| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2026-03-07 11:33 -0500 (Sat, 07 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4453 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences" | 3376 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2357 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BiocParallel 1.45.0 (landing page) Jiefei Wang
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for BiocParallel in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BiocParallel package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BiocParallel.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BiocParallel |
| Version: 1.45.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel |
| StartedAt: 2026-03-06 15:42:35 -0500 (Fri, 06 Mar 2026) |
| EndedAt: 2026-03-06 15:43:02 -0500 (Fri, 06 Mar 2026) |
| EllapsedTime: 26.3 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BiocParallel
###
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* checking for file ‘BiocParallel/DESCRIPTION’ ... OK
* preparing ‘BiocParallel’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BiocParallel_BatchtoolsParam.Rmd’ using rmarkdown
Quitting from BiocParallel_BatchtoolsParam.Rmd:36-50 [intro_example]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BatchtoolsParam()`:
! BatchtoolsParam() requires 'batchtools' package
---
Backtrace:
▆
1. └─BiocParallel::BatchtoolsParam()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BiocParallel_BatchtoolsParam.Rmd' failed with diagnostics:
BatchtoolsParam() requires 'batchtools' package
--- failed re-building ‘BiocParallel_BatchtoolsParam.Rmd’
--- re-building ‘Errors_Logs_And_Debugging.Rmd’ using rmarkdown
--- finished re-building ‘Errors_Logs_And_Debugging.Rmd’
--- re-building ‘Introduction_To_BiocParallel.Rmd’ using rmarkdown
Quitting from Introduction_To_BiocParallel.Rmd:260-263 [register_BatchtoolsParam]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `BatchtoolsParam()`:
! BatchtoolsParam() requires 'batchtools' package
---
Backtrace:
▆
1. ├─BiocParallel::register(BatchtoolsParam(workers = 10), default = TRUE)
2. │ └─BiocParallel:::.register(BPPARAM, default = default)
3. │ └─base::eval(BPPARAM)
4. └─BiocParallel::BatchtoolsParam(workers = 10)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Introduction_To_BiocParallel.Rmd' failed with diagnostics:
BatchtoolsParam() requires 'batchtools' package
--- failed re-building ‘Introduction_To_BiocParallel.Rmd’
--- re-building ‘Random_Numbers.Rmd’ using rmarkdown
--- finished re-building ‘Random_Numbers.Rmd’
SUMMARY: processing the following files failed:
‘BiocParallel_BatchtoolsParam.Rmd’ ‘Introduction_To_BiocParallel.Rmd’
Error: Vignette re-building failed.
Execution halted