Back to Build/check report for BioC 3.21 experimental data
ABCDEFGHIJKLMNO[P]QRSTUVWXYZ

This page was generated on 2025-09-25 15:01 -0400 (Thu, 25 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 307/432HostnameOS / ArchINSTALLBUILDCHECK
ProteinGymR 1.2.6  (landing page)
Tram Nguyen
Snapshot Date: 2025-09-25 07:30 -0400 (Thu, 25 Sep 2025)
git_url: https://git.bioconductor.org/packages/ProteinGymR
git_branch: RELEASE_3_21
git_last_commit: ca3ba08
git_last_commit_date: 2025-09-12 16:33:29 -0400 (Fri, 12 Sep 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for ProteinGymR on nebbiolo1

To the developers/maintainers of the ProteinGymR package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: ProteinGymR
Version: 1.2.6
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
StartedAt: 2025-09-25 11:33:51 -0400 (Thu, 25 Sep 2025)
EndedAt: 2025-09-25 11:37:48 -0400 (Thu, 25 Sep 2025)
EllapsedTime: 237.2 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data ProteinGymR
###
##############################################################################
##############################################################################


* checking for file ‘ProteinGymR/DESCRIPTION’ ... OK
* preparing ‘ProteinGymR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘data_import_and_representation.Rmd’ using rmarkdown

Quitting from data_import_and_representation.Rmd:234-237 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
NULL
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'data_import_and_representation.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `fun()`:
! argument "layout" is missing, with no default
--- failed re-building ‘data_import_and_representation.Rmd’

--- re-building ‘visualization_exploration.Rmd’ using rmarkdown
--- finished re-building ‘visualization_exploration.Rmd’

SUMMARY: processing the following file failed:
  ‘data_import_and_representation.Rmd’

Error: Vignette re-building failed.
Execution halted