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This page was generated on 2025-09-25 15:01 -0400 (Thu, 25 Sep 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4827
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 207/432HostnameOS / ArchINSTALLBUILDCHECK
KEGGandMetacoreDzPathwaysGEO 1.28.0  (landing page)
Gaurav Bhatti
Snapshot Date: 2025-09-25 07:30 -0400 (Thu, 25 Sep 2025)
git_url: https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
git_branch: RELEASE_3_21
git_last_commit: fb4d093
git_last_commit_date: 2025-04-15 09:55:07 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published


CHECK results for KEGGandMetacoreDzPathwaysGEO on nebbiolo1

To the developers/maintainers of the KEGGandMetacoreDzPathwaysGEO package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 1.28.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.28.0.tar.gz
StartedAt: 2025-09-25 12:29:45 -0400 (Thu, 25 Sep 2025)
EndedAt: 2025-09-25 12:30:42 -0400 (Thu, 25 Sep 2025)
EllapsedTime: 56.9 seconds
RetCode: 0
Status:   OK  
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:KEGGandMetacoreDzPathwaysGEO.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings KEGGandMetacoreDzPathwaysGEO_1.28.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.21-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 4.5.1 (2025-06-13)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.3 LTS
* using session charset: UTF-8
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... INFO
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.7Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL KEGGandMetacoreDzPathwaysGEO
###
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘1.28.0’
** using staged installation
** data
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (KEGGandMetacoreDzPathwaysGEO)

Tests output


Example timings

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings

nameusersystemelapsed
GSE11450.3090.0150.324
GSE119062.9470.0693.017
GSE14924_CD40.2270.0150.242
GSE14924_CD80.2240.0200.244
GSE167590.3110.0100.321
GSE194200.2020.0140.217
GSE201640.0670.0030.070
GSE227800.2100.0070.217
GSE238780.7250.0300.755
GSE24739_G00.4330.0090.441
GSE24739_G10.4410.0070.447
GSE301530.5400.0150.555
GSE326760.6980.0190.717
GSE38666_epithelia0.3050.0140.318
GSE38666_stroma0.1940.0090.202
GSE41830.2300.0150.246
GSE420570.9310.0200.953
GSE73050.6880.0080.696
KEGGandMetacoreDzPathwaysGEO-package0.5900.0190.609