Multiple platform build/check report for BioC 3.22 - BUILD results for SEraster on kjohnson1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"	4615
merida1	macOS 12.7.6 Monterey	x86_64	4.5.2 Patched (2025-11-05 r88990) -- "[Not] Part in a Rumble"	4610
kjohnson1	macOS 13.7.5 Ventura	arm64	4.5.2 Patched (2025-11-04 r88984) -- "[Not] Part in a Rumble"	4598
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4668
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for SEraster on kjohnson1

To the developers/maintainers of the SEraster package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SEraster.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: SEraster

Version: 1.2.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SEraster

StartedAt: 2025-11-18 00:53:34 -0500 (Tue, 18 Nov 2025)

EndedAt: 2025-11-18 00:54:45 -0500 (Tue, 18 Nov 2025)

EllapsedTime: 71.4 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SEraster
###
##############################################################################
##############################################################################


* checking for file ‘SEraster/DESCRIPTION’ ... OK
* preparing ‘SEraster’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘getting-started-with-SEraster.Rmd’ using rmarkdown
2025-11-18 00:53:50.299 R[54638:3823111] XType: Using static font registry.

Quitting from getting-started-with-SEraster.Rmd:253-257 [unnamed-chunk-20]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! BiocParallel errors
  1 remote errors, element index: 76
  79 unevaluated and other errors
  first remote error:
Error in BRISC_estimation(coords = coords, y = y_i, x = X, cov.model = "exponential", : c++ error: dpotrf failed

---
Backtrace:
    ▆
 1. └─nnSVG::nnSVG(rastGexp, assay_name = "pixelval")
 2.   ├─BiocParallel::bplapply(...)
 3.   └─BiocParallel::bplapply(...)
 4.     └─BiocParallel:::.bpinit(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'getting-started-with-SEraster.Rmd' failed with diagnostics:
BiocParallel errors
  1 remote errors, element index: 76
  79 unevaluated and other errors
  first remote error:
Error in BRISC_estimation(coords = coords, y = y_i, x = X, cov.model = "exponential", : c++ error: dpotrf failed


--- failed re-building ‘getting-started-with-SEraster.Rmd’

SUMMARY: processing the following file failed:
  ‘getting-started-with-SEraster.Rmd’

Error: Vignette re-building failed.
Execution halted