Build/check report for BioC 3.22 - BUILD results for RNAmodR.ML on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4637
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for RNAmodR.ML on kjohnson3

To the developers/maintainers of the RNAmodR.ML package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/RNAmodR.ML.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: RNAmodR.ML

Version: 1.23.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAmodR.ML

StartedAt: 2025-10-26 17:46:08 -0400 (Sun, 26 Oct 2025)

EndedAt: 2025-10-26 17:46:55 -0400 (Sun, 26 Oct 2025)

EllapsedTime: 47.6 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data RNAmodR.ML
###
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* checking for file ‘RNAmodR.ML/DESCRIPTION’ ... OK
* preparing ‘RNAmodR.ML’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘RNAmodR.ML.Rmd’ using rmarkdown

Quitting from RNAmodR.ML.Rmd:133-139 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `value[[3L]]()`:
! failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
  Consider rerunning with 'localHub=TRUE'
---
Backtrace:
     ▆
  1. ├─rtracklayer::GFF3File(RNAmodR.Data.example.gff3())
  2. │ └─rtracklayer::GFFFile(resource, "3")
  3. │   └─methods::new(gffFileClass(version), resource = resource)
  4. │     ├─methods::initialize(value, ...)
  5. │     └─methods::initialize(value, ...)
  6. └─ExperimentHub (local) RNAmodR.Data.example.gff3()
  7.   └─ExperimentHub:::.get_ExperimentHub()
  8.     └─ExperimentHub::ExperimentHub()
  9.       └─AnnotationHub::.Hub(...)
 10.         └─base::tryCatch(...)
 11.           └─base (local) tryCatchList(expr, classes, parentenv, handlers)
 12.             └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
 13.               └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'RNAmodR.ML.Rmd' failed with diagnostics:
failed to connect
  reason: Failed to perform HTTP request.
Caused by error in `curl::curl_fetch_memory()`:
! SSL connect error [bioconductor.org]:
TLS connect error: error:00000000:lib(0):func(0):reason(0)
  Consider rerunning with 'localHub=TRUE'
--- failed re-building ‘RNAmodR.ML.Rmd’

SUMMARY: processing the following file failed:
  ‘RNAmodR.ML.Rmd’

Error: Vignette re-building failed.
Execution halted