Multiple platform build/check report for BioC 3.22 - BUILD results for biobtreeR on taishan

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4898
lconway	macOS 12.7.6 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4688
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4634
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4658
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for biobtreeR on taishan

To the developers/maintainers of the biobtreeR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biobtreeR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results

Summary

Package: biobtreeR

Version: 1.21.0

Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data biobtreeR

StartedAt: 2025-10-20 22:13:29 -0000 (Mon, 20 Oct 2025)

EndedAt: 2025-10-20 22:13:58 -0000 (Mon, 20 Oct 2025)

EllapsedTime: 29.0 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data biobtreeR
###
##############################################################################
##############################################################################


* checking for file ‘biobtreeR/DESCRIPTION’ ... OK
* preparing ‘biobtreeR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘biobtreeR.Rmd’ using rmarkdown
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
trying URL 'https://github.com/tamerh/biobtree/releases/download/v1.8.0/biobtree_Linux_64bit.tar.gz'
Content type 'application/octet-stream' length 11081624 bytes (10.6 MB)
==================================================
downloaded 10.6 MB

biobtree
sh: line 1: /home/biocbuild/tmp/RtmpqcHFdn/biobtree: cannot execute binary file: Exec format error

Quitting from biobtreeR.Rmd:66-68 [unnamed-chunk-4]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `tryCatchList()`:
! Built data couldn't found. Make sure data built or directory set correctly
---
Backtrace:
    ▆
 1. └─biobtreeR::bbStart()
 2.   └─base::tryCatch(...)
 3.     └─base (local) tryCatchList(expr, classes, parentenv, handlers)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'biobtreeR.Rmd' failed with diagnostics:
Built data couldn't found. Make sure data built or directory set correctly
--- failed re-building ‘biobtreeR.Rmd’

SUMMARY: processing the following file failed:
  ‘biobtreeR.Rmd’

Error: Vignette re-building failed.
Execution halted