Multiple platform build/check report for BioC 3.22 - BUILD results for igblastr on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.1 LTS)	x86_64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4795
palomino8	Windows Server 2022 Datacenter	x64	4.5.0 (2025-04-11 ucrt) -- "How About a Twenty-Six"	4536
lconway	macOS 12.7.1 Monterey	x86_64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4574
kjohnson3	macOS 13.7.1 Ventura	arm64	4.5.0 Patched (2025-04-21 r88169) -- "How About a Twenty-Six"	4513
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4479
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for igblastr on taishan

To the developers/maintainers of the igblastr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/igblastr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: igblastr

Version: 0.99.5

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr

StartedAt: 2025-06-06 01:04:36 -0000 (Fri, 06 Jun 2025)

EndedAt: 2025-06-06 01:05:05 -0000 (Fri, 06 Jun 2025)

EllapsedTime: 29.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr
###
##############################################################################
##############################################################################


* checking for file ‘igblastr/DESCRIPTION’ ... OK
* preparing ‘igblastr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘igblastr_overview.Rmd’ using rmarkdown

Quitting from igblastr_overview.Rmd:110-113 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.stop_on_no_precompiled_ncbi_igblast()`:
! No pre-compiled IgBLAST program available at
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ for Linux-aarch64.
  If there's an existing IgBLAST installation on your machine, please set
  environment variable IGBLAST_ROOT to point to it. Otherwise, please perform
  your own installation of IgBLAST e.g. by downloading and compiling the latest
  source tarball from
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ (note that
  compilation can take between 45 min and 1 hour!), then point IGBLAST_ROOT to
  it. See '?IGBLAST_ROOT' for more information.
---
Backtrace:
    ▆
 1. └─igblastr::install_igblast()
 2.   └─igblastr:::.get_precompiled_ncbi_igblast_name(ftp_dir, OS_arch)
 3.     └─igblastr:::.stop_on_no_precompiled_ncbi_igblast(ftp_dir, OS_arch)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'igblastr_overview.Rmd' failed with diagnostics:
No pre-compiled IgBLAST program available at
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ for Linux-aarch64.
  If there's an existing IgBLAST installation on your machine, please set
  environment variable IGBLAST_ROOT to point to it. Otherwise, please perform
  your own installation of IgBLAST e.g. by downloading and compiling the latest
  source tarball from
  ftp.ncbi.nih.gov/blast/executables/igblast/release/LATEST/ (note that
  compilation can take between 45 min and 1 hour!), then point IGBLAST_ROOT to
  it. See '?IGBLAST_ROOT' for more information.
--- failed re-building ‘igblastr_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘igblastr_overview.Rmd’

Error: Vignette re-building failed.
Execution halted