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This page was generated on 2025-03-11 15:34 -0400 (Tue, 11 Mar 2025).

HostnameOSArch (*)R versionInstalled pkgs
teran2Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 869
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Package 57/217HostnameOS / ArchINSTALLBUILDCHECK
CytoML 2.19.3  (landing page)
Mike Jiang
Snapshot Date: 2025-03-11 12:00 -0400 (Tue, 11 Mar 2025)
git_url: https://git.bioconductor.org/packages/CytoML
git_branch: devel
git_last_commit: d9df748
git_last_commit_date: 2025-03-06 20:43:20 -0400 (Thu, 06 Mar 2025)
teran2Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped

BUILD results for CytoML on teran2

To the developers/maintainers of the CytoML package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CytoML
Version: 2.19.3
Command: /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML
StartedAt: 2025-03-11 12:38:30 -0400 (Tue, 11 Mar 2025)
EndedAt: 2025-03-11 12:39:42 -0400 (Tue, 11 Mar 2025)
EllapsedTime: 71.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/rapidbuild/bbs-3.21-bioc-rapid/R/bin/R CMD build --keep-empty-dirs --no-resave-data CytoML
###
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* checking for file ‘CytoML/DESCRIPTION’ ... OK
* preparing ‘CytoML’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToExportGatingSet.Rmd’ using rmarkdown
--- finished re-building ‘HowToExportGatingSet.Rmd’

--- re-building ‘cytobank2GatingSet.Rmd’ using rmarkdown
--- finished re-building ‘cytobank2GatingSet.Rmd’

--- re-building ‘flowjo_to_gatingset.Rmd’ using rmarkdown

Quitting from lines 115-117 [unnamed-chunk-9] (flowjo_to_gatingset.Rmd)
Error: processing vignette 'flowjo_to_gatingset.Rmd' failed with diagnostics:
no slot of name "name" for this object of class "pEdge"
--- failed re-building ‘flowjo_to_gatingset.Rmd’

SUMMARY: processing the following file failed:
  ‘flowjo_to_gatingset.Rmd’

Error: Vignette re-building failed.
Execution halted