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This page was generated on 2025-10-25 12:05 -0400 (Sat, 25 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root" | 4901 |
| lconway | macOS 12.7.6 Monterey | x86_64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4691 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| taishan | Linux (openEuler 24.03 LTS) | aarch64 | 4.5.0 (2025-04-11) -- "How About a Twenty-Six" | 4658 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 371/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Likun Wang
| nebbiolo2 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| lconway | macOS 12.7.6 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| taishan | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | NA | NA | ||||||||||
|
To the developers/maintainers of the cisPath package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cisPath.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: cisPath |
| Version: 1.49.1 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cisPath |
| StartedAt: 2025-10-24 15:59:14 -0400 (Fri, 24 Oct 2025) |
| EndedAt: 2025-10-24 15:59:18 -0400 (Fri, 24 Oct 2025) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data cisPath
###
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* checking for file ‘cisPath/DESCRIPTION’ ... OK
* preparing ‘cisPath’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
-----------------------------------
* installing *source* package ‘cisPath’ ...
** this is package ‘cisPath’ version ‘1.49.1’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.1.0.2.5)’
using SDK: ‘MacOSX11.3.1.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c cisPath.cpp -o cisPath.o
cisPath.cpp:714:9: warning: variable 'lineCount' set but not used [-Wunused-but-set-variable]
int lineCount = 1;
^
cisPath.cpp:945:14: warning: explicitly assigning value of variable of type 'string' (aka 'basic_string<char, char_traits<char>, allocator<char>>') to itself [-Wself-assign-overloaded]
Name = Name;
~~~~ ^ ~~~~
cisPath.cpp:3555:27: warning: format string is not a string literal (potentially insecure) [-Wformat-security]
PRINTFUNCTION(buffer);
^~~~~~
cisPath.cpp:3555:27: note: treat the string as an argument to avoid this
PRINTFUNCTION(buffer);
^
"%s",
3 warnings generated.
clang++ -arch arm64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o cisPath.so cisPath.o -F/Library/Frameworks/R.framework/.. -framework R
installing to /private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpNmIqIe/Rinst93875c2feb43/00LOCK-cisPath/00new/cisPath/libs
** R
Error in .install_package_code_files(".", instdir) :
files in '/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpNmIqIe/Rbuild9387320c42f/cisPath/R' missing from 'Collate' field:
zzz.R
ERROR: unable to collate and parse R files for package ‘cisPath’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpNmIqIe/Rinst93875c2feb43/cisPath’
-----------------------------------
ERROR: package installation failed