##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:CBN2Path.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings CBN2Path_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.22-bioc/meat/CBN2Path.Rcheck’
* using R version 4.5.2 (2025-10-31)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘CBN2Path/DESCRIPTION’ ... OK
* this is package ‘CBN2Path’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  .BBSoptions
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘CBN2Path’ can be installed ... WARNING
Found the following significant warnings:
  bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
  bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
  ./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
See ‘/Users/biocbuild/bbs-3.22-bioc/meat/CBN2Path.Rcheck/00install.out’ for details.
* used C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.1.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file in a non-standard place:
  CITATION.cff
Most likely ‘inst/CITATION’ should be used instead.
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
bcbn: no visible global function definition for ‘SnowParam’
bcbn: no visible binding for global variable ‘datasets’
ctcbn: no visible global function definition for ‘SnowParam’
generateGeomNodePoint: no visible binding for global variable ‘nodes’
generateGeomNodeText: no visible binding for global variable ‘nodes’
generateGgText: no visible binding for global variable ‘x’
generateGgText: no visible binding for global variable ‘y’
generateGgText: no visible binding for global variable ‘label’
generateMatrixGenotypes : f1 : <anonymous>: no visible global function
  definition for ‘combn’
hcbn: no visible global function definition for ‘SnowParam’
variableCapSize: no visible binding for global variable ‘edges’
variableCapSize: no visible binding for global variable ‘x’
variableCapSize: no visible binding for global variable ‘y’
visualizeCBNModel: no visible binding for global variable ‘name’
visualizeFitnessLandscape: no visible binding for global variable ‘x’
visualizeFitnessLandscape: no visible binding for global variable ‘y’
visualizeFitnessLandscape: no visible binding for global variable
  ‘name’
visualizeProbabilities: no visible binding for global variable ‘name’
Undefined global functions or variables:
  SnowParam combn datasets edges label name nodes x y
Consider adding
  importFrom("utils", "combn")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
File ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/CBN2Path/libs/CBN2Path.so’:
  Found ‘___stderrp’, possibly from ‘stderr’ (C)
  Found ‘___stdoutp’, possibly from ‘stdout’ (C)
  Found ‘_abort’, possibly from ‘abort’ (C)
  Found ‘_printf’, possibly from ‘printf’ (C)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual.
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                           user system elapsed
hcbnSingle              100.723  0.448 106.426
pathProbQuartetBCBN      80.595  3.400  88.942
visualizeProbabilities   76.745  0.341  81.352
bcbn                     42.237 23.920  68.126
jensenShannonDivergence  19.645  4.482  25.831
pathProbQuartetRCBN      17.556  4.956  39.291
Predictability           17.094  2.390  20.578
pathProbQuartetHCBN      12.457  4.098  17.488
pathProbQuartetCTCBN     11.549  3.483  15.898
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 4 NOTEs
See
  ‘/Users/biocbuild/bbs-3.22-bioc/meat/CBN2Path.Rcheck/00check.log’
for details.

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL CBN2Path
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘CBN2Path’ ...
** this is package ‘CBN2Path’ version ‘1.0.0’
** using staged installation
checking for gcc... clang -arch x86_64
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang -arch x86_64 accepts -g... yes
checking for clang -arch x86_64 option to enable C11 features... none needed
checking for gsl-config... /usr/local/bin/gsl-config
checking if GSL version >= 2.5... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.1.sdk’
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bcbn.c -o bcbn.o
bcbn.c:433:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
bcbn.c:554:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
bcbn.c:554:36: note: put the semicolon on a separate line to silence this warning
bcbn.c:611:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
bcbn.c:611:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:623:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
bcbn.c:623:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:633:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
bcbn.c:633:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:641:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
bcbn.c:931:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
bcbn.c:931:30: note: put the semicolon on a separate line to silence this warning
bcbn.c:943:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
bcbn.c:943:43: note: put the semicolon on a separate line to silence this warning
bcbn.c:953:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
bcbn.c:953:45: note: put the semicolon on a separate line to silence this warning
bcbn.c:1075:10: warning: variable 'p' set but not used [-Wunused-but-set-variable]
  double p = 0;
         ^
bcbn.c:1056:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,c,k;
        ^
bcbn.c:1056:13: warning: unused variable 'k' [-Wunused-variable]
  int i,j,c,k;
            ^
bcbn.c:1281:15: warning: unused variable 'likelihood' [-Wunused-variable]
  long double likelihood, likelihood_d;
              ^
bcbn.c:1367:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1367:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1380:25: warning: variable 'x' set but not used [-Wunused-but-set-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1380:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1449:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1550:22: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,N_all_comp,N_compatible,k;
                     ^
bcbn.c:1550:11: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,N_all_comp,N_compatible,k;
          ^
bcbn.c:1550:35: warning: unused variable 'k' [-Wunused-variable]
  int i,j,N_all_comp,N_compatible,k;
                                  ^
bcbn.c:1675:16: warning: unused variable 'beta' [-Wunused-variable]
  double alpha,beta,var,x;
               ^
bcbn.c:1675:21: warning: unused variable 'var' [-Wunused-variable]
  double alpha,beta,var,x;
                    ^
bcbn.c:1675:25: warning: unused variable 'x' [-Wunused-variable]
  double alpha,beta,var,x;
                        ^
bcbn.c:1675:10: warning: unused variable 'alpha' [-Wunused-variable]
  double alpha,beta,var,x;
         ^
bcbn.c:1755:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1878:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1878:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1878:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1946:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1957:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
bcbn.c:1946:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:1946:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1997:13: warning: unused variable 'N_compatible' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
            ^
bcbn.c:1997:26: warning: variable 'N_all_comp' set but not used [-Wunused-but-set-variable]
  int i,j,k,N_compatible,N_all_comp;
                         ^
bcbn.c:1997:11: warning: unused variable 'k' [-Wunused-variable]
  int i,j,k,N_compatible,N_all_comp;
          ^
bcbn.c:2008:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
bcbn.c:2358:7: warning: unused variable 'i' [-Wunused-variable]
  int i,j,k = 0;
      ^
bcbn.c:2358:9: warning: unused variable 'j' [-Wunused-variable]
  int i,j,k = 0;
        ^
bcbn.c:2362:7: warning: unused variable 'accepted' [-Wunused-variable]
  int accepted = 0;
      ^
bcbn.c:2620:22: warning: unused variable 'MH_ratio' [-Wunused-variable]
  long double alpha, MH_ratio;
                     ^
41 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ctcbn.c -o ctcbn.o
In file included from ctcbn.c:3:
./ct-cbn.h:184:7: warning: unused variable 'j' [-Wunused-variable]
  int j;
      ^
./ct-cbn.h:551:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
./ct-cbn.h:551:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:611:36: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d %d", N, &p));
                                   ^
./ct-cbn.h:611:36: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:670:30: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input, "%d", &n));
                             ^
./ct-cbn.h:670:30: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:682:43: warning: if statement has empty body [-Wempty-body]
  if(fscanf(input,"%d %d", &left, &right));
                                          ^
./ct-cbn.h:682:43: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:692:45: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input,"%d %d", &left, &right));
                                            ^
./ct-cbn.h:692:45: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:719:33: warning: if statement has empty body [-Wempty-body]
    if(fscanf(input, "%lf", &x));
                                ^
./ct-cbn.h:719:33: note: put the semicolon on a separate line to silence this warning
./ct-cbn.h:803:7: warning: unused variable 'i' [-Wunused-variable]
  int i;
      ^
./ct-cbn.h:2721:17: warning: variable 'alpha_new' set but not used [-Wunused-but-set-variable]
  double alpha, alpha_new;
                ^
./ct-cbn.h:3305:7: warning: variable 'mut_next' set but not used [-Wunused-but-set-variable]
  int mut_next, index_next;
      ^
ctcbn.c:88:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
ctcbn.c:79:7: warning: unused variable 'verbose' [-Wunused-variable]
  int verbose = 0;
      ^
ctcbn.c:84:7: warning: unused variable 'GPS' [-Wunused-variable]
  int GPS = 0;
      ^
ctcbn.c:319:7: warning: unused variable 'c' [-Wunused-variable]
  int c = 0;
      ^
ctcbn.c:308:7: warning: unused variable 't_flag' [-Wunused-variable]
  int t_flag = 1;
      ^
ctcbn.c:306:7: warning: unused variable 'l_flag' [-Wunused-variable]
  int l_flag = 0;
      ^
ctcbn.c:305:7: warning: unused variable 'gps_flag' [-Wunused-variable]
  int gps_flag = 0;
      ^
ctcbn.c:303:7: warning: unused variable 'f_flag' [-Wunused-variable]
  int f_flag = 0;
      ^
ctcbn.c:314:7: warning: variable 'N_iter' set but not used [-Wunused-but-set-variable]
  int N_iter = 0;
      ^
ctcbn.c:302:7: warning: unused variable 'error_flag' [-Wunused-variable]
  int error_flag = 0;
      ^
ctcbn.c:313:10: warning: unused variable 'T' [-Wunused-variable]
  double T = REAL(temp)[0];
         ^
ctcbn.c:304:7: warning: variable 'e_flag' set but not used [-Wunused-but-set-variable]
  int e_flag = 0;
      ^
22 warnings generated.
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o
clang -arch x86_64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I.  -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c queue.c -o queue.o
clang -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o CBN2Path.so bcbn.o ctcbn.o init.o queue.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-CBN2Path/00new/CBN2Path/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (CBN2Path)

R version 4.5.2 (2025-10-31) -- "[Not] Part in a Rumble"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(CBN2Path)
> 
> test_check("CBN2Path")
chain: 1
0
chain: 2
0
chain: 3
0
chain: 4
0
       V1                V2               V3                 V4         
 Min.   :0.01069   Min.   :0.1160   Min.   :0.001976   Min.   :0.02317  
 1st Qu.:0.52154   1st Qu.:0.7752   1st Qu.:0.411958   1st Qu.:0.10537  
 Median :0.67733   Median :0.8888   Median :0.583796   Median :0.13197  
 Mean   :0.66650   Mean   :0.8441   Mean   :0.575786   Mean   :0.13651  
 3rd Qu.:0.82869   3rd Qu.:0.9536   3rd Qu.:0.753796   3rd Qu.:0.16406  
 Max.   :0.99993   Max.   :1.0000   Max.   :0.999914   Max.   :0.32331  
       V5         
 Min.   :-12.387  
 1st Qu.: -8.749  
 Median : -8.299  
 Mean   : -8.387  
 3rd Qu.: -7.901  
 Max.   : -7.283  
       V1                 V2                 V3                  V4         
 Min.   :0.007483   Min.   :0.006358   Min.   :0.0004582   Min.   :0.02675  
 1st Qu.:0.524142   1st Qu.:0.776549   1st Qu.:0.4134994   1st Qu.:0.10672  
 Median :0.678421   Median :0.888492   Median :0.5863008   Median :0.13511  
 Mean   :0.667453   Mean   :0.843774   Mean   :0.5784269   Mean   :0.13744  
 3rd Qu.:0.825163   3rd Qu.:0.955626   3rd Qu.:0.7589347   3rd Qu.:0.16417  
 Max.   :0.999871   Max.   :0.999878   Max.   :0.9999668   Max.   :0.35255  
       V5         
 Min.   :-13.090  
 1st Qu.: -8.751  
 Median : -8.289  
 Mean   : -8.382  
 3rd Qu.: -7.883  
 Max.   : -7.285  
       V1                V2               V3                 V4         
 Min.   :0.01111   Min.   :0.1077   Min.   :0.002058   Min.   :0.03091  
 1st Qu.:0.52729   1st Qu.:0.7735   1st Qu.:0.405711   1st Qu.:0.10673  
 Median :0.68018   Median :0.8892   Median :0.582978   Median :0.13380  
 Mean   :0.66904   Mean   :0.8450   Mean   :0.575506   Mean   :0.13767  
 3rd Qu.:0.82955   3rd Qu.:0.9562   3rd Qu.:0.759315   3rd Qu.:0.16323  
 Max.   :1.00000   Max.   :1.0000   Max.   :0.999922   Max.   :0.36144  
       V5         
 Min.   :-14.480  
 1st Qu.: -8.757  
 Median : -8.301  
 Mean   : -8.390  
 3rd Qu.: -7.904  
 Max.   : -7.283  
       V1                 V2                V3               V4         
 Min.   :0.002498   Min.   :0.01216   Min.   :0.0012   Min.   :0.02528  
 1st Qu.:0.525687   1st Qu.:0.77572   1st Qu.:0.4029   1st Qu.:0.10772  
 Median :0.677850   Median :0.88876   Median :0.5818   Median :0.13467  
 Mean   :0.668306   Mean   :0.84515   Mean   :0.5756   Mean   :0.13743  
 3rd Qu.:0.832275   3rd Qu.:0.95412   3rd Qu.:0.7618   3rd Qu.:0.16391  
 Max.   :0.999980   Max.   :0.99997   Max.   :0.9999   Max.   :0.32561  
       V5         
 Min.   :-17.399  
 1st Qu.: -8.759  
 Median : -8.296  
 Mean   : -8.393  
 3rd Qu.: -7.898  
 Max.   : -7.282  
[1] "Criterion: 1.0004364400582"
Potential scale reduction factors:

     Point est. Upper C.I.
[1,]          1          1
[2,]          1          1
[3,]          1          1
[4,]          1          1
[5,]          1          1

Multivariate psrf

1
[1] "##########################################"
[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]

[ FAIL 0 | WARN 2 | SKIP 0 | PASS 9 ]
> 
> proc.time()
   user  system elapsed 
159.804   1.880 169.192