed re-building ‘input.Rmd’ --- re-building ‘pipe.Rmd’ using rmarkdown --- finished re-building ‘pipe.Rmd’ --- re-building ‘plots_TF.Rmd’ using rmarkdown Warning: ggrepel: 66 unlabeled data points (too many overlaps). Consider increasing max.overlaps --- finished re-building ‘plots_TF.Rmd’ --- re-building ‘plots_heatmap.Rmd’ using rmarkdown --- finished re-building ‘plots_heatmap.Rmd’ --- re-building ‘plots_motif_enrichment.Rmd’ using rmarkdown --- finished re-building ‘plots_motif_enrichment.Rmd’ --- re-building ‘plots_scatter.Rmd’ using rmarkdown --- finished re-building ‘plots_scatter.Rmd’ --- re-building ‘plots_schematic.Rmd’ using rmarkdown --- finished re-building ‘plots_schematic.Rmd’ --- re-building ‘usecase.Rmd’ using rmarkdown --- finished re-building ‘usecase.Rmd’ SUMMARY: processing the following file failed: ‘input.Rmd’ Error: Vignette re-building failed. Execution halted