| Back to Build/check report for BioC 3.22 experimental data |
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This page was generated on 2025-08-28 15:41 -0400 (Thu, 28 Aug 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4822 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 226/431 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | ||||||||
| mammaPrintData 1.45.0 (landing page) Luigi Marchionni
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | ||||||||
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To the developers/maintainers of the mammaPrintData package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: mammaPrintData |
| Version: 1.45.0 |
| Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mammaPrintData |
| StartedAt: 2025-08-28 11:31:54 -0400 (Thu, 28 Aug 2025) |
| EndedAt: 2025-08-28 12:37:51 -0400 (Thu, 28 Aug 2025) |
| EllapsedTime: 3957.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data mammaPrintData
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* checking for file ‘mammaPrintData/DESCRIPTION’ ... OK
* preparing ‘mammaPrintData’:
* checking DESCRIPTION meta-information ... OK
* checking whether ‘INDEX’ is up-to-date ... NO
* use ‘--force’ to remove the existing ‘INDEX’
* installing the package to build vignettes
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# Bootstrapping renv 0.17.3 --------------------------------------------------
* Downloading renv 0.17.3 ... OK
* Installing renv 0.17.3 ... Done!
* Successfully installed and loaded renv 0.17.3.
ℹ Using R 4.5.1 (lockfile was generated with R 4.2.3)
Error: package 'BiocManager' is not available
In addition: Warning messages:
1: In value[[3L]](cond) : restarting interrupted promise evaluation
2: error downloading 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/PACKAGES.rds' [curl: (22) The requested URL returned error: 504curl: (22) The requested URL returned error: 504curl: (22) The requested URL returned error: 504curl: (22) The requested URL returned error: 504]
Traceback (most recent calls last):
21: source("renv/activate.R")
20: withVisible(eval(ei, envir))
19: eval(ei, envir)
18: eval(ei, envir)
17: local(...)
16: eval.parent(substitute(eval(quote(expr), envir)))
15: eval(expr, p)
14: eval(expr, p)
13: eval(quote(...), new.env())
12: eval(quote(...), new.env())
11: renv::load()
10: renv_load_bioconductor(project, lockfile$Bioconductor)
9: renv_bioconductor_init()
8: renv_bioconductor_init_biocmanager(library)
7: install("BiocManager", library = library)
6: retrieve(names(remotes))
5: handler(package, renv_retrieve_impl(package))
4: renv_retrieve_impl(package)
3: renv_available_packages_latest(package)
2: stopf("package '%s' is not available", package)
1: stop(sprintf(fmt, ...), call. = call.)
Execution halted
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ERROR: package installation failed