| Back to Build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-10-23 11:30 -0400 (Thu, 23 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 3809 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 366/2355 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Yuriy Gusev
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
|
To the developers/maintainers of the CINdex package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CINdex.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: CINdex |
| Version: 1.37.2 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex |
| StartedAt: 2025-10-22 22:26:33 -0000 (Wed, 22 Oct 2025) |
| EndedAt: 2025-10-22 22:28:57 -0000 (Wed, 22 Oct 2025) |
| EllapsedTime: 144.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data CINdex
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* checking for file ‘CINdex/DESCRIPTION’ ... OK
* preparing ‘CINdex’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘HowToDownloadCytobandInfo.Rmd’ using rmarkdown
Quitting from HowToDownloadCytobandInfo.Rmd:18-28 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'TxDb.Hsapiens.UCSC.hg18.knownGene'
---
Backtrace:
x
1. \-base::library(TxDb.Hsapiens.UCSC.hg18.knownGene)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'HowToDownloadCytobandInfo.Rmd' failed with diagnostics:
there is no package called 'TxDb.Hsapiens.UCSC.hg18.knownGene'
--- failed re-building ‘HowToDownloadCytobandInfo.Rmd’
--- re-building ‘PrepareInputData.Rmd’ using rmarkdown
Quitting from PrepareInputData.Rmd:32-45 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `library()`:
! there is no package called 'pd.genomewidesnp.6'
---
Backtrace:
x
1. \-base::library(pd.genomewidesnp.6)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'PrepareInputData.Rmd' failed with diagnostics:
there is no package called 'pd.genomewidesnp.6'
--- failed re-building ‘PrepareInputData.Rmd’
--- re-building ‘CINdex.Rnw’ using knitr
--- finished re-building ‘CINdex.Rnw’
SUMMARY: processing the following files failed:
‘HowToDownloadCytobandInfo.Rmd’ ‘PrepareInputData.Rmd’
Error: Vignette re-building failed.
Execution halted