Multiple platform build/check report for BioC 3.23 - BUILD results for BSgenomeForge on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.3 LTS)	x86_64	R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences"	4453
kjohnson3	macOS 13.7.7 Ventura	arm64	R Under development (unstable) (2026-02-28 r89501) -- "Unsuffered Consequences"	3376
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for BSgenomeForge on kjohnson3

To the developers/maintainers of the BSgenomeForge package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BSgenomeForge.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: BSgenomeForge

Version: 1.11.2

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenomeForge

StartedAt: 2026-03-06 15:44:03 -0500 (Fri, 06 Mar 2026)

EndedAt: 2026-03-06 15:44:26 -0500 (Fri, 06 Mar 2026)

EllapsedTime: 23.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BSgenomeForge
###
##############################################################################
##############################################################################


* checking for file ‘BSgenomeForge/DESCRIPTION’ ... OK
* preparing ‘BSgenomeForge’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘QuickBSgenomeForge.Rmd’ using rmarkdown
trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/009/729/545/GCA_009729545.1_ASM972954v1/GCA_009729545.1_ASM972954v1_genomic.fna.gz'
Content type 'application/x-gzip' length 649859 bytes (634 KB)
==================================================
downloaded 634 KB

trying URL 'https://ftp.ncbi.nlm.nih.gov/genomes/all/GCA/008/369/605/GCA_008369605.1_ASM836960v1/GCA_008369605.1_ASM836960v1_genomic.fna.gz'
Content type 'application/x-gzip' length 1227167 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

trying URL 'https://hgdownload.soe.ucsc.edu/goldenPath/wuhCor1/bigZips/wuhCor1.2bit'
Content type 'unknown' length 7524 bytes
==================================================
downloaded 7524 bytes


Quitting from QuickBSgenomeForge.Rmd:141-143 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `loadNamespace()`:
! there is no package called 'devtools'
---
Backtrace:
    ▆
 1. └─base::loadNamespace(x)
 2.   └─base::withRestarts(stop(cond), retry_loadNamespace = function() NULL)
 3.     └─base (local) withOneRestart(expr, restarts[[1L]])
 4.       └─base (local) doWithOneRestart(return(expr), restart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'QuickBSgenomeForge.Rmd' failed with diagnostics:
there is no package called 'devtools'
--- failed re-building ‘QuickBSgenomeForge.Rmd’

--- re-building ‘AdvancedBSgenomeForge.Rnw’ using Sweave
--- finished re-building ‘AdvancedBSgenomeForge.Rnw’

SUMMARY: processing the following file failed:
  ‘QuickBSgenomeForge.Rmd’

Error: Vignette re-building failed.
Execution halted