Multiple platform build/check report for BioC 3.22 - BUILD results for flowPloidy on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4615
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble"	4610
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4598
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for flowPloidy on kjohnson1

To the developers/maintainers of the flowPloidy package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowPloidy.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: flowPloidy

Version: 1.36.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy

StartedAt: 2025-11-17 21:15:39 -0500 (Mon, 17 Nov 2025)

EndedAt: 2025-11-17 21:15:52 -0500 (Mon, 17 Nov 2025)

EllapsedTime: 13.1 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowPloidy
###
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* checking for file ‘flowPloidy/DESCRIPTION’ ... OK
* preparing ‘flowPloidy’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘flowPloidy-gettingStarted.Rmd’ using rmarkdown
! LaTeX Error: Lonely \item--perhaps a missing list environment.

Error: processing vignette 'flowPloidy-gettingStarted.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T/Rtmp5pPAPN/Rbuildfd5eb8a079e/flowPloidy/vignettes/flowPloidy-gettingStarted.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See flowPloidy-gettingStarted.log for more info.
--- failed re-building ‘flowPloidy-gettingStarted.Rmd’

--- re-building ‘histogram-tour.Rmd’ using rmarkdown
! Undefined control sequence.
l.126 \pandocbounded
                    {\includegraphics[keepaspectratio]{/private/var/folders/...

Error: processing vignette 'histogram-tour.Rmd' failed with diagnostics:
LaTeX failed to compile /private/var/folders/dc/2xck8b8s0_3gymbxnrltzxhm0000gs/T/Rtmp5pPAPN/Rbuildfd5eb8a079e/flowPloidy/vignettes/histogram-tour.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See histogram-tour.log for more info.
--- failed re-building ‘histogram-tour.Rmd’

SUMMARY: processing the following files failed:
  ‘flowPloidy-gettingStarted.Rmd’ ‘histogram-tour.Rmd’

Error: Vignette re-building failed.
Execution halted