Back to Multiple platform build/check report for BioC 3.23:   simplified   long
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This page was generated on 2026-05-08 11:33 -0400 (Fri, 08 May 2026).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.4 LTS)x86_644.6.0 RC (2026-04-17 r89917) -- "Because it was There" 4992
kjohnson3macOS 13.7.7 Venturaarm644.6.0 Patched (2026-04-24 r89963) -- "Because it was There" 4725
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 189/2418HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioCartaImage 1.10.0  (landing page)
Zuguang Gu
Snapshot Date: 2026-05-07 13:40 -0400 (Thu, 07 May 2026)
git_url: https://git.bioconductor.org/packages/BioCartaImage
git_branch: RELEASE_3_23
git_last_commit: f5e87a6
git_last_commit_date: 2026-04-28 09:01:44 -0400 (Tue, 28 Apr 2026)
nebbiolo1Linux (Ubuntu 24.04.4 LTS) / x86_64  OK    ERROR  skipped
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped
See other builds for BioCartaImage in R Universe.


BUILD results for BioCartaImage on nebbiolo1

To the developers/maintainers of the BioCartaImage package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioCartaImage.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: BioCartaImage
Version: 1.10.0
Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioCartaImage
StartedAt: 2026-05-07 16:32:45 -0400 (Thu, 07 May 2026)
EndedAt: 2026-05-07 16:32:50 -0400 (Thu, 07 May 2026)
EllapsedTime: 5.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioCartaImage
###
##############################################################################
##############################################################################


* checking for file ‘BioCartaImage/DESCRIPTION’ ... OK
* preparing ‘BioCartaImage’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BioCartaImage.Rmd’ using rmarkdown
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
  cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
  cannot find pngquant; please install and put it in PATH

Quitting from BioCartaImage.Rmd:146-150 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! SSL peer certificate or SSH remote key was not OK [data.broadinstitute.org]:
SSL certificate problem: unable to get local issuer certificate
---
Backtrace:
     ▆
  1. ├─BioCartaImage::grid.biocarta("h_RELAPathway", color = c(`1387` = "yellow"))
  2. │ └─BioCartaImage::biocartaGrob(...)
  3. │   └─BioCartaImage::get_pathway_image(pathway$id)
  4. │     └─magick::image_read(url)
  5. │       └─base::vapply(path, replace_url, character(1))
  6. │         └─magick (local) FUN(X[[i]], ...)
  7. │           ├─base::paste0(download_url(path), suffix)
  8. │           └─magick:::download_url(path)
  9. │             └─curl::curl_download(url, tmp, handle = h)
 10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BioCartaImage.Rmd' failed with diagnostics:
SSL peer certificate or SSH remote key was not OK [data.broadinstitute.org]:
SSL certificate problem: unable to get local issuer certificate
--- failed re-building ‘BioCartaImage.Rmd’

SUMMARY: processing the following file failed:
  ‘BioCartaImage.Rmd’

Error: Vignette re-building failed.
Execution halted