Back to Long Tests report for BioC 3.21

This page was generated on 2024-12-07 23:55 -0500 (Sat, 07 Dec 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 4749
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2024-10-26 r87273 ucrt) -- "Unsuffered Consequences" 4461
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences" 4411
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 11/30HostnameOS / ArchCHECK
cBioPortalData 2.19.1  (landing page)
Marcel Ramos
Snapshot Date: 2024-12-07 09:55 -0500 (Sat, 07 Dec 2024)
git_url: https://git.bioconductor.org/packages/cBioPortalData
git_branch: devel
git_last_commit: c9a48d9
git_last_commit_date: 2024-11-18 16:05:44 -0500 (Mon, 18 Nov 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  ERROR  

CHECK results for cBioPortalData on lconway

To the developers/maintainers of the cBioPortalData package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: cBioPortalData
Version: 2.19.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no cBioPortalData_2.19.1.tar.gz
StartedAt: 2024-12-07 16:06:03 -0500 (Sat, 07 Dec 2024)
EndedAt: 2024-12-07 19:27:16 -0500 (Sat, 07 Dec 2024)
EllapsedTime: 12073.6 seconds
RetCode: 1
Status:   ERROR  
CheckDir: cBioPortalData.Rcheck
Warnings: NA

Tests output

cBioPortalData.Rcheck/tests/testthat.Rout.fail


R Under development (unstable) (2024-11-20 r87352) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(cBioPortalData)
Loading required package: AnVIL
Loading required package: dplyr

Attaching package: 'dplyr'

The following object is masked from 'package:testthat':

    matches

The following objects are masked from 'package:stats':

    filter, lag

The following objects are masked from 'package:base':

    intersect, setdiff, setequal, union

Loading required package: AnVILBase
Loading required package: MultiAssayExperiment
Loading required package: SummarizedExperiment
Loading required package: MatrixGenerics
Loading required package: matrixStats

Attaching package: 'matrixStats'

The following object is masked from 'package:dplyr':

    count


Attaching package: 'MatrixGenerics'

The following objects are masked from 'package:matrixStats':

    colAlls, colAnyNAs, colAnys, colAvgsPerRowSet, colCollapse,
    colCounts, colCummaxs, colCummins, colCumprods, colCumsums,
    colDiffs, colIQRDiffs, colIQRs, colLogSumExps, colMadDiffs,
    colMads, colMaxs, colMeans2, colMedians, colMins, colOrderStats,
    colProds, colQuantiles, colRanges, colRanks, colSdDiffs, colSds,
    colSums2, colTabulates, colVarDiffs, colVars, colWeightedMads,
    colWeightedMeans, colWeightedMedians, colWeightedSds,
    colWeightedVars, rowAlls, rowAnyNAs, rowAnys, rowAvgsPerColSet,
    rowCollapse, rowCounts, rowCummaxs, rowCummins, rowCumprods,
    rowCumsums, rowDiffs, rowIQRDiffs, rowIQRs, rowLogSumExps,
    rowMadDiffs, rowMads, rowMaxs, rowMeans2, rowMedians, rowMins,
    rowOrderStats, rowProds, rowQuantiles, rowRanges, rowRanks,
    rowSdDiffs, rowSds, rowSums2, rowTabulates, rowVarDiffs, rowVars,
    rowWeightedMads, rowWeightedMeans, rowWeightedMedians,
    rowWeightedSds, rowWeightedVars

Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following object is masked from 'package:dplyr':

    explain

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following object is masked from 'package:dplyr':

    combine

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following objects are masked from 'package:dplyr':

    first, rename

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges

Attaching package: 'IRanges'

The following objects are masked from 'package:dplyr':

    collapse, desc, slice

Loading required package: GenomeInfoDb
Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.


Attaching package: 'Biobase'

The following object is masked from 'package:MatrixGenerics':

    rowMedians

The following objects are masked from 'package:matrixStats':

    anyMissing, rowMedians

> 
> test_check("cBioPortalData")
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in TCGAutils::uniformBuilds(x[[ncbi]]) : 
  Frequency of NA values higher than the cutoff tolerance
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in validObject(.Object) : invalid class "ExperimentList" object: 
    Non-unique names provided
Error in TCGAutils::uniformBuilds(x[[ncbi]]) : 
  Frequency of NA values higher than the cutoff tolerance
Error in strsplit(hugos, "|", TRUE) : non-character argument
Error in validObject(.Object) : invalid class "ExperimentList" object: 
    Non-unique names provided
Error in TCGAutils::uniformBuilds(x[[ncbi]]) : 
  Frequency of NA values higher than the cutoff tolerance
Error in strsplit(hugos, "|", TRUE) : non-character argument
dyld[29117]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[29186]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[29427]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
Error in validObject(.Object) : invalid class "ExperimentList" object: 
    ExperimentList elements must be named
dyld[29458]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[29459]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[29461]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[30656]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[30696]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
dyld[30699]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in TCGAutils::uniformBuilds(x[[ncbi]]) : 
  Frequency of NA values higher than the cutoff tolerance
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
Error in read.table(file = file, header = header, sep = sep, quote = quote,  : 
  more columns than column names
dyld[32237]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[32239]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[32242]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
dyld[32322]: Library not loaded: '/usr/local/opt/openssl@3/lib/libssl.3.dylib'
  Referenced from: '/usr/local/Cellar/wget/1.21.4/bin/wget'
  Reason: tried: '/usr/local/opt/openssl@3/lib/libssl.3.dylib' (no such file), '/usr/local/lib/libssl.3.dylib' (no such file), '/usr/lib/libssl.3.dylib' (no such file)
Error in utils::download.file(fileURL, destfile = tmpFile, quiet = TRUE,  : 
  'wget' call had nonzero exit status
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
Error in .checkFixSampleMap(sampleMap) : 
  'sampleMap' does not have required columns
[ FAIL 1 | WARN 2174 | SKIP 0 | PASS 7 ]

══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_cBioPortalData.R:29:5'): cBioPortal API is working with most studies ──
successrate > 80 is not TRUE

`actual`:   FALSE
`expected`: TRUE 

[ FAIL 1 | WARN 2174 | SKIP 0 | PASS 7 ]
Error: Test failures
Execution halted

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no cBioPortalData_2.19.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/cBioPortalData.Rcheck’
* using R Under development (unstable) (2024-11-20 r87352)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘cBioPortalData/DESCRIPTION’ ... OK
* this is package ‘cBioPortalData’ version ‘2.19.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cBioPortalData’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  cBioDataPack.Rd: MultiAssayExperiment-class
  cBioPortal-class.Rd: Service-class
  cBioPortalData.Rd: MultiAssayExperiment-class
  downloadStudy.Rd: MultiAssayExperiment-class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 ERROR
Running the tests in ‘longtests/testthat.R’ failed.
Last 13 lines of output:
    'sampleMap' does not have required columns
  Error in .checkFixSampleMap(sampleMap) : 
    'sampleMap' does not have required columns
  [ FAIL 1 | WARN 2174 | SKIP 0 | PASS 7 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_cBioPortalData.R:29:5'): cBioPortal API is working with most studies ──
  successrate > 80 is not TRUE
  
  `actual`:   FALSE
  `expected`: TRUE 
  
  [ FAIL 1 | WARN 2174 | SKIP 0 | PASS 7 ]
  Error: Test failures
  Execution halted
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/cBioPortalData.Rcheck/00check.log’
for details.

Installation output

cBioPortalData.Rcheck/00install.out

* installing *source* package ‘cBioPortalData’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (cBioPortalData)