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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1042/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
igvShiny 1.5.0  (landing page)
Arkadiusz Gladki
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/igvShiny
git_branch: devel
git_last_commit: f315896
git_last_commit_date: 2025-04-15 13:27:32 -0400 (Tue, 15 Apr 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for igvShiny on kjohnson3

To the developers/maintainers of the igvShiny package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/igvShiny.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: igvShiny
Version: 1.5.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igvShiny
StartedAt: 2025-10-26 16:54:01 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 16:54:13 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 12.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igvShiny
###
##############################################################################
##############################################################################


* checking for file ‘igvShiny/DESCRIPTION’ ... OK
* preparing ‘igvShiny’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘igvShiny.Rmd’ using rmarkdown

Quitting from igvShiny.Rmd:82-84 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! SSL connect error [igv.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
---
Backtrace:
     ▆
  1. ├─igvShiny::get_css_genomes()
  2. │ ├─httr::http_error(current.genomes.file)
  3. │ └─httr:::http_error.character(current.genomes.file)
  4. │   ├─httr::http_error(HEAD(x, ...))
  5. │   └─httr::HEAD(x, ...)
  6. │     └─httr:::request_perform(req, hu$handle$handle)
  7. │       ├─httr:::request_fetch(req$output, req$url, handle)
  8. │       └─httr:::request_fetch.write_memory(req$output, req$url, handle)
  9. │         └─curl::curl_fetch_memory(url, handle = handle)
 10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'igvShiny.Rmd' failed with diagnostics:
SSL connect error [igv.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
--- failed re-building ‘igvShiny.Rmd’

SUMMARY: processing the following file failed:
  ‘igvShiny.Rmd’

Error: Vignette re-building failed.
Execution halted