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This page was generated on 2025-01-16 15:01 -0500 (Thu, 16 Jan 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4767
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 306/430HostnameOS / ArchINSTALLBUILDCHECK
ProteinGymR 1.1.1  (landing page)
Tram Nguyen
Snapshot Date: 2025-01-16 07:30 -0500 (Thu, 16 Jan 2025)
git_url: https://git.bioconductor.org/packages/ProteinGymR
git_branch: devel
git_last_commit: 3632047
git_last_commit_date: 2025-01-14 10:35:26 -0500 (Tue, 14 Jan 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for ProteinGymR on nebbiolo1

To the developers/maintainers of the ProteinGymR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ProteinGymR
Version: 1.1.1
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
StartedAt: 2025-01-16 11:33:34 -0500 (Thu, 16 Jan 2025)
EndedAt: 2025-01-16 11:34:24 -0500 (Thu, 16 Jan 2025)
EllapsedTime: 50.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
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* checking for file ‘ProteinGymR/DESCRIPTION’ ... OK
* preparing ‘ProteinGymR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘data_import_and_representation.Rmd’ using rmarkdown

Quitting from lines 179-181 [ACE2 heatmap] (data_import_and_representation.Rmd)
Error: processing vignette 'data_import_and_representation.Rmd' failed with diagnostics:
could not find function "colorRamp2"
--- failed re-building ‘data_import_and_representation.Rmd’

SUMMARY: processing the following file failed:
  ‘data_import_and_representation.Rmd’

Error: Vignette re-building failed.
Execution halted