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This page was generated on 2025-04-07 12:51 -0400 (Mon, 07 Apr 2025).
Hostname | OS | Arch (*) | R version | Installed pkgs |
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teran2 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 871 |
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Package 47/217 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | |||||||
Category 2.73.0 (landing page) Bioconductor Package Maintainer
| teran2 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | ERROR | skipped | |||||||
To the developers/maintainers of the Category package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: Category |
Version: 2.73.0 |
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Category |
StartedAt: 2025-04-07 12:24:45 -0400 (Mon, 07 Apr 2025) |
EndedAt: 2025-04-07 12:25:54 -0400 (Mon, 07 Apr 2025) |
EllapsedTime: 68.6 seconds |
RetCode: 1 |
Status: ERROR |
PackageFile: None |
PackageFileSize: NA |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Category ### ############################################################################## ############################################################################## * checking for file ‘Category/DESCRIPTION’ ... OK * preparing ‘Category’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘Category.Rnw’ using Sweave Loading required package: BiocGenerics Loading required package: generics Attaching package: ‘generics’ The following objects are masked from ‘package:base’: as.difftime, as.factor, as.ordered, intersect, is.element, setdiff, setequal, union Attaching package: ‘BiocGenerics’ The following objects are masked from ‘package:stats’: IQR, mad, sd, var, xtabs The following objects are masked from ‘package:base’: Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append, as.data.frame, basename, cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind, rownames, sapply, saveRDS, table, tapply, unique, unsplit, which.max, which.min Welcome to Bioconductor Vignettes contain introductory material; view with 'browseVignettes()'. To cite Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'. Loading required package: AnnotationDbi Loading required package: stats4 Loading required package: IRanges Loading required package: S4Vectors Attaching package: ‘S4Vectors’ The following object is masked from ‘package:utils’: findMatches The following objects are masked from ‘package:base’: I, expand.grid, unname Loading required package: XML Loading required package: org.Hs.eg.db Loading required package: Matrix Attaching package: ‘Matrix’ The following object is masked from ‘package:S4Vectors’: expand --- finished re-building ‘Category.Rnw’ --- re-building ‘ChromBand.Rnw’ using Sweave Loading required package: regioneR Loading required package: GenomicRanges Loading required package: GenomeInfoDb Loading required package: lattice Attaching package: 'limma' The following object is masked from 'package:geneplotter': plotMA The following object is masked from 'package:BiocGenerics': plotMA Attaching package: 'graph' The following object is masked from 'package:XML': addNode Error: processing vignette 'ChromBand.Rnw' failed with diagnostics: Running 'texi2dvi' on 'ChromBand.tex' failed. LaTeX errors: ! Paragraph ended before \Gin@ii was complete. <to be read again> \par l.134 ! Emergency stop. <to be read again> \par l.134 ! ==> Fatal error occurred, no output PDF file produced! --- failed re-building 'ChromBand.Rnw' SUMMARY: processing the following file failed: 'ChromBand.Rnw' Error: Vignette re-building failed. Execution halted