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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 868/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
getDEE2 1.19.3  (landing page)
Mark 0000-0002-7688-6974 Ziemann
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/getDEE2
git_branch: devel
git_last_commit: b4c8cc5
git_last_commit_date: 2025-06-11 20:28:20 -0400 (Wed, 11 Jun 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for getDEE2 on kjohnson3

To the developers/maintainers of the getDEE2 package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/getDEE2.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: getDEE2
Version: 1.19.3
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data getDEE2
StartedAt: 2025-10-26 16:36:45 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 16:37:26 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 40.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data getDEE2
###
##############################################################################
##############################################################################


* checking for file ‘getDEE2/DESCRIPTION’ ... OK
* preparing ‘getDEE2’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘getDEE2.Rmd’ using rmarkdown
trying URL 'http://dee2.io/metadata/celegans_metadata.tsv.cut'

Quitting from getDEE2.Rmd:70-73 [getmeta]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `getURL()`:
! 'getURL()' failed:
  URL: http://dee2.io/metadata/celegans_metadata.tsv.cut
  error: cannot open URL 'http://dee2.io/metadata/celegans_metadata.tsv.cut'
---
Backtrace:
    ▆
 1. └─getDEE2::getDEE2Metadata("celegans")
 2.   └─getDEE2:::getURL(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getDEE2.Rmd' failed with diagnostics:
'getURL()' failed:
  URL: http://dee2.io/metadata/celegans_metadata.tsv.cut
  error: cannot open URL 'http://dee2.io/metadata/celegans_metadata.tsv.cut'
--- failed re-building ‘getDEE2.Rmd’

SUMMARY: processing the following file failed:
  ‘getDEE2.Rmd’

Error: Vignette re-building failed.
Execution halted