Till Soerensen
| Snapshot Date: 2025-12-08 13:45 -0500 (Mon, 08 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_22 |
| git_last_commit: 3c4237c |
| git_last_commit_date: 2025-10-29 10:24:29 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.22: simplified long |
|
This page was generated on 2025-12-11 12:07 -0500 (Thu, 11 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4879 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble" | 4670 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble" | 4604 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4669 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1051/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.42.0 (landing page) Till Soerensen
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.42.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-12-09 03:33:24 -0000 (Tue, 09 Dec 2025) |
| EndedAt: 2025-12-09 03:37:01 -0000 (Tue, 09 Dec 2025) |
| EllapsedTime: 217.1 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=149<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (9), ICL=0<>26
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 12 iterations
cluster 2(N=84) has 2 sub-cluster at 2 (7), ICL=106<>30
split 2 into 2 clusters
cluster 1(N=219) has 2 sub-cluster at 2 (6), ICL=37<>30
split 1 into 2 clusters
cluster 1(N=219) has 2 sub-cluster at 2 (6), ICL=0<>30
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 12 iterations
cluster 3(N=76) has 2 sub-cluster at 2 (7), ICL=90<>34
split 3 into 2 clusters
cluster 2(N=54) has 2 sub-cluster at 2 (8), ICL=56<>34
split 2 into 2 clusters
cluster 1(N=402) has 2 sub-cluster at 2 (7), ICL=19<>34
cluster 4(N=78) has 4 sub-cluster at 4 (20), ICL=12<>34
cluster 1(N=402) has 2 sub-cluster at 2 (7), ICL=0<>34
Model Refinement takes 0.05 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=4->6 N=1210
EM 6 takes 0 mins, 10 iterations
cluster 4(N=105) has 2 sub-cluster at 2 (100), ICL=64<>37
split 4 into 2 clusters
cluster 5(N=55) has 3 sub-cluster at 3 (22), ICL=23<>37
cluster 2(N=71) has 3 sub-cluster at 3 (23), ICL=16<>37
cluster 6(N=156) has 5 sub-cluster at 5 (35), ICL=13<>37
cluster 1(N=814) has 3 sub-cluster at 3 (10), ICL=13<>37
cluster 3(N=12) has 2 sub-cluster at 2 (100), ICL=6<>37
cluster 1(N=814) has 3 sub-cluster at 3 (10), ICL=0<>37
Model Refinement takes 0.083 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 6 takes 0.017 mins, 10 iterations
cluster 4(N=251) has 2 sub-cluster at 2 (8), ICL=72<>41
split 4 into 2 clusters
cluster 3(N=49) has 3 sub-cluster at 3 (11), ICL=30<>41
cluster 6(N=260) has 3 sub-cluster at 3 (14), ICL=24<>41
cluster 5(N=97) has 6 sub-cluster at 6 (15), ICL=19<>41
cluster 2(N=133) has 4 sub-cluster at 4 (19), ICL=18<>41
cluster 1(N=1642) has 4 sub-cluster at 4 (6), ICL=1.4<>41
cluster 1(N=1642) has 4 sub-cluster at 4 (6), ICL=0<>41
Model Refinement takes 0.12 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->7 N=4841
EM 7 takes 0.017 mins, 6 iterations
cluster 3(N=94) has 2 sub-cluster at 2 (6), ICL=59<>45
split 3 into 2 clusters
cluster 7(N=570) has 2 sub-cluster at 2 (6), ICL=52<>45
split 7 into 2 clusters
cluster 2(N=300) has 4 sub-cluster at 4 (15), ICL=35<>45
cluster 6(N=195) has 6 sub-cluster at 6 (25), ICL=25<>45
cluster 4(N=428) has 3 sub-cluster at 3 (20), ICL=23<>45
cluster 1(N=3253) has 4 sub-cluster at 4 (8), ICL=15<>45
cluster 5(N=31) has 2 sub-cluster at 2 (100), ICL=3<>45
cluster 1(N=3253) has 4 sub-cluster at 4 (8), ICL=0<>45
Model Refinement takes 0.15 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=7->9 N=9682
EM 9 takes 0.017 mins, 4 iterations
cluster 1(N=6478) has 3 sub-cluster at 3 (8), ICL=79<>48
split 1 into 3 clusters
cluster 2(N=556) has 3 sub-cluster at 3 (7), ICL=61<>48
split 2 into 3 clusters
cluster 7(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 6(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 5(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 4(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 8(N=464) has 2 sub-cluster at 2 (6), ICL=21<>48
cluster 3(N=75) has 3 sub-cluster at 4 (12), ICL=4.8<>48
cluster 1(N=6478) has 3 sub-cluster at 3 (8), ICL=0<>48
Model Refinement takes 0.22 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=9->13 N=9682
EM 13 takes 0.033 mins, 19 iterations
cluster 9(N=897) has 2 sub-cluster at 2 (26), ICL=54<>48
split 9 into 2 clusters
cluster 11(N=391) has 2 sub-cluster at 2 (7), ICL=51<>48
split 11 into 2 clusters
cluster 10(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 8(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 6(N=89) has 2 sub-cluster at 2 (6), ICL=17<>48
cluster 7(N=73) has 3 sub-cluster at 4 (21), ICL=13<>48
cluster 12(N=419) has 3 sub-cluster at 3 (6), ICL=11<>48
cluster 4(N=370) has 5 sub-cluster at 5 (17), ICL=11<>48
cluster 5(N=171) has 4 sub-cluster at 5 (36), ICL=7.2<>48
cluster 3(N=306) has 2 sub-cluster at 2 (10), ICL=5.1<>48
cluster 3(N=306) has 2 sub-cluster at 2 (10), ICL=0<>48
Model Refinement takes 0.32 mins(max 1: 0.05)
Fit Model 8 of (6/10) K=13->15 N=9682
EM 15 takes 0.017 mins, 4 iterations
cluster 11(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 8(N=123) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 7(N=73) has 5 sub-cluster at 5 (41), ICL=26<>48
cluster 14(N=417) has 2 sub-cluster at 3 (4), ICL=18<>48
cluster 6(N=88) has 2 sub-cluster at 2 (7), ICL=18<>48
cluster 4(N=371) has 4 sub-cluster at 4 (19), ICL=16<>48
cluster 13(N=89) has 4 sub-cluster at 4 (16), ICL=14<>48
cluster 12(N=337) has 8 sub-cluster at 8 (48), ICL=11<>48
cluster 5(N=170) has 4 sub-cluster at 5 (54), ICL=9.2<>48
cluster 3(N=305) has 6 sub-cluster at 6 (62), ICL=7.5<>48
cluster 3(N=305) has 6 sub-cluster at 6 (62), ICL=0<>48
Model Refinement takes 0.35 mins(max 2: 0.067)
Fit Model 9 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.5 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=152<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (10), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 2(N=86) has 2 sub-cluster at 2 (6), ICL=126<>25
split 2 into 2 clusters
cluster 1(N=218) has 2 sub-cluster at 2 (10), ICL=21<>25
cluster 1(N=218) has 2 sub-cluster at 2 (10), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->3 N=605
EM 3 takes 0 mins, 9 iterations
cluster 2(N=135) has 2 sub-cluster at 2 (5), ICL=108<>28
split 2 into 2 clusters
cluster 1(N=420) has 2 sub-cluster at 2 (11), ICL=59<>28
split 1 into 2 clusters
cluster 3(N=54) has 2 sub-cluster at 2 (100), ICL=13<>28
cluster 1(N=420) has 2 sub-cluster at 2 (11), ICL=0<>28
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=3->5 N=1210
EM 5 takes 0 mins, 10 iterations
cluster 3(N=109) has 2 sub-cluster at 2 (7), ICL=68<>31
split 3 into 2 clusters
cluster 2(N=53) has 2 sub-cluster at 2 (16), ICL=30<>31
cluster 5(N=112) has 5 sub-cluster at 5 (27), ICL=20<>31
cluster 4(N=148) has 8 sub-cluster at 8 (37), ICL=18<>31
cluster 2(N=53) has 2 sub-cluster at 2 (16), ICL=0<>31
Model Refinement takes 0.067 mins(max 1: 0.017)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 7 iterations
cluster 2(N=121) has 3 sub-cluster at 3 (8), ICL=69<>34
split 2 into 3 clusters
cluster 6(N=244) has 2 sub-cluster at 2 (9), ICL=64<>34
split 6 into 2 clusters
cluster 3(N=110) has 8 sub-cluster at 8 (83), ICL=34<>34
split 3 into 8 clusters
Model Refinement takes 0.12 mins(max 1: 0.05)
Fit Model 5 of (6/10) K=6->16 N=4841
EM 15 takes 0.017 mins, 23 iterations
cluster 6(N=15) has 2 sub-cluster at 2 (100), ICL=64<>37
split 6 into 2 clusters
cluster 3(N=76) has 7 sub-cluster at 7 (27), ICL=33<>37
cluster 10(N=25) has 2 sub-cluster at 2 (100), ICL=29<>37
cluster 8(N=73) has 3 sub-cluster at 3 (20), ICL=23<>37
cluster 12(N=291) has 4 sub-cluster at 4 (7), ICL=22<>37
cluster 15(N=39) has 2 sub-cluster at 2 (5), ICL=20<>37
cluster 13(N=522) has 2 sub-cluster at 2 (6), ICL=18<>37
cluster 5(N=36) has 3 sub-cluster at 3 (18), ICL=14<>37
cluster 9(N=19) has 2 sub-cluster at 2 (5), ICL=11<>37
cluster 14(N=464) has 8 sub-cluster at 8 (19), ICL=9.3<>37
cluster 2(N=158) has 3 sub-cluster at 5 (42), ICL=7.2<>37
cluster 7(N=52) has 3 sub-cluster at 3 (73), ICL=5.3<>37
cluster 2(N=158) has 3 sub-cluster at 5 (42), ICL=0<>37
Model Refinement takes 0.22 mins(max 1: 0.05)
Fit Model 6 of (6/10) K=15->16 N=9682
EM 11 takes 0.033 mins, 8 iterations
cluster 8(N=553) has 3 sub-cluster at 3 (14), ICL=69<>40
split 8 into 3 clusters
cluster 10(N=916) has 3 sub-cluster at 3 (8), ICL=49<>40
split 10 into 3 clusters
cluster 3(N=153) has 2 sub-cluster at 2 (10), ICL=38<>40
cluster 9(N=1116) has 2 sub-cluster at 2 (7), ICL=23<>40
cluster 6(N=269) has 7 sub-cluster at 8 (51), ICL=16<>40
cluster 7(N=92) has 5 sub-cluster at 6 (19), ICL=15<>40
cluster 5(N=124) has 5 sub-cluster at 7 (44), ICL=14<>40
cluster 4(N=71) has 4 sub-cluster at 5 (13), ICL=7.8<>40
cluster 2(N=326) has 6 sub-cluster at 7 (35), ICL=1.7<>40
cluster 2(N=326) has 6 sub-cluster at 7 (35), ICL=0<>40
Model Refinement takes 0.27 mins(max 1: 0.067)
Fit Model 7 of (6/10) K=11->15 N=9682
EM 15 takes 0.017 mins, 4 iterations
cluster 3(N=154) has 4 sub-cluster at 4 (15), ICL=35<>40
cluster 11(N=1116) has 2 sub-cluster at 2 (7), ICL=23<>40
cluster 4(N=70) has 4 sub-cluster at 4 (44), ICL=18<>40
cluster 10(N=76) has 2 sub-cluster at 2 (10), ICL=18<>40
cluster 6(N=256) has 7 sub-cluster at 7 (40), ICL=16<>40
cluster 8(N=361) has 4 sub-cluster at 4 (15), ICL=16<>40
cluster 9(N=163) has 6 sub-cluster at 8 (29), ICL=14<>40
cluster 7(N=88) has 5 sub-cluster at 6 (29), ICL=14<>40
cluster 5(N=135) has 5 sub-cluster at 7 (24), ICL=12<>40
cluster 2(N=320) has 2 sub-cluster at 2 (8), ICL=11<>40
cluster 15(N=52) has 2 sub-cluster at 2 (9), ICL=10<>40
cluster 14(N=71) has 2 sub-cluster at 2 (100), ICL=7.8<>40
cluster 12(N=383) has 7 sub-cluster at 8 (36), ICL=3.5<>40
cluster 2(N=320) has 2 sub-cluster at 2 (8), ICL=0<>40
Model Refinement takes 0.3 mins(max 1: 0.067)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.2 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted