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This page was generated on 2025-02-06 10:01 -0500 (Thu, 06 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 62/217HostnameOS / ArchINSTALLBUILDCHECK
DESeq2 1.47.3  (landing page)
Michael Love
Snapshot Date: 2025-02-06 06:00 -0500 (Thu, 06 Feb 2025)
git_url: https://git.bioconductor.org/packages/DESeq2
git_branch: devel
git_last_commit: 2b499ea
git_last_commit_date: 2025-02-04 07:56:33 -0500 (Tue, 04 Feb 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for DESeq2 on teran2

To the developers/maintainers of the DESeq2 package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: DESeq2
Version: 1.47.3
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
StartedAt: 2025-02-06 06:45:02 -0500 (Thu, 06 Feb 2025)
EndedAt: 2025-02-06 06:46:10 -0500 (Thu, 06 Feb 2025)
EllapsedTime: 67.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data DESeq2
###
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* checking for file ‘DESeq2/DESCRIPTION’ ... OK
* preparing ‘DESeq2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘DESeq2.Rmd’ using rmarkdown

Quitting from lines 420-432 [loadPasilla] (DESeq2.Rmd)
Error: processing vignette 'DESeq2.Rmd' failed with diagnostics:
there is no package called 'pasilla'
--- failed re-building ‘DESeq2.Rmd’

SUMMARY: processing the following file failed:
  ‘DESeq2.Rmd’

Error: Vignette re-building failed.
Execution halted