| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-05-08 11:33 -0400 (Fri, 08 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4992 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-04-24 r89963) -- "Because it was There" | 4725 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 189/2418 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BioCartaImage 1.10.0 (landing page) Zuguang Gu
| nebbiolo1 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
| See other builds for BioCartaImage in R Universe. | ||||||||||||||
|
To the developers/maintainers of the BioCartaImage package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BioCartaImage.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BioCartaImage |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioCartaImage |
| StartedAt: 2026-05-07 16:32:45 -0400 (Thu, 07 May 2026) |
| EndedAt: 2026-05-07 16:32:50 -0400 (Thu, 07 May 2026) |
| EllapsedTime: 5.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data BioCartaImage
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* checking for file ‘BioCartaImage/DESCRIPTION’ ... OK
* preparing ‘BioCartaImage’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘BioCartaImage.Rmd’ using rmarkdown
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
cannot find pngquant; please install and put it in PATH
Warning in hook_png(..., cmd = "pngquant", post_process = function(x) { :
cannot find pngquant; please install and put it in PATH
Quitting from BioCartaImage.Rmd:146-150 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_download()`:
! SSL peer certificate or SSH remote key was not OK [data.broadinstitute.org]:
SSL certificate problem: unable to get local issuer certificate
---
Backtrace:
▆
1. ├─BioCartaImage::grid.biocarta("h_RELAPathway", color = c(`1387` = "yellow"))
2. │ └─BioCartaImage::biocartaGrob(...)
3. │ └─BioCartaImage::get_pathway_image(pathway$id)
4. │ └─magick::image_read(url)
5. │ └─base::vapply(path, replace_url, character(1))
6. │ └─magick (local) FUN(X[[i]], ...)
7. │ ├─base::paste0(download_url(path), suffix)
8. │ └─magick:::download_url(path)
9. │ └─curl::curl_download(url, tmp, handle = h)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'BioCartaImage.Rmd' failed with diagnostics:
SSL peer certificate or SSH remote key was not OK [data.broadinstitute.org]:
SSL certificate problem: unable to get local issuer certificate
--- failed re-building ‘BioCartaImage.Rmd’
SUMMARY: processing the following file failed:
‘BioCartaImage.Rmd’
Error: Vignette re-building failed.
Execution halted