Back to Build/check report for BioC 3.22:   simplified   long
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1647/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
profileScoreDist 1.37.0  (landing page)
Paal O. Westermark
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/profileScoreDist
git_branch: devel
git_last_commit: 787df8f
git_last_commit_date: 2025-04-15 10:57:01 -0400 (Tue, 15 Apr 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for profileScoreDist on kjohnson3

To the developers/maintainers of the profileScoreDist package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/profileScoreDist.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: profileScoreDist
Version: 1.37.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data profileScoreDist
StartedAt: 2025-10-26 17:35:05 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 17:35:13 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 8.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data profileScoreDist
###
##############################################################################
##############################################################################


* checking for file ‘profileScoreDist/DESCRIPTION’ ... OK
* preparing ‘profileScoreDist’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘profileScoreDist-vignette.Rmd’ using rmarkdown
! Undefined control sequence.
l.171 ... Rahmann, Müller, and Vingron (\citeproc
                                                  {ref-rahmann_power_2003}{2...

Error: processing vignette 'profileScoreDist-vignette.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpxeIH39/Rbuild4a7f54f19589/profileScoreDist/vignettes/profileScoreDist-vignette.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See profileScoreDist-vignette.log for more info.
--- failed re-building ‘profileScoreDist-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘profileScoreDist-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted