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This page was generated on 2025-10-27 12:45 -0400 (Mon, 27 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root" | 4637 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 620/2361 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| Doscheda 1.31.0 (landing page) Bruno Contrino
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | ||||||||
|
To the developers/maintainers of the Doscheda package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/Doscheda.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: Doscheda |
| Version: 1.31.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Doscheda |
| StartedAt: 2025-10-26 16:18:22 -0400 (Sun, 26 Oct 2025) |
| EndedAt: 2025-10-26 16:19:05 -0400 (Sun, 26 Oct 2025) |
| EllapsedTime: 43.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data Doscheda
###
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* checking for file ‘Doscheda/DESCRIPTION’ ... OK
* preparing ‘Doscheda’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Doscheda.Rmd’ using rmarkdown
Quitting from Doscheda.Rmd:147-150 [fitModelEx]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `curl::curl_fetch_memory()`:
! Timeout was reached [www.humanmine.org]:
Resolving timed out after 10002 milliseconds
---
Backtrace:
▆
1. ├─Doscheda::runNormalisation(ex)
2. ├─Doscheda::runNormalisation(ex)
3. │ └─Doscheda:::normalize_data(...)
4. │ └─Doscheda:::uniprotGene(organism)
5. │ └─httr::POST(...)
6. │ └─httr:::request_perform(req, hu$handle$handle)
7. │ ├─httr:::request_fetch(req$output, req$url, handle)
8. │ └─httr:::request_fetch.write_memory(req$output, req$url, handle)
9. │ └─curl::curl_fetch_memory(url, handle = handle)
10. └─curl:::raise_libcurl_error(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Doscheda.Rmd' failed with diagnostics:
Timeout was reached [www.humanmine.org]:
Resolving timed out after 10002 milliseconds
--- failed re-building ‘Doscheda.Rmd’
SUMMARY: processing the following file failed:
‘Doscheda.Rmd’
Error: Vignette re-building failed.
Execution halted