Sebastian Canzler
| Snapshot Date: 2025-11-17 13:45 -0500 (Mon, 17 Nov 2025) |
| git_url: https://git.bioconductor.org/packages/multiGSEA |
| git_branch: RELEASE_3_22 |
| git_last_commit: 89609e9 |
| git_last_commit_date: 2025-10-29 11:00:17 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-11-20 12:07 -0500 (Thu, 20 Nov 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4615 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble" | 4610 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4598 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4668 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1415/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| multiGSEA 1.20.0 (landing page) Sebastian Canzler
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | TIMEOUT | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the multiGSEA package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/multiGSEA.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: multiGSEA |
| Version: 1.20.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data multiGSEA |
| StartedAt: 2025-11-18 03:31:38 -0000 (Tue, 18 Nov 2025) |
| EndedAt: 2025-11-18 03:34:06 -0000 (Tue, 18 Nov 2025) |
| EllapsedTime: 148.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data multiGSEA
###
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* checking for file ‘multiGSEA/DESCRIPTION’ ... OK
* preparing ‘multiGSEA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘multiGSEA.rmd’ using rmarkdown
Quitting from multiGSEA.rmd:271-282 [calculate_enrichment]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `fetchRemote()`:
! cannot download pathway data: are you offline?
---
Backtrace:
▆
1. └─multiGSEA::getMultiOmicsFeatures(...)
2. └─base::lapply(...)
3. └─multiGSEA (local) FUN(X[[i]], ...)
4. └─graphite::pathways(organism, x)
5. └─graphite:::loadData(paste(species, database, sep = "-"))
6. └─graphite:::withArchiveDir(...)
7. └─graphite (local) func(path)
8. └─graphite:::fetchRemote(name, path)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'multiGSEA.rmd' failed with diagnostics:
cannot download pathway data: are you offline?
--- failed re-building ‘multiGSEA.rmd’
SUMMARY: processing the following file failed:
‘multiGSEA.rmd’
Error: Vignette re-building failed.
Execution halted