Build/check report for BioC 3.22 - BUILD results for hpar on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4637
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for hpar on kjohnson3

To the developers/maintainers of the hpar package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hpar.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: hpar

Version: 1.51.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hpar

StartedAt: 2025-10-26 16:52:21 -0400 (Sun, 26 Oct 2025)

EndedAt: 2025-10-26 16:52:47 -0400 (Sun, 26 Oct 2025)

EllapsedTime: 26.3 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data hpar
###
##############################################################################
##############################################################################


* checking for file ‘hpar/DESCRIPTION’ ... OK
* preparing ‘hpar’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘hpar.Rmd’ using rmarkdown

Quitting from hpar.Rmd:224-226 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `h()`:
! error in evaluating the argument 'x' in selecting a method for function 'head': failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [bioconductor.org]:
Connection timed out after 10002 milliseconds
  Consider rerunning with 'localHub=TRUE'
---
Backtrace:
     ▆
  1. ├─utils::head(normtissue <- hpaNormalTissue())
  2. ├─ExperimentHub (local) hpaNormalTissue()
  3. │ └─ExperimentHub:::.get_ExperimentHub()
  4. │   └─ExperimentHub::ExperimentHub()
  5. │     └─AnnotationHub::.Hub(...)
  6. │       └─base::tryCatch(...)
  7. │         └─base (local) tryCatchList(expr, classes, parentenv, handlers)
  8. │           └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
  9. │             └─value[[3L]](cond)
 10. │               └─base::stop(...)
 11. └─base::.handleSimpleError(...)
 12.   └─base (local) h(simpleError(msg, call))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'hpar.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'head': failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! Timeout was reached [bioconductor.org]:
Connection timed out after 10002 milliseconds
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘hpar.Rmd’

SUMMARY: processing the following file failed:
  ‘hpar.Rmd’

Error: Vignette re-building failed.
Execution halted