Back to Build/check report for BioC 3.22:   simplified   long
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2025-11-13 11:55 -0500 (Thu, 13 Nov 2025).

HostnameOSArch (*)R versionInstalled pkgs
taishanLinux (openEuler 24.03 LTS)aarch644.5.0 (2025-04-11) -- "How About a Twenty-Six" 4668
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 794/2361HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
GBScleanR 2.4.0  (landing page)
Tomoyuki Furuta
Snapshot Date: 2025-11-12 13:45 -0500 (Wed, 12 Nov 2025)
git_url: https://git.bioconductor.org/packages/GBScleanR
git_branch: RELEASE_3_22
git_last_commit: 9667f46
git_last_commit_date: 2025-10-29 11:14:15 -0500 (Wed, 29 Oct 2025)
taishanLinux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for GBScleanR on taishan

To the developers/maintainers of the GBScleanR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/GBScleanR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: GBScleanR
Version: 2.4.0
Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GBScleanR
StartedAt: 2025-11-11 01:49:15 -0000 (Tue, 11 Nov 2025)
EndedAt: 2025-11-11 01:50:36 -0000 (Tue, 11 Nov 2025)
EllapsedTime: 80.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data GBScleanR
###
##############################################################################
##############################################################################


* checking for file ‘GBScleanR/DESCRIPTION’ ... OK
* preparing ‘GBScleanR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘BasicUsageOfGBScleanR.rmd’ using rmarkdown

Quitting from BasicUsageOfGBScleanR.rmd:107-109 [unnamed-chunk-8]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `seqOptimize()`:
! unused argument (gdsfn = gds$filename)
---
Backtrace:
    ▆
 1. └─GBScleanR::loadGDS(gds_fn, verbose = FALSE)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'BasicUsageOfGBScleanR.rmd' failed with diagnostics:
unused argument (gdsfn = gds$filename)
--- failed re-building ‘BasicUsageOfGBScleanR.rmd’

SUMMARY: processing the following file failed:
  ‘BasicUsageOfGBScleanR.rmd’

Error: Vignette re-building failed.
Execution halted