Back to Build/check report for BioC 3.22 experimental data
ABCDEFGHIJKLMNOPQRS[T]UVWXYZ

This page was generated on 2025-09-16 15:41 -0400 (Tue, 16 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" 4727
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 407/432HostnameOS / ArchINSTALLBUILDCHECK
TimerQuant 1.39.0  (landing page)
Joseph Barry
Snapshot Date: 2025-09-16 07:30 -0400 (Tue, 16 Sep 2025)
git_url: https://git.bioconductor.org/packages/TimerQuant
git_branch: devel
git_last_commit: 23a5364
git_last_commit_date: 2025-04-15 10:03:48 -0400 (Tue, 15 Apr 2025)
nebbiolo2Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for TimerQuant on nebbiolo2

To the developers/maintainers of the TimerQuant package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: TimerQuant
Version: 1.39.0
Command: /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TimerQuant
StartedAt: 2025-09-16 11:46:29 -0400 (Tue, 16 Sep 2025)
EndedAt: 2025-09-16 11:46:40 -0400 (Tue, 16 Sep 2025)
EllapsedTime: 11.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.22-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data TimerQuant
###
##############################################################################
##############################################################################


* checking for file ‘TimerQuant/DESCRIPTION’ ... OK
* preparing ‘TimerQuant’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘genPaperFigures.Rnw’ using knitr

Quitting from genPaperFigures.Rnw:49-76 [fig1b]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! <ggplot2::labels> object is invalid:
- every label must be named.
---
Backtrace:
    x
 1. \-ggplot2::labs(list(linetype = "half-life", color = "fluorophore"))
 2.   \-ggplot2::class_labels(args)
 3.     \-S7::new_object(labels)
 4.       \-S7::validate(object, recursive = !parent_validated)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'genPaperFigures.Rnw' failed with diagnostics:
<ggplot2::labels> object is invalid:
- every label must be named.
--- failed re-building ‘genPaperFigures.Rnw’

--- re-building ‘mathematicalDerivations.Rnw’ using knitr
--- finished re-building ‘mathematicalDerivations.Rnw’

SUMMARY: processing the following file failed:
  ‘genPaperFigures.Rnw’

Error: Vignette re-building failed.
Execution halted