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This page was generated on 2025-07-24 09:37 -0400 (Thu, 24 Jul 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 (2025-04-11) -- "How About a Twenty-Six" 914
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Package 92/229HostnameOS / ArchINSTALLBUILDCHECK
flowWorkspace 4.21.0  (landing page)
Greg Finak , Mike Jiang
Snapshot Date: 2025-07-24 06:00 -0400 (Thu, 24 Jul 2025)
git_url: https://git.bioconductor.org/packages/flowWorkspace
git_branch: devel
git_last_commit: 1457874
git_last_commit_date: 2025-04-15 10:08:27 -0400 (Tue, 15 Apr 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for flowWorkspace on teran2

To the developers/maintainers of the flowWorkspace package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowWorkspace
Version: 4.21.0
Command: /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowWorkspace
StartedAt: 2025-07-24 06:46:10 -0400 (Thu, 24 Jul 2025)
EndedAt: 2025-07-24 06:47:59 -0400 (Thu, 24 Jul 2025)
EllapsedTime: 108.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/rapidbuild/bbs-3.22-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data flowWorkspace
###
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* checking for file ‘flowWorkspace/DESCRIPTION’ ... OK
* preparing ‘flowWorkspace’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToMergeGatingSet.Rmd’ using rmarkdown
--- finished re-building ‘HowToMergeGatingSet.Rmd’

--- re-building ‘flowWorkspace-Introduction.Rmd’ using rmarkdown

Quitting from flowWorkspace-Introduction.Rmd:90-93 [autoplot-nodeName]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
     ▆
  1. ├─ggplot2::autoplot(gs, node)
  2. └─ggcyto:::autoplot.GatingSet(gs, node)
  3.   ├─ggcyto::ggcyto(object, mapping, ...)
  4.   └─ggcyto:::ggcyto.GatingSet(object, mapping, ...)
  5.     └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
  6.       ├─p + ggcyto_par_default()
  7.       └─p + ggcyto_par_default()
  8.         └─ggcyto:::add_ggcyto(e1, e2, e2name)
  9.           ├─e1 + e2.new
 10.           └─e1 + e2.new
 11.             └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'flowWorkspace-Introduction.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘flowWorkspace-Introduction.Rmd’

SUMMARY: processing the following file failed:
  ‘flowWorkspace-Introduction.Rmd’

Error: Vignette re-building failed.
Execution halted