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###
### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicDataCommons
###
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* checking for file ‘GenomicDataCommons/DESCRIPTION’ ... OK
* preparing ‘GenomicDataCommons’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘overview.Rmd’ using rmarkdown

Quitting from overview.Rmd:109-111 [statusQS]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [api.gdc.cancer.gov]:
Resolving timed out after 10002 milliseconds
---
Backtrace:
    ▆
 1. ├─GenomicDataCommons::status()
 2. │ └─GenomicDataCommons:::.gdc_get(...)
 3. │   └─httr::GET(uri, add_headers(`X-Auth-Token` = token), ...)
 4. │     └─httr:::request_perform(req, hu$handle$handle)
 5. │       ├─httr:::request_fetch(req$output, req$url, handle)
 6. │       └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 7. │         └─curl::curl_fetch_memory(url, handle = handle)
 8. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'overview.Rmd' failed with diagnostics:
Timeout was reached [api.gdc.cancer.gov]:
Resolving timed out after 10002 milliseconds
--- failed re-building ‘overview.Rmd’

--- re-building ‘questions-and-answers.Rmd’ using rmarkdown

Quitting from questions-and-answers.Rmd:31-38 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Could not resolve hostname [api.gdc.cancer.gov]:
Could not resolve host: api.gdc.cancer.gov
---
Backtrace:
     ▆
  1. ├─GenomicDataCommons::filter(...)
  2. ├─GenomicDataCommons::files()
  3. │ └─GenomicDataCommons::query("files", ...)
  4. │   ├─base::structure(...)
  5. │   ├─GenomicDataCommons::default_fields(entity)
  6. │   └─GenomicDataCommons:::default_fields.character(entity)
  7. │     ├─base::subset(mapping(x), defaults)
  8. │     └─GenomicDataCommons::mapping(x)
  9. │       └─GenomicDataCommons:::.get_mapping_json(endpoint)
 10. │         └─GenomicDataCommons:::.gdc_get(sprintf("%s/%s", endpoint, "_mapping"))
 11. │           └─httr::GET(uri, add_headers(`X-Auth-Token` = token), ...)
 12. │             └─httr:::request_perform(req, hu$handle$handle)
 13. │               ├─httr:::request_fetch(req$output, req$url, handle)
 14. │               └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 15. │                 └─curl::curl_fetch_memory(url, handle = handle)
 16. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'questions-and-answers.Rmd' failed with diagnostics:
Could not resolve hostname [api.gdc.cancer.gov]:
Could not resolve host: api.gdc.cancer.gov
--- failed re-building ‘questions-and-answers.Rmd’

--- re-building ‘somatic_mutations.Rmd’ using rmarkdown

Quitting from somatic_mutations.Rmd:31-33 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Could not resolve hostname [api.gdc.cancer.gov]:
Could not resolve host: api.gdc.cancer.gov
---
Backtrace:
     ▆
  1. ├─GenomicDataCommons::grep_fields("genes", "symbol")
  2. │ ├─base::grep(...)
  3. │ │ └─base::is.factor(x)
  4. │ ├─GenomicDataCommons::available_fields(entity)
  5. │ └─GenomicDataCommons:::available_fields.character(entity)
  6. │   └─GenomicDataCommons::mapping(x)
  7. │     └─GenomicDataCommons:::.get_mapping_json(endpoint)
  8. │       └─GenomicDataCommons:::.gdc_get(sprintf("%s/%s", endpoint, "_mapping"))
  9. │         └─httr::GET(uri, add_headers(`X-Auth-Token` = token), ...)
 10. │           └─httr:::request_perform(req, hu$handle$handle)
 11. │             ├─httr:::request_fetch(req$output, req$url, handle)
 12. │             └─httr:::request_fetch.write_memory(req$output, req$url, handle)
 13. │               └─curl::curl_fetch_memory(url, handle = handle)
 14. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'somatic_mutations.Rmd' failed with diagnostics:
Could not resolve hostname [api.gdc.cancer.gov]:
Could not resolve host: api.gdc.cancer.gov
--- failed re-building ‘somatic_mutations.Rmd’

SUMMARY: processing the following files failed:
  ‘overview.Rmd’ ‘questions-and-answers.Rmd’ ‘somatic_mutations.Rmd’

Error: Vignette re-building failed.
Execution halted