Back to Workflows build report for BioC 3.21

This page was generated on 2025-01-17 16:30 -0500 (Fri, 17 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4767
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4487
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4450
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 28/30HostnameOS / ArchINSTALLBUILD
spicyWorkflow 1.7.0  (landing page)
SOMS Maintainer
Snapshot Date: 2025-01-17 12:45 -0500 (Fri, 17 Jan 2025)
git_url: https://git.bioconductor.org/packages/spicyWorkflow
git_branch: devel
git_last_commit: 57d48c3
git_last_commit_date: 2024-10-29 10:03:40 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for spicyWorkflow on palomino7

To the developers/maintainers of the spicyWorkflow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: spicyWorkflow
Version: 1.7.0
Command: chmod a+r spicyWorkflow -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
StartedAt: 2025-01-17 13:17:51 -0500 (Fri, 17 Jan 2025)
EndedAt: 2025-01-17 13:43:56 -0500 (Fri, 17 Jan 2025)
EllapsedTime: 1564.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r spicyWorkflow -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data spicyWorkflow
###
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* checking for file 'spicyWorkflow/DESCRIPTION' ... OK
* preparing 'spicyWorkflow':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'spicyWorkflow.Rmd' using rmarkdown

Quitting from lines 276-284 [unnamed-chunk-8] (spicyWorkflow.Rmd)
Error: processing vignette 'spicyWorkflow.Rmd' failed with diagnostics:
error writing to connection
--- failed re-building 'spicyWorkflow.Rmd'

SUMMARY: processing the following file failed:
  'spicyWorkflow.Rmd'

Error: Vignette re-building failed.
Execution halted
Error in serialize(data, node$con) : error writing to connection
Calls: <Anonymous> ... .send_to -> <Anonymous> -> sendData.SOCKnode -> serialize