Rapid builds (Linux only) of a subset of BioC 3.21<BR>Report updated every 6 hours

Hostname	OS	Arch (*)	R version	Installed pkgs
teran2	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2024-11-14 r87333) -- "Unsuffered Consequences"	858
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INSTALL results for ncdfFlow on teran2

To the developers/maintainers of the ncdfFlow package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: ncdfFlow

Version: 2.53.0

Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL ncdfFlow

StartedAt: 2024-11-21 06:12:47 -0500 (Thu, 21 Nov 2024)

EndedAt: 2024-11-21 06:12:58 -0500 (Thu, 21 Nov 2024)

EllapsedTime: 11.2 seconds

RetCode: 0

Status: OK

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD INSTALL ncdfFlow
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* installing to library ‘/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library’
* installing *source* package ‘ncdfFlow’ ...
** using staged installation
** libs
using C++ compiler: ‘g++ (Ubuntu 13.2.0-23ubuntu4) 13.2.0’
using C++11
g++ -std=gnu++11 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/BH/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -DR_NO_REMAP -c cpp11.cpp -o cpp11.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include/cpp11.hpp:3,
                 from /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include/cpp11/declarations.hpp:13,
                 from cpp11.cpp:5:
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
g++ -std=gnu++11 -I"/home/rapidbuild/bbs-3.21-bioc-rapid/R/include" -DNDEBUG  -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/BH/include' -I'/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/include' -I/usr/local/include    -fpic  -g -O2  -Wall -DR_NO_REMAP -c hdfFlow.cpp -o hdfFlow.o
In file included from /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include/cpp11.hpp:3,
                 from hdfFlow.cpp:2:
/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/cpp11/include/cpp11/R.hpp:11: warning: "R_NO_REMAP" redefined
   11 | #define R_NO_REMAP
      | 
<command-line>: note: this is the location of the previous definition
hdfFlow.cpp: In function ‘void readSlice_cpp(hid_t, hid_t, hid_t, std::vector<int>, int, int, double*, bool)’:
hdfFlow.cpp:508:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  508 |                 if(sampleIndx >= nSample)
      |                    ~~~~~~~~~~~^~~~~~~~~~
hdfFlow.cpp:493:21: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  493 |         herr_t      status;
      |                     ^~~~~~
mkdir -p "/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/00LOCK-ncdfFlow/00new/ncdfFlow/lib"
ar rs "/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/00LOCK-ncdfFlow/00new/ncdfFlow/lib/libncdfFlow.a" cpp11.o hdfFlow.o
ar: creating /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/00LOCK-ncdfFlow/00new/ncdfFlow/lib/libncdfFlow.a
g++ -std=gnu++11 -shared -L/usr/local/lib -o ncdfFlow.so cpp11.o hdfFlow.o /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/lib/libhdf5_cpp.a /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/lib/libhdf5.a -L/media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/Rhdf5lib/lib -lcrypto -lcurl -lsz -laec -lz -ldl -lm
installing to /media/volume/teran2_disk/rapidbuild/bbs-3.21-bioc-rapid/R/site-library/00LOCK-ncdfFlow/00new/ncdfFlow/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncdfFlow)