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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
kjohnson3macOS 13.7.7 Venturaarm644.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" 4637
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 886/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GIGSEA 1.27.0  (landing page)
Shijia Zhu
Snapshot Date: 2025-10-26 13:45 -0400 (Sun, 26 Oct 2025)
git_url: https://git.bioconductor.org/packages/GIGSEA
git_branch: devel
git_last_commit: 27c32bd
git_last_commit_date: 2025-04-15 11:34:21 -0400 (Tue, 15 Apr 2025)
kjohnson3macOS 13.7.7 Ventura / arm64  OK    ERROR  skippedskipped

BUILD results for GIGSEA on kjohnson3

To the developers/maintainers of the GIGSEA package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GIGSEA.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: GIGSEA
Version: 1.27.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GIGSEA
StartedAt: 2025-10-26 16:38:18 -0400 (Sun, 26 Oct 2025)
EndedAt: 2025-10-26 16:41:48 -0400 (Sun, 26 Oct 2025)
EllapsedTime: 210.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GIGSEA
###
##############################################################################
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* checking for file ‘GIGSEA/DESCRIPTION’ ... OK
* preparing ‘GIGSEA’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘GIGSEA_tutorial.Rmd’ using rmarkdown

Quitting from GIGSEA_tutorial.Rmd:261-299 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `file()`:
! cannot open the connection to 'http://amp.pharm.mssm.edu/CREEDS/download/single_drug_perturbations-v1.0.gmt'
---
Backtrace:
    x
 1. \-base::readLines(...)
 2.   \-base::file(con, "r")
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'GIGSEA_tutorial.Rmd' failed with diagnostics:
cannot open the connection to 'http://amp.pharm.mssm.edu/CREEDS/download/single_drug_perturbations-v1.0.gmt'
--- failed re-building ‘GIGSEA_tutorial.Rmd’

SUMMARY: processing the following file failed:
  ‘GIGSEA_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted