Back to Rapid builds (Linux only) of a subset of BioC 3.21
Report updated every 6 hours

This page was generated on 2025-02-06 10:01 -0500 (Thu, 06 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 179/217HostnameOS / ArchINSTALLBUILDCHECK
Rsubread 2.21.1  (landing page)
Wei Shi , Yang Liao and Gordon K Smyth
Snapshot Date: 2025-02-06 06:00 -0500 (Thu, 06 Feb 2025)
git_url: https://git.bioconductor.org/packages/Rsubread
git_branch: devel
git_last_commit: 0a98f2c
git_last_commit_date: 2025-02-02 19:31:13 -0500 (Sun, 02 Feb 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for Rsubread on teran2

To the developers/maintainers of the Rsubread package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: Rsubread
Version: 2.21.1
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
StartedAt: 2025-02-06 07:30:52 -0500 (Thu, 06 Feb 2025)
EndedAt: 2025-02-06 07:37:18 -0500 (Thu, 06 Feb 2025)
EllapsedTime: 386.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data Rsubread
###
##############################################################################
##############################################################################


* checking for file ‘Rsubread/DESCRIPTION’ ... OK
* preparing ‘Rsubread’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘Rsubread.Rnw’ using Sweave
trying URL 'https://shilab-bioinformatics.github.io/cellCounts-Example/cellCounts-Example.zip'
Content type 'application/zip' length 74690393 bytes (71.2 MB)
==================================================
downloaded 71.2 MB


Error: processing vignette 'Rsubread.Rnw' failed with diagnostics:
 chunk 7 
Error in cellCounts(paste0(temp.dir, "/chr1"), sample.sheet, nthreads = 1,  : 
  Error: index '/tmp/RtmpfFrIAK/chr1' is not found.

--- failed re-building ‘Rsubread.Rnw’

SUMMARY: processing the following file failed:
  ‘Rsubread.Rnw’

Error: Vignette re-building failed.
Execution halted