Till Soerensen
| Snapshot Date: 2026-01-12 13:45 -0500 (Mon, 12 Jan 2026) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2026-01-15 11:59 -0500 (Thu, 15 Jan 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4886 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4672 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2026-01-13 02:32:17 -0000 (Tue, 13 Jan 2026) |
| EndedAt: 2026-01-13 02:35:53 -0000 (Tue, 13 Jan 2026) |
| EllapsedTime: 216.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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### Running command:
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### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
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* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=150<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>26
Model Refinement takes 0 mins(max 1: 0)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=97) has 3 sub-cluster at 3 (9), ICL=109<>30
split 2 into 3 clusters
cluster 1(N=205) has 2 sub-cluster at 2 (8), ICL=24<>30
cluster 1(N=205) has 2 sub-cluster at 2 (8), ICL=0<>30
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 1(N=428) has 2 sub-cluster at 2 (5), ICL=48<>34
split 1 into 2 clusters
cluster 3(N=57) has 2 sub-cluster at 3 (29), ICL=34<>34
cluster 4(N=72) has 4 sub-cluster at 5 (24), ICL=18<>34
cluster 2(N=50) has 3 sub-cluster at 3 (17), ICL=15<>34
cluster 1(N=428) has 2 sub-cluster at 2 (5), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 7 iterations
cluster 4(N=117) has 2 sub-cluster at 2 (30), ICL=64<>37
split 4 into 2 clusters
cluster 3(N=115) has 2 sub-cluster at 2 (100), ICL=51<>37
split 3 into 2 clusters
cluster 2(N=60) has 2 sub-cluster at 2 (10), ICL=25<>37
cluster 5(N=148) has 2 sub-cluster at 2 (11), ICL=18<>37
cluster 2(N=60) has 2 sub-cluster at 2 (10), ICL=0<>37
Model Refinement takes 0.067 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->7 N=2420
EM 6 takes 0.017 mins, 6 iterations
cluster 2(N=100) has 3 sub-cluster at 3 (13), ICL=45<>41
split 2 into 3 clusters
cluster 3(N=228) has 2 sub-cluster at 2 (9), ICL=37<>41
cluster 5(N=111) has 7 sub-cluster at 7 (33), ICL=23<>41
cluster 4(N=151) has 3 sub-cluster at 3 (11), ICL=20<>41
cluster 6(N=283) has 2 sub-cluster at 2 (6), ICL=15<>41
cluster 2(N=100) has 3 sub-cluster at 3 (13), ICL=0<>41
Model Refinement takes 0.13 mins(max 1: 0.033)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 11 iterations
cluster 5(N=501) has 2 sub-cluster at 2 (10), ICL=92<>45
split 5 into 2 clusters
cluster 3(N=71) has 3 sub-cluster at 3 (19), ICL=56<>45
split 3 into 3 clusters
cluster 8(N=591) has 2 sub-cluster at 2 (6), ICL=49<>45
split 8 into 2 clusters
cluster 6(N=272) has 3 sub-cluster at 3 (6), ICL=29<>45
cluster 7(N=195) has 3 sub-cluster at 3 (8), ICL=22<>45
cluster 4(N=32) has 3 sub-cluster at 3 (13), ICL=14<>45
cluster 2(N=145) has 7 sub-cluster at 8 (25), ICL=11<>45
cluster 2(N=145) has 7 sub-cluster at 8 (25), ICL=0<>45
Model Refinement takes 0.18 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=8->12 N=9682
EM 11 takes 0 mins, 5 iterations
cluster 8(N=557) has 3 sub-cluster at 3 (11), ICL=65<>48
split 8 into 3 clusters
cluster 9(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 6(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 11(N=394) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 4(N=30) has 3 sub-cluster at 3 (8), ICL=17<>48
cluster 3(N=98) has 4 sub-cluster at 4 (32), ICL=15<>48
cluster 2(N=314) has 5 sub-cluster at 6 (41), ICL=1.3<>48
cluster 5(N=75) has 4 sub-cluster at 5 (26), ICL=0.9<>48
cluster 2(N=314) has 5 sub-cluster at 6 (41), ICL=0<>48
Model Refinement takes 0.25 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->13 N=9682
EM 13 takes 0 mins, 4 iterations
cluster 11(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 6(N=898) has 3 sub-cluster at 3 (8), ICL=36<>48
cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 13(N=395) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 10(N=87) has 2 sub-cluster at 2 (14), ICL=18<>48
cluster 3(N=98) has 5 sub-cluster at 6 (35), ICL=14<>48
cluster 8(N=362) has 6 sub-cluster at 7 (25), ICL=14<>48
cluster 5(N=74) has 3 sub-cluster at 4 (43), ICL=13<>48
cluster 9(N=180) has 6 sub-cluster at 8 (29), ICL=8.3<>48
cluster 2(N=307) has 2 sub-cluster at 2 (7), ICL=6.8<>48
cluster 4(N=31) has 2 sub-cluster at 2 (16), ICL=6.4<>48
cluster 2(N=307) has 2 sub-cluster at 2 (7), ICL=0<>48
Model Refinement takes 0.28 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=13->13 N=9682
EM 13 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.1 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=150<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (11), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 11 iterations
cluster 2(N=94) has 3 sub-cluster at 3 (9), ICL=118<>25
split 2 into 3 clusters
cluster 1(N=210) has 7 sub-cluster at 7 (24), ICL=23<>25
cluster 1(N=210) has 7 sub-cluster at 7 (24), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 11 iterations
cluster 4(N=49) has 2 sub-cluster at 2 (12), ICL=26<>28
cluster 2(N=60) has 4 sub-cluster at 4 (31), ICL=24<>28
cluster 1(N=429) has 3 sub-cluster at 3 (9), ICL=19<>28
cluster 3(N=69) has 2 sub-cluster at 2 (7), ICL=17<>28
cluster 1(N=429) has 3 sub-cluster at 3 (9), ICL=0<>28
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 3 of (6/10) K=4->4 N=1210
EM 4 takes 0 mins, 6 iterations
cluster 4(N=134) has 2 sub-cluster at 2 (8), ICL=81<>31
split 4 into 2 clusters
cluster 2(N=118) has 7 sub-cluster at 7 (39), ICL=36<>31
split 2 into 7 clusters
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=4->11 N=2420
EM 9 takes 0.017 mins, 31 iterations
cluster 1(N=1682) has 2 sub-cluster at 2 (5), ICL=208<>34
split 1 into 2 clusters
cluster 7(N=259) has 2 sub-cluster at 2 (9), ICL=38<>34
split 7 into 2 clusters
cluster 6(N=99) has 6 sub-cluster at 8 (51), ICL=36<>34
split 6 into 6 clusters
cluster 4(N=11) has 2 sub-cluster at 2 (100), ICL=29<>34
cluster 9(N=150) has 7 sub-cluster at 7 (26), ICL=22<>34
cluster 3(N=107) has 5 sub-cluster at 5 (23), ICL=18<>34
cluster 8(N=99) has 2 sub-cluster at 2 (11), ICL=17<>34
cluster 2(N=39) has 3 sub-cluster at 3 (18), ICL=16<>34
cluster 1(N=1682) has 2 sub-cluster at 2 (5), ICL=0<>34
Model Refinement takes 0.13 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=9->16 N=4841
EM 12 takes 0.017 mins, 21 iterations
cluster 1(N=246) has 2 sub-cluster at 2 (8), ICL=130<>37
split 1 into 2 clusters
cluster 7(N=31) has 3 sub-cluster at 3 (43), ICL=40<>37
split 7 into 3 clusters
cluster 12(N=279) has 3 sub-cluster at 3 (6), ICL=31<>37
cluster 11(N=194) has 8 sub-cluster at 8 (47), ICL=22<>37
cluster 4(N=309) has 5 sub-cluster at 6 (49), ICL=19<>37
cluster 10(N=208) has 2 sub-cluster at 3 (36), ICL=18<>37
cluster 6(N=135) has 5 sub-cluster at 8 (67), ICL=8.6<>37
cluster 8(N=21) has 2 sub-cluster at 2 (19), ICL=7.3<>37
cluster 3(N=22) has 2 sub-cluster at 2 (100), ICL=3.1<>37
cluster 1(N=246) has 2 sub-cluster at 2 (8), ICL=0<>37
Model Refinement takes 0.22 mins(max 2: 0.067)
Fit Model 6 of (6/10) K=12->15 N=9682
EM 12 takes 0.033 mins, 16 iterations
cluster 2(N=192) has 2 sub-cluster at 2 (6), ICL=117<>40
split 2 into 2 clusters
cluster 12(N=554) has 3 sub-cluster at 3 (9), ICL=66<>40
split 12 into 3 clusters
cluster 11(N=391) has 5 sub-cluster at 5 (29), ICL=36<>40
cluster 10(N=371) has 2 sub-cluster at 3 (6), ICL=17<>40
cluster 4(N=50) has 2 sub-cluster at 2 (14), ICL=14<>40
cluster 5(N=403) has 2 sub-cluster at 2 (9), ICL=13<>40
cluster 8(N=30) has 2 sub-cluster at 2 (12), ICL=12<>40
cluster 1(N=311) has 2 sub-cluster at 2 (7), ICL=9.8<>40
cluster 3(N=6250) has 3 sub-cluster at 3 (7), ICL=3.3<>40
cluster 1(N=311) has 2 sub-cluster at 2 (7), ICL=0<>40
Model Refinement takes 0.28 mins(max 3: 0.067)
Fit Model 7 of (6/10) K=12->15 N=9682
EM 15 takes 0.017 mins, 4 iterations
cluster 12(N=391) has 2 sub-cluster at 2 (10), ICL=41<>40
split 12 into 2 clusters
cluster 2(N=122) has 3 sub-cluster at 3 (14), ICL=25<>40
cluster 14(N=166) has 6 sub-cluster at 7 (47), ICL=23<>40
cluster 15(N=79) has 2 sub-cluster at 2 (7), ICL=18<>40
cluster 11(N=377) has 2 sub-cluster at 2 (7), ICL=18<>40
cluster 6(N=398) has 2 sub-cluster at 2 (10), ICL=16<>40
cluster 5(N=50) has 2 sub-cluster at 2 (14), ICL=14<>40
cluster 3(N=73) has 4 sub-cluster at 5 (15), ICL=13<>40
cluster 13(N=366) has 8 sub-cluster at 8 (23), ICL=12<>40
cluster 9(N=29) has 2 sub-cluster at 2 (10), ICL=11<>40
cluster 1(N=307) has 2 sub-cluster at 2 (7), ICL=9.4<>40
cluster 1(N=307) has 2 sub-cluster at 2 (7), ICL=0<>40
Model Refinement takes 0.32 mins(max 4: 0.067)
Fit Model 8 of (6/10) K=15->16 N=9682
EM 16 takes 0 mins, 3 iterations
cluster 2(N=122) has 3 sub-cluster at 3 (14), ICL=25<>40
cluster 12(N=218) has 2 sub-cluster at 2 (11), ICL=20<>40
cluster 16(N=81) has 7 sub-cluster at 7 (62), ICL=19<>40
cluster 11(N=378) has 2 sub-cluster at 2 (11), ICL=19<>40
cluster 6(N=397) has 2 sub-cluster at 2 (10), ICL=17<>40
cluster 5(N=50) has 2 sub-cluster at 2 (14), ICL=14<>40
cluster 3(N=73) has 4 sub-cluster at 5 (15), ICL=13<>40
cluster 15(N=165) has 7 sub-cluster at 8 (42), ICL=13<>40
cluster 13(N=227) has 7 sub-cluster at 8 (27), ICL=12<>40
cluster 14(N=371) has 4 sub-cluster at 4 (15), ICL=12<>40
cluster 9(N=28) has 2 sub-cluster at 2 (11), ICL=11<>40
cluster 1(N=306) has 2 sub-cluster at 2 (7), ICL=9.4<>40
cluster 1(N=306) has 2 sub-cluster at 2 (7), ICL=0<>40
Model Refinement takes 0.33 mins(max 4: 0.067)
Fit Model 9 of (6/10) K=16->16 N=9682
EM 16 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted