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This page was generated on 2025-04-07 12:51 -0400 (Mon, 07 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 871
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Package 47/217HostnameOS / ArchINSTALLBUILDCHECK
Category 2.73.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2025-04-07 12:00 -0400 (Mon, 07 Apr 2025)
git_url: https://git.bioconductor.org/packages/Category
git_branch: devel
git_last_commit: 1ae31f4
git_last_commit_date: 2024-10-29 09:24:43 -0400 (Tue, 29 Oct 2024)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped


BUILD results for Category on teran2

To the developers/maintainers of the Category package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Category
Version: 2.73.0
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Category
StartedAt: 2025-04-07 12:24:45 -0400 (Mon, 07 Apr 2025)
EndedAt: 2025-04-07 12:25:54 -0400 (Mon, 07 Apr 2025)
EllapsedTime: 68.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Category
###
##############################################################################
##############################################################################


* checking for file ‘Category/DESCRIPTION’ ... OK
* preparing ‘Category’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Category.Rnw’ using Sweave
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: ‘generics’

The following objects are masked from ‘package:base’:

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: ‘BiocGenerics’

The following objects are masked from ‘package:stats’:

    IQR, mad, sd, var, xtabs

The following objects are masked from ‘package:base’:

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: ‘S4Vectors’

The following object is masked from ‘package:utils’:

    findMatches

The following objects are masked from ‘package:base’:

    I, expand.grid, unname

Loading required package: XML
Loading required package: org.Hs.eg.db


Loading required package: Matrix

Attaching package: ‘Matrix’

The following object is masked from ‘package:S4Vectors’:

    expand

--- finished re-building ‘Category.Rnw’

--- re-building ‘ChromBand.Rnw’ using Sweave
Loading required package: regioneR
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: lattice

Attaching package: 'limma'

The following object is masked from 'package:geneplotter':

    plotMA

The following object is masked from 'package:BiocGenerics':

    plotMA


Attaching package: 'graph'

The following object is masked from 'package:XML':

    addNode

Error: processing vignette 'ChromBand.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'ChromBand.tex' failed.
LaTeX errors:
! Paragraph ended before \Gin@ii was complete.
<to be read again> 
                   \par 
l.134 
      
! Emergency stop.
<to be read again> 
                   \par 
l.134 
      
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building 'ChromBand.Rnw'

SUMMARY: processing the following file failed:
  'ChromBand.Rnw'

Error: Vignette re-building failed.
Execution halted