Back to Workflows build report for BioC 3.21

This page was generated on 2025-01-17 16:30 -0500 (Fri, 17 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4767
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4487
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4450
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 27/30HostnameOS / ArchINSTALLBUILD
SingscoreAMLMutations 1.23.0  (landing page)
Dharmesh D. Bhuva
Snapshot Date: 2025-01-17 12:45 -0500 (Fri, 17 Jan 2025)
git_url: https://git.bioconductor.org/packages/SingscoreAMLMutations
git_branch: devel
git_last_commit: f432177
git_last_commit_date: 2024-10-29 10:03:15 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK  YES
palomino7Windows Server 2022 Datacenter / x64  OK    OK  
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  

BUILD results for SingscoreAMLMutations on lconway

To the developers/maintainers of the SingscoreAMLMutations package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SingscoreAMLMutations
Version: 1.23.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations
StartedAt: 2025-01-17 13:09:18 -0500 (Fri, 17 Jan 2025)
EndedAt: 2025-01-17 13:13:58 -0500 (Fri, 17 Jan 2025)
EllapsedTime: 280.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data SingscoreAMLMutations
###
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* checking for file ‘SingscoreAMLMutations/DESCRIPTION’ ... OK
* preparing ‘SingscoreAMLMutations’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘workflow_transcriptional_mut_sig.Rmd’ using rmarkdown
2025-01-17 13:13:26.293 R[15036:930907567] XType: com.apple.fonts is not accessible.
2025-01-17 13:13:26.293 R[15036:930907567] XType: XTFontStaticRegistry is enabled.

Quitting from lines 247-257 [download_gencode] (workflow_transcriptional_mut_sig.Rmd)
Error: processing vignette 'workflow_transcriptional_mut_sig.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘workflow_transcriptional_mut_sig.Rmd’

--- re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’ using rmarkdown

Quitting from lines 244-254 [download_gencode] (workflow_transcriptional_mut_sig_chinese.Rmd)
Error: processing vignette 'workflow_transcriptional_mut_sig_chinese.Rmd' failed with diagnostics:
not all 'rnames' found or unique.
--- failed re-building ‘workflow_transcriptional_mut_sig_chinese.Rmd’

SUMMARY: processing the following files failed:
  ‘workflow_transcriptional_mut_sig.Rmd’
  ‘workflow_transcriptional_mut_sig_chinese.Rmd’

Error: Vignette re-building failed.
Execution halted