##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CBN2Path.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CBN2Path_1.1.4.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/CBN2Path.Rcheck’
* using R Under development (unstable) (2025-11-04 r88984)
* using platform: aarch64-apple-darwin20
* R was compiled by
    Apple clang version 16.0.0 (clang-1600.0.26.6)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Ventura 13.7.8
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CBN2Path/DESCRIPTION’ ... OK
* this is package ‘CBN2Path’ version ‘1.1.4’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CBN2Path’ can be installed ... WARNING
Found the following significant warnings:
  bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
  bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
See ‘/Users/biocbuild/bbs-3.23-bioc/meat/CBN2Path.Rcheck/00install.out’ for details.
* used C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
  CITATION.cff
Most likely ‘inst/CITATION’ should be used instead.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcbn: no visible global function definition for ‘SnowParam’
bcbn: no visible binding for global variable ‘datasets’
ctcbn: no visible global function definition for ‘SnowParam’
generateGeomNodePoint: no visible binding for global variable ‘nodes’
generateGeomNodeText: no visible binding for global variable ‘nodes’
generateGgText: no visible binding for global variable ‘x’
generateGgText: no visible binding for global variable ‘y’
generateGgText: no visible binding for global variable ‘label’
generateMatrixGenotypes : f1 : <anonymous>: no visible global function
  definition for ‘combn’
hcbn: no visible global function definition for ‘SnowParam’
variableCapSize: no visible binding for global variable ‘edges’
variableCapSize: no visible binding for global variable ‘x’
variableCapSize: no visible binding for global variable ‘y’
visualizeCBNModel: no visible binding for global variable ‘name’
visualizeFitnessLandscape: no visible binding for global variable ‘x’
visualizeFitnessLandscape: no visible binding for global variable ‘y’
visualizeFitnessLandscape: no visible binding for global variable
  ‘name’
visualizeProbabilities: no visible binding for global variable ‘name’
Undefined global functions or variables:
  SnowParam combn datasets edges label name nodes x y
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/CBN2Path/libs/CBN2Path.so’:
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
  Found ‘_abort’, possibly from ‘abort’ (C)
  Found ‘_printf’, possibly from ‘printf’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                          user system elapsed
hcbnSingle              31.018  0.060  31.795
pathProbQuartetBCBN     12.891  0.695  13.711
visualizeProbabilities  10.849  0.052  11.047
bcbn                     5.876  3.165   9.106
jensenShannonDivergence  4.755  0.915   5.739
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.23-bioc/meat/CBN2Path.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CBN2Path
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library’
* installing *source* package ‘CBN2Path’ ...
** this is package ‘CBN2Path’ version ‘1.1.4’
** using staged installation
checking for gcc... clang -arch arm64 -std=gnu2x
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch arm64 -std=gnu2x accepts -g... yes
checking for clang -arch arm64 -std=gnu2x option to enable C11 features... -std=gnu11
checking for gsl-config... /opt/R/arm64/bin/gsl-config
checking if GSL version >= 2.5... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bcbn.c -o bcbn.o
bcbn.c:433:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
bcbn.c:554:36: note: put the semicolon on a separate line to silence this warning
bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
bcbn.c:611:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
bcbn.c:623:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
bcbn.c:633:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:641:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
bcbn.c:931:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
bcbn.c:943:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
bcbn.c:953:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:1056:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,c,k;
        ^
bcbn.c:1056:13: warning: unused variable 'k' [-Wunused-variable]
  int i,j,c,k;
            ^
bcbn.c:1075:10: warning: variable 'p' set but not used [-Wunused-but-set-variable]
  double p = 0;
         ^
bcbn.c:1281:15: warning: unused variable 'likelihood' [-Wunused-variable]
  long double likelihood, likelihood_d;
              ^
bcbn.c:1367:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1367:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1380:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1380:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1449:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1550:11: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,N_all_comp,N_compatible,k;
          ^
bcbn.c:1550:22: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,N_all_comp,N_compatible,k;
                     ^
bcbn.c:1550:35: warning: unused variable 'k' [-Wunused-variable]
  int i,j,N_all_comp,N_compatible,k;
                                  ^
bcbn.c:1675:10: warning: unused variable 'alpha' [-Wunused-variable]
  double alpha,beta,var,x;
         ^
bcbn.c:1675:16: warning: unused variable 'beta' [-Wunused-variable]
  double alpha,beta,var,x;
               ^
bcbn.c:1675:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1675:25: warning: unused variable 'x' [-Wunused-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1755:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1878:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1878:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1878:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1946:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1946:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1946:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1957:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
bcbn.c:1997:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1997:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1997:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:2008:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
bcbn.c:2358:7: warning: unused variable 'i' [-Wunused-variable]
  int i,j,k = 0;
      ^
bcbn.c:2358:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,k = 0;
        ^
bcbn.c:2362:7: warning: unused variable 'accepted' [-Wunused-variable]
  int accepted = 0;
      ^
bcbn.c:2620:22: warning: unused variable 'MH_ratio' [-Wunused-variable]
  long double alpha, MH_ratio;
                     ^
bcbn.c:2630:7: warning: variable 'accepted' set but not used [-Wunused-but-set-variable]
  int accepted = 0;
      ^
bcbn.c:2633:7: warning: variable 'n_edges' set but not used [-Wunused-but-set-variable]
  int n_edges = 0;
      ^
43 warnings generated.
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ctcbn.c -o ctcbn.o
In file included from ctcbn.c:3:
./ct-cbn.h:184:7: warning: unused variable 'j' [-Wunused-variable]
  int j;
      ^
./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
./ct-cbn.h:551:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
./ct-cbn.h:611:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
./ct-cbn.h:670:30: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
./ct-cbn.h:682:43: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
./ct-cbn.h:692:45: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input, "%lf", &x));
                                ^
./ct-cbn.h:719:33: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:803:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
./ct-cbn.h:2721:17: warning: variable 'alpha_new' set but not used [-Wunused-but-set-variable]
  double alpha, alpha_new;
                ^
./ct-cbn.h:3305:7: warning: variable 'mut_next' set but not used [-Wunused-but-set-variable]
  int mut_next, index_next;
      ^
ctcbn.c:79:7: warning: unused variable 'verbose' [-Wunused-variable]
  int verbose = 0;
      ^
ctcbn.c:84:7: warning: unused variable 'GPS' [-Wunused-variable]
  int GPS = 0;
      ^
ctcbn.c:88:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
ctcbn.c:302:7: warning: unused variable 'error_flag' [-Wunused-variable]
  int error_flag = 0;
      ^
ctcbn.c:303:7: warning: unused variable 'f_flag' [-Wunused-variable]
  int f_flag = 0;
      ^
ctcbn.c:304:7: warning: variable 'e_flag' set but not used [-Wunused-but-set-variable]
  int e_flag = 0;
      ^
ctcbn.c:305:7: warning: unused variable 'gps_flag' [-Wunused-variable]
  int gps_flag = 0;
      ^
ctcbn.c:306:7: warning: unused variable 'l_flag' [-Wunused-variable]
  int l_flag = 0;
      ^
ctcbn.c:308:7: warning: unused variable 't_flag' [-Wunused-variable]
  int t_flag = 1;
      ^
ctcbn.c:313:10: warning: unused variable 'T' [-Wunused-variable]
  double T = REAL(temp)[0];
         ^
ctcbn.c:314:7: warning: variable 'N_iter' set but not used [-Wunused-but-set-variable]
  int N_iter = 0;
      ^
ctcbn.c:319:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
22 warnings generated.
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch arm64 -std=gnu2x -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -I.  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c queue.c -o queue.o
clang -arch arm64 -std=gnu2x -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o CBN2Path.so bcbn.o ctcbn.o init.o queue.o -L/opt/R/arm64/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.6-arm64/Resources/library/00LOCK-CBN2Path/00new/CBN2Path/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CBN2Path)

R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: aarch64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(CBN2Path)
> 
> test_check("CBN2Path")
chain: 1
0
chain: 2
0
chain: 3
0
chain: 4
0
       V1               V2                 V3                 V4         
 Min.   :0.1736   Min.   :0.000981   Min.   :0.001079   Min.   :0.02246  
 1st Qu.:0.8102   1st Qu.:0.415957   1st Qu.:0.412982   1st Qu.:0.10494  
 Median :0.9032   Median :0.569760   Median :0.564142   Median :0.13075  
 Mean   :0.8689   Mean   :0.565956   Mean   :0.562426   Mean   :0.13517  
 3rd Qu.:0.9592   3rd Qu.:0.722130   3rd Qu.:0.718228   3rd Qu.:0.16179  
 Max.   :1.0000   Max.   :0.999990   Max.   :0.999970   Max.   :0.34233  
       V5         
 Min.   :-12.363  
 1st Qu.: -8.599  
 Median : -8.192  
 Mean   : -8.312  
 3rd Qu.: -7.899  
 Max.   : -7.429  
       V1               V2                  V3               V4         
 Min.   :0.1096   Min.   :0.0002049   Min.   :0.0015   Min.   :0.01502  
 1st Qu.:0.8057   1st Qu.:0.4156464   1st Qu.:0.4114   1st Qu.:0.10605  
 Median :0.8986   Median :0.5649001   Median :0.5648   Median :0.13318  
 Mean   :0.8652   Mean   :0.5655168   Mean   :0.5614   Mean   :0.13699  
 3rd Qu.:0.9569   3rd Qu.:0.7213434   3rd Qu.:0.7171   3rd Qu.:0.16491  
 Max.   :1.0000   Max.   :0.9998505   Max.   :0.9998   Max.   :0.33869  
       V5         
 Min.   :-13.573  
 1st Qu.: -8.608  
 Median : -8.208  
 Mean   : -8.322  
 3rd Qu.: -7.909  
 Max.   : -7.437  
       V1               V2                  V3                  V4         
 Min.   :0.2108   Min.   :0.0006723   Min.   :0.0004226   Min.   :0.01951  
 1st Qu.:0.8036   1st Qu.:0.4148349   1st Qu.:0.4147039   1st Qu.:0.10385  
 Median :0.8998   Median :0.5689432   Median :0.5658811   Median :0.13112  
 Mean   :0.8657   Mean   :0.5648929   Mean   :0.5626040   Mean   :0.13432  
 3rd Qu.:0.9570   3rd Qu.:0.7184383   3rd Qu.:0.7170033   3rd Qu.:0.16116  
 Max.   :1.0000   Max.   :0.9998334   Max.   :0.9999625   Max.   :0.33041  
       V5         
 Min.   :-13.311  
 1st Qu.: -8.619  
 Median : -8.215  
 Mean   : -8.328  
 3rd Qu.: -7.913  
 Max.   : -7.442  
       V1               V2                  V3                  V4         
 Min.   :0.1874   Min.   :6.619e-05   Min.   :0.0009072   Min.   :0.02651  
 1st Qu.:0.8052   1st Qu.:4.138e-01   1st Qu.:0.4154748   1st Qu.:0.10598  
 Median :0.8975   Median :5.653e-01   Median :0.5693776   Median :0.13175  
 Mean   :0.8650   Mean   :5.641e-01   Mean   :0.5652888   Mean   :0.13600  
 3rd Qu.:0.9560   3rd Qu.:7.186e-01   3rd Qu.:0.7194493   3rd Qu.:0.16281  
 Max.   :1.0000   Max.   :1.000e+00   Max.   :0.9999685   Max.   :0.34918  
       V5         
 Min.   :-13.519  
 1st Qu.: -8.595  
 Median : -8.197  
 Mean   : -8.316  
 3rd Qu.: -7.907  
 Max.   : -7.432  
[1] "Criterion: 1.00069968124982"
Potential scale reduction factors:

     Point est. Upper C.I.
[1,]          1          1
[2,]          1          1
[3,]          1          1
[4,]          1          1
[5,]          1          1

Multivariate psrf

1
[1] "##########################################"
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
 41.459   0.295  42.828