Back to Long Tests report for BioC 3.21

This page was generated on 2025-02-08 23:55 -0500 (Sat, 08 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4719
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4480
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4491
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 8/30HostnameOS / ArchCHECK
biodbNcbi 1.11.0  (landing page)
Pierrick Roger
Snapshot Date: 2025-02-08 11:09 -0500 (Sat, 08 Feb 2025)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: devel
git_last_commit: 4a3f8f2
git_last_commit_date: 2024-10-29 11:09:30 -0500 (Tue, 29 Oct 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  ERROR  
palomino7Windows Server 2022 Datacenter / x64  WARNINGS  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway

To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.11.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
StartedAt: 2025-02-08 16:01:25 -0500 (Sat, 08 Feb 2025)
EndedAt: 2025-02-08 16:03:19 -0500 (Sat, 08 Feb 2025)
EllapsedTime: 113.7 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2025-02-08 16:02:09.199][biodb::testContext]
biodb.INFO [2025-02-08 16:02:09.201][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:02:09.202][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2025-02-08 16:02:09.203][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:02:09.204][biodb::testContext]
biodb.INFO [2025-02-08 16:02:09.208][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:02:09.210][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:02:09.216][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:09.217][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:02:09.217][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:02:09.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.220][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:02:09.233][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:02:09.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.236][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:02:09.237][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:02:09.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.240][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:02:09.241][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:02:09.242][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:02:09.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.244][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:02:09.245][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:02:09.246][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:02:09.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.248][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:02:09.249][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:02:09.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.252][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:02:09.252][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:02:09.253][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:02:09.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.256][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:02:09.257][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:02:09.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.260][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:02:09.260][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:02:09.261][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:02:09.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.264][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:02:09.265][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:02:09.266][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:02:09.267][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:02:09.267][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:02:09.268][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:02:09.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.271][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:02:09.272][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:02:09.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.275][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:02:09.276][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:02:09.277][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.279][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:02:09.280][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:02:09.281][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.283][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:02:09.284][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:02:09.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.287][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:02:09.287][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:02:09.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.290][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:02:09.291][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:02:09.307][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:02:09.308][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.310][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:02:09.311][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:02:09.312][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:02:09.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.316][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:02:09.345][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.357][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:02:09.358][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.359][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.359][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.360][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.361][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.362][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.363][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:02:09.363][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.364][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.365][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:02:09.366][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.366][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.367][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.368][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:09.368][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:09.368][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:09.368][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:02:09.368][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:02:09.369][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:09.370][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.370][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.371][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.372][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.372][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.373][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.374][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.375][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.375][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.376][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.377][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.378][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:02:09.379][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.380][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:02:09.381][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.382][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.383][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.384][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.384][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.385][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.386][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:02:09.387][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.388][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.388][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:02:09.389][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.390][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.391][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.392][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:09.392][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:09.392][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:09.392][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:02:09.392][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:02:09.392][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:09.393][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.394][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.395][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.397][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.398][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.399][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.399][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.400][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.401][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.402][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:02:09.403][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.404][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:02:09.405][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.405][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.406][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.407][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.407][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.409][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:02:09.410][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.411][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.411][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:02:09.412][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.413][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.414][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.414][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.415][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:09.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.418][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.418][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.420][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.420][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.421][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.422][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.422][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.423][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.424][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:02:09.425][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.426][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:02:09.427][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.428][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.428][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.429][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.430][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.430][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.431][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:02:09.432][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.433][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.434][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:02:09.434][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.435][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.436][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.437][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.437][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:09.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.439][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.442][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.442][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.443][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.444][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.444][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.445][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.448][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:09.449][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.472][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.493][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.502][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.503][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.504][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.509][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:02:09.513][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:02:09.514][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:02:09.515][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:02:09.516][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:02:09.516][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:02:09.518][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:02:09.519][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:02:09.520][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:02:09.521][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:02:09.522][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:02:09.523][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:02:09.524][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:02:09.525][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:02:09.525][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:02:09.526][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:02:09.527][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:02:09.528][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:02:09.529][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:02:09.530][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:02:09.531][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:02:09.532][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:02:09.533][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:02:09.535][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:02:09.536][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:02:09.537][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:02:09.538][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:02:09.539][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:02:09.540][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:02:09.541][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:02:09.542][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:02:09.543][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:02:09.544][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:02:09.545][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:02:09.546][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:02:09.547][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:02:09.548][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:02:09.549][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:02:09.550][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:02:09.551][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:02:09.552][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:02:09.553][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:02:09.554][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:02:09.555][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:02:09.557][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:02:09.558][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:02:09.559][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:02:09.560][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:02:09.561][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:02:09.562][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:02:09.563][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:02:09.564][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:02:09.565][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:02:09.566][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:02:09.567][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:02:09.568][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:02:09.569][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:02:09.570][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:02:09.571][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:02:09.572][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:02:09.573][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:02:09.574][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:02:09.576][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:02:09.577][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:02:09.578][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:02:09.579][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:02:09.580][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:02:09.581][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:02:09.582][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:02:09.583][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:02:09.584][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:02:09.585][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:02:09.586][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:02:09.587][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:02:09.588][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:02:09.589][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:02:09.590][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:02:09.591][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:02:09.592][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:02:09.593][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:02:09.594][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:02:09.595][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:02:09.596][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:02:09.600][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:02:09.601][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:02:09.604][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:09.604][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.606][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.636][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.649][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.651][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.659][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.667][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:09.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:09.690][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:02:09.697][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:09.699][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.700][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:02:09.700][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.701][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.702][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.703][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.703][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.705][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:02:09.705][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.706][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.707][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:02:09.708][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.708][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:02:09.708][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:02:09.709][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.710][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.711][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:02:09.711][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.712][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.713][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.713][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.714][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.715][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.715][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:09.715][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:02:09.716][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.717][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.718][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.718][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.719][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:02:09.721][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.722][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:02:09.722][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.723][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.724][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.725][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.725][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.726][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.727][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:09.728][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.729][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.730][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:02:09.730][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.731][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:02:09.731][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:02:09.731][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:02:09.731][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:02:09.731][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:02:09.731][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:02:09.732][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.733][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:09.734][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:02:09.734][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.735][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.735][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.736][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.737][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.737][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.738][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:09.738][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:09.739][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.739][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.740][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.741][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.742][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:02:09.743][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.744][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:02:09.745][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.745][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.746][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.768][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.770][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.770][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.771][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:09.772][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.773][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.773][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:02:09.774][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.775][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:09.776][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.777][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:09.777][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:09.777][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:09.778][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:02:09.778][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.779][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.780][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.781][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.782][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.783][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:09.783][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:09.783][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:02:09.783][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.784][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.785][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.785][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:09.786][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:02:09.788][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.788][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:02:09.789][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.790][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:09.791][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.792][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.792][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.793][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.794][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:09.795][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:09.795][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.796][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:02:09.797][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:09.798][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:02:09.798][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:02:09.798][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:09.799][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:09.800][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:02:09.801][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.802][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.803][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:09.803][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:09.804][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:09.805][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:09.806][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:09.806][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:09.806][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:02:09.807][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:09.807][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:09.808][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:09.809][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:09.814][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:02:09.815][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:02:09.816][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:02:09.818][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:02:09.819][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:02:09.820][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:02:09.837][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:09.838][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-08 16:02:09.841][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:09.844][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-08 16:02:09.847][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:09.848][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:09.849][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2025-02-08 16:02:09.850][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:09.851][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:09.852][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2025-02-08 16:02:09.859][biodb::testThat]
biodb.INFO [2025-02-08 16:02:09.860][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:02:09.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:09.861][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:09.865][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2025-02-08 16:02:09.866][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:09.869][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:09.874][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:09.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:09.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:09.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:09.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:09.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:09.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:09.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.913][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:09.922][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:09.923][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.924][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.952][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:09.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:09.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:09.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:09.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:09.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:09.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:09.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:09.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:09.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:09.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:09.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:09.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:09.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:09.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:09.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:09.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:09.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:09.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:10.013][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2025-02-08 16:02:10.015][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.018][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.042][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.046][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:10.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:10.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:10.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:10.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.151][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.157][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.163][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.165][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.175][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.176][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.182][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.183][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.183][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.184][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.198][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2025-02-08 16:02:10.224][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:10.225][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:10.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:10.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:10.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:10.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:10.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:10.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:10.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.258][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.259][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.262][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:10.299][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-08 16:02:10.314][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.317][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.321][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.327][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:10.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:10.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:10.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:10.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.404][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.406][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.417][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.426][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.426][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.428][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:10.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.438][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.439][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:10.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:10.445][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:10.446][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:10.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:10.447][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:10.455][biodb::testThat]
biodb.INFO [2025-02-08 16:02:10.456][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:02:10.456][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:10.457][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:10.459][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2025-02-08 16:02:10.464][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:02:10.467][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2025-02-08 16:02:10.468][cch$loadFileContent] file.exist = [2]: "FALSE, TRUE".
biodb.TRACE[2025-02-08 16:02:10.469][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-02-08 16:02:10.470][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:10.471][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:10.472][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:10.473][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:02:10.476][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:10.477][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:10.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:10.482][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:10.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:10.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:10.484][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:10.485][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-08 16:02:10.505][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:10.506][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:10.507][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2025-02-08 16:02:13.742][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2025-02-08 16:02:15.284][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:15.286][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2025-02-08 16:02:15.308][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.TRACE[2025-02-08 16:02:15.311][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html"
biodb.DEBUG[2025-02-08 16:02:15.312][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:15.313][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:02:15.314][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:15.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:15.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:15.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:15.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:15.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:15.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:15.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:15.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.341][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:15.342][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:15.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:15.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:15.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:15.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:15.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:15.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:15.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.390][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:15.391][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.393][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.394][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:15.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.397][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:15.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:15.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:15.443][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2025-02-08 16:02:15.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:15.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:15.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:15.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:15.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:15.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:15.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:15.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:15.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:15.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:15.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:15.474][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.474][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:02:15.475][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:15.476][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.481][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.482][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:02:15.483][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:15.483][biodb::testThat]
biodb.WARN [2025-02-08 16:02:15.503][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-08 16:02:15.517][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-08 16:02:15.526][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.527][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:02:15.528][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:15.529][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:15.548][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.555][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.558][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.561][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:15.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:15.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.564][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:15.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:15.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.575][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.582][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:15.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.589][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:15.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:15.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:15.603][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.604][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:02:15.605][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:15.605][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.614][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.615][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:02:15.615][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:15.616][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.623][biodb::testThat]
biodb.INFO [2025-02-08 16:02:15.624][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:02:15.624][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:15.625][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:15.628][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2025-02-08 16:02:16.941][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2025-02-08 16:02:18.358][biodb::testThat]
biodb.INFO [2025-02-08 16:02:18.359][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:02:18.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:18.361][biodb::testThat]
biodb.INFO [2025-02-08 16:02:18.366][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:02:18.367][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-08 16:02:18.368][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-08 16:02:18.369][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:02:18.370][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.371][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.373][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-08 16:02:18.381][biodb::testContext]
biodb.INFO [2025-02-08 16:02:18.382][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:02:18.383][biodb::testContext] Test context - Gene long tests
biodb.INFO [2025-02-08 16:02:18.383][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:02:18.384][biodb::testContext]
biodb.INFO [2025-02-08 16:02:18.386][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:02:18.387][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:02:18.391][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:18.391][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:02:18.392][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:02:18.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.402][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:02:18.403][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:02:18.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.406][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:02:18.406][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:02:18.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.409][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:02:18.410][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:02:18.411][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:02:18.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.414][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:02:18.414][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:02:18.415][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:02:18.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.418][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:02:18.419][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:02:18.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.421][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:02:18.422][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:02:18.423][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:02:18.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.426][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:02:18.427][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:02:18.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.430][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:02:18.430][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:02:18.431][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:02:18.432][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.434][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:02:18.435][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:02:18.435][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:02:18.436][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:02:18.437][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:02:18.438][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:02:18.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.441][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:02:18.441][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:02:18.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.444][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:02:18.445][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:02:18.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.448][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:02:18.449][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:02:18.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.451][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:02:18.452][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:02:18.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.455][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:02:18.456][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:02:18.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.459][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:02:18.459][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:02:18.476][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:02:18.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.479][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:02:18.480][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:02:18.481][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:02:18.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.484][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:02:18.485][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.486][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:02:18.487][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.488][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.488][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.489][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.490][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.491][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.492][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:02:18.493][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.494][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.494][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:02:18.495][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.496][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.497][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.498][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:18.498][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:18.498][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:18.498][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:02:18.498][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:02:18.499][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:18.503][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.504][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.505][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.505][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.506][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.507][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.508][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.508][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.509][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.510][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.510][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.511][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:02:18.513][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.513][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:02:18.514][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.515][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.516][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.516][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.517][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.518][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.519][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:02:18.520][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.521][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.521][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:02:18.522][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.523][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.524][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.525][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:18.525][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:18.525][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:18.525][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:02:18.525][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:02:18.526][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:18.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.527][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.528][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.530][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.531][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.532][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.532][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.533][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.534][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.535][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:02:18.536][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.537][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:02:18.538][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.539][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.539][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.540][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.541][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.542][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.543][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:02:18.544][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.544][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.545][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:02:18.546][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.547][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.548][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.548][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.549][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:18.550][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.551][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.552][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.552][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.553][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.554][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.555][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.556][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.557][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.558][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.559][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:02:18.560][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.561][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:02:18.562][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.563][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.564][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.564][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.565][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.566][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.567][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:02:18.568][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.569][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.569][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:02:18.570][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.571][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.572][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.573][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.574][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:18.575][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.575][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.576][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.577][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.578][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.579][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.579][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.580][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.581][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.582][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.583][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.584][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:18.584][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.585][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.586][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.633][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.644][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.651][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:02:18.652][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:02:18.653][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:02:18.654][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:02:18.655][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:02:18.656][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:02:18.657][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:02:18.658][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:02:18.659][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:02:18.660][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:02:18.662][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:02:18.663][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:02:18.664][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:02:18.665][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:02:18.666][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:02:18.667][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:02:18.668][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:02:18.669][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:02:18.670][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:02:18.671][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:02:18.673][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:02:18.678][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:02:18.679][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:02:18.680][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:02:18.682][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:02:18.683][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:02:18.684][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:02:18.685][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:02:18.686][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:02:18.687][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:02:18.689][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:02:18.690][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:02:18.691][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:02:18.692][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:02:18.693][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:02:18.694][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:02:18.695][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:02:18.696][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:02:18.697][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:02:18.699][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:02:18.700][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:02:18.701][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:02:18.702][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:02:18.703][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:02:18.704][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:02:18.705][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:02:18.706][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:02:18.707][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:02:18.709][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:02:18.710][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:02:18.711][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:02:18.712][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:02:18.713][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:02:18.715][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:02:18.716][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:02:18.717][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:02:18.718][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:02:18.719][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:02:18.720][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:02:18.721][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:02:18.722][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:02:18.723][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:02:18.724][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:02:18.726][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:02:18.727][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:02:18.728][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:02:18.729][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:02:18.730][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:02:18.731][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:02:18.732][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:02:18.733][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:02:18.734][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:02:18.735][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:02:18.736][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:02:18.738][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:02:18.739][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:02:18.740][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:02:18.741][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:02:18.742][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:02:18.743][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:02:18.744][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:02:18.745][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:02:18.746][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:02:18.747][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:02:18.749][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:02:18.750][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:18.750][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.752][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.754][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.758][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.769][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.773][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.774][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.778][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.779][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.782][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.783][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.788][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.792][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.796][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.797][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.798][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.799][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.804][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.806][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.809][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.813][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.814][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.815][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.826][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.827][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.828][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.833][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:18.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:18.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:18.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:18.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:18.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:18.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:18.843][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:02:18.845][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:18.850][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.851][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:02:18.852][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.853][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.854][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.854][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.855][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.856][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.857][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:02:18.858][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.859][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.860][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:02:18.860][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.861][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:02:18.861][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:02:18.862][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.863][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.864][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:02:18.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.866][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.867][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.868][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.868][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.869][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:18.869][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:02:18.870][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.871][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.872][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.873][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.874][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:02:18.875][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.876][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:02:18.877][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.878][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.879][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.879][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.880][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.881][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.882][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:18.883][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.883][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.884][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:02:18.885][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.886][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:02:18.886][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:02:18.886][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:02:18.886][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:02:18.886][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:02:18.886][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:02:18.887][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.888][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:18.888][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:02:18.889][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.890][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.891][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.892][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.893][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.893][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.894][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:18.894][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:18.895][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.896][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.896][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.897][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.898][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:02:18.900][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.901][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:02:18.901][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.902][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.903][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.904][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.904][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.905][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.906][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:18.907][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.908][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.908][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:02:18.909][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.910][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:18.911][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.911][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:18.911][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:18.911][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:18.912][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:02:18.913][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.914][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.915][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.915][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.916][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.917][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.918][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:18.918][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:18.918][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:02:18.918][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.919][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.920][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.921][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:18.922][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:02:18.923][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.924][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:02:18.925][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.926][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:18.927][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.927][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.928][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.929][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.930][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:18.931][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:18.931][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.932][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:02:18.937][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:18.938][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:02:18.938][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:02:18.938][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:18.939][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:18.940][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:02:18.941][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.942][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:18.943][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:18.944][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:18.944][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:18.945][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:18.945][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:18.945][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:02:18.946][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:18.947][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:18.947][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:18.948][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:18.949][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:02:18.950][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:02:18.951][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:02:18.953][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:02:18.954][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:02:18.955][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:02:18.961][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:02:18.962][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2025-02-08 16:02:18.963][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:02:18.964][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-08 16:02:18.965][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:18.966][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:18.967][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2025-02-08 16:02:18.968][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:18.969][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.026][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2025-02-08 16:02:19.029][biodb::testThat]
biodb.INFO [2025-02-08 16:02:19.030][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:02:19.031][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:19.032][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:19.036][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2025-02-08 16:02:19.037][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:19.040][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:19.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:19.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:19.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:19.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:19.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:19.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:19.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:19.060][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.067][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.068][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.071][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.074][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.075][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.081][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.082][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.085][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.089][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.090][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.093][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.096][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.097][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.098][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.101][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:19.148][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2025-02-08 16:02:19.150][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.153][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:19.165][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:19.191][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:19.191][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2025-02-08 16:02:19.193][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:19.204][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:02:19.205][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.206][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:02:19.215][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.216][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.217][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:02:19.218][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.219][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2025-02-08 16:02:19.220][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.220][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-08 16:02:19.230][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2025-02-08 16:02:19.231][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2025-02-08 16:02:19.232][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:19.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2025-02-08 16:02:19.235][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:19.237][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2025-02-08 16:02:19.238][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:19.239][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:19.240][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:19.241][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:19.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:19.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:19.283][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:19.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:19.284][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:19.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:19.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.300][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:19.301][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.304][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:19.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:19.339][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2025-02-08 16:02:19.339][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.343][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.346][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.349][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:19.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:19.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.352][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:19.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:19.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:19.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:19.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.359][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:19.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.376][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.428][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.429][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.443][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.446][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.457][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.458][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.460][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.470][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.473][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.479][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.480][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.482][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.492][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.496][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.499][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.502][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.503][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.505][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.522][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.525][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.525][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.543][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.546][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.551][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.552][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.555][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.564][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:19.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.574][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.575][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.577][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.588][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:19.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.591][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.595][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.598][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:19.599][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.601][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:19.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.611][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.612][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.623][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.624][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.629][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.636][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.637][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.642][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.643][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.644][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.649][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:19.650][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.651][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.655][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.656][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.662][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.663][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.671][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2025-02-08 16:02:19.672][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:19.673][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:19.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:19.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:19.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:19.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:19.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:19.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:19.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:19.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.694][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.699][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.700][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.703][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:19.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:19.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.707][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.708][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.711][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:19.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:19.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.718][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.719][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.722][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:19.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:19.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.725][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.726][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.729][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:19.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:19.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.732][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.732][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.736][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:19.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:19.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.759][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:19.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:19.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:19.774][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2025-02-08 16:02:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:19.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:19.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:19.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:19.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:19.802][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:19.813][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2025-02-08 16:02:19.850][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:19.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2025-02-08 16:02:19.863][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:02:19.864][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:19.865][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:19.866][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:19.866][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:19.867][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:02:19.869][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:19.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:19.871][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:19.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:19.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:19.876][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:19.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:19.878][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2025-02-08 16:02:19.880][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:19.880][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:19.881][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2025-02-08 16:02:21.198][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2025-02-08 16:02:22.654][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:22.656][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2025-02-08 16:02:22.659][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2025-02-08 16:02:22.662][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2025-02-08 16:02:22.663][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:22.664][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:22.665][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:22.666][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:22.667][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:22.668][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:22.672][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:22.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:22.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:22.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:22.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.688][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:22.689][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.692][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:22.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:22.733][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2025-02-08 16:02:22.741][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.747][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.753][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:22.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:22.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.756][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:22.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:22.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.759][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:22.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:22.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:22.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.823][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.824][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.826][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:22.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:22.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.836][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:22.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.840][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.842][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.846][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:22.847][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.849][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:22.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:22.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.864][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:22.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.870][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.873][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:22.874][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.876][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:22.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:22.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.886][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.890][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.893][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.896][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.897][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.899][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:22.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.909][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.918][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.919][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:22.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.932][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:22.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:22.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.939][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:22.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:22.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.943][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:22.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:22.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.946][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:22.947][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:22.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:22.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:22.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.958][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:22.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:22.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:22.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:22.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:22.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:22.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.968][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:22.969][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:22.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.971][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:22.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:22.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.981][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:22.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.984][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.987][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.990][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:22.991][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:22.993][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:22.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:22.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:22.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.003][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.004][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.009][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.010][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.020][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.027][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.028][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.028][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.029][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.033][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.034][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.039][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:23.040][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.046][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.047][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.052][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.053][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.064][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2025-02-08 16:02:23.065][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:23.066][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:23.067][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:23.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:23.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:23.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:23.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:23.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:23.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:23.091][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.099][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.100][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.103][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.106][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.107][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.108][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.110][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.113][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.114][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.117][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.124][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.125][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.128][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.132][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.132][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.137][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.145][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:23.176][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2025-02-08 16:02:23.178][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:23.193][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:23.193][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2025-02-08 16:02:23.194][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:23.195][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2025-02-08 16:02:23.197][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:23.198][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2025-02-08 16:02:23.203][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:23.204][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:23.205][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:23.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:23.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:23.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:23.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:23.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:23.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:23.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:23.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.225][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:23.226][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.229][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:23.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:23.264][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2025-02-08 16:02:23.265][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.267][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.271][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:23.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:23.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:23.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:23.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.285][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:23.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:23.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.288][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:23.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:23.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.350][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.368][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.375][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.378][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.379][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.381][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.391][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.394][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.397][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.400][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.401][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.413][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.416][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.419][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.422][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.422][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.424][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.449][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.449][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.464][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.467][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.470][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.471][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.473][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.483][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:23.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:23.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.493][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.493][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.496][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:23.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.509][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.512][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.519][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:23.520][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.523][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:23.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.533][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.534][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.535][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.539][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.540][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.541][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.542][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.546][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.547][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.552][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.553][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.554][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.554][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.559][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.559][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.560][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.561][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.565][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:23.566][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.571][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.572][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.573][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.578][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.579][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.579][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.588][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2025-02-08 16:02:23.589][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:23.590][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:23.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:23.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:23.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:23.597][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:23.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:23.598][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:23.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:23.611][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.612][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.623][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.624][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.627][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:23.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:23.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.630][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.631][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.634][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:23.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:23.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.637][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.638][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.641][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:23.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:23.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.644][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.645][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:23.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:23.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.651][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.652][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.654][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.656][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:23.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:23.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:23.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:23.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:23.701][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2025-02-08 16:02:23.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.706][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:23.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.712][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:23.715][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:23.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:23.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:23.718][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:23.719][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2025-02-08 16:02:23.720][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:23.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2025-02-08 16:02:23.722][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:02:23.723][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:23.724][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:23.725][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:23.725][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:23.726][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:02:23.737][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:23.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:23.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:23.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:23.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:23.745][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:23.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:23.760][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2025-02-08 16:02:23.776][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:23.777][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:23.789][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2025-02-08 16:02:25.273][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2025-02-08 16:02:26.669][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:26.671][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2025-02-08 16:02:26.674][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2025-02-08 16:02:26.676][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2025-02-08 16:02:26.677][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:26.678][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:26.679][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:26.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:26.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:26.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:26.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:26.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:26.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:26.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:26.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.702][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:26.703][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.705][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:26.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:26.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:26.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:26.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:26.875][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2025-02-08 16:02:26.876][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.878][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.881][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:26.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.884][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:26.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:26.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.887][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:26.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:26.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.889][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:26.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:26.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.892][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:26.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:26.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.911][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.918][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.931][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.950][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.950][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:26.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:26.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.963][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:26.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.966][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.969][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.972][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:26.973][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.975][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.975][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:26.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:26.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.986][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:26.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:26.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.989][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:26.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:26.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:26.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.996][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:26.997][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:26.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:26.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:26.999][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:27.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:27.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.009][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.012][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.016][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.019][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.020][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.022][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.042][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.043][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.055][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.058][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.061][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.065][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.066][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.068][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.078][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:27.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:27.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.088][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:27.088][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.091][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:27.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:27.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.104][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.107][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.110][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:27.111][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.114][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:27.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.124][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.125][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.132][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:27.133][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:27.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.140][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.141][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.148][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.153][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.154][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.159][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:27.160][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:27.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.165][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:27.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.171][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.172][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.173][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.177][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.178][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.190][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2025-02-08 16:02:27.191][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:27.192][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:27.193][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:27.194][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:27.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:27.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:27.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:27.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:27.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:27.229][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.230][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.236][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.237][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.240][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:27.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:27.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.243][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:27.244][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:27.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.247][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:27.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:27.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.250][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:27.251][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:27.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:27.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.257][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:27.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.261][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:27.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:27.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.264][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.265][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:27.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:27.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:27.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:27.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:27.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:27.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:27.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:27.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:27.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:27.309][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2025-02-08 16:02:27.311][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:27.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:27.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:27.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:27.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:27.325][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:27.326][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2025-02-08 16:02:27.326][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:27.327][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2025-02-08 16:02:27.328][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:02:27.329][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:27.330][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:27.331][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:27.332][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:27.332][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:02:27.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:27.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:27.336][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:27.340][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:27.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:27.342][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:27.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:27.343][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2025-02-08 16:02:27.345][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:27.346][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:27.347][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2025-02-08 16:02:28.845][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2025-02-08 16:02:30.335][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:30.337][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2025-02-08 16:02:30.340][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2025-02-08 16:02:30.342][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2025-02-08 16:02:30.344][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:30.345][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:30.346][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:30.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:30.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:30.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:30.353][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:30.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:30.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:30.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:30.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.374][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:30.375][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.377][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.378][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:30.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:30.412][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2025-02-08 16:02:30.413][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.416][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.420][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.423][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:30.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:30.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:30.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:30.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.506][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.507][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:30.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.521][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.524][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.527][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:30.527][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.529][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:30.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.539][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:30.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.542][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.545][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.547][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:30.548][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.550][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.550][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:30.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.560][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.563][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.566][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.569][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.570][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.572][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.590][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.591][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.593][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.605][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.608][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.611][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.612][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.624][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:30.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:30.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:30.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.633][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:30.634][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:30.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.645][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:30.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.649][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.652][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.655][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:30.655][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.657][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.667][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.668][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.673][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.674][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.679][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.680][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.686][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.686][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.692][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.692][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.698][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:30.699][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.700][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.704][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.704][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.710][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.710][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.718][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2025-02-08 16:02:30.719][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:30.720][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:30.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:30.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:30.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:30.726][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:30.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:30.727][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:30.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:30.736][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.743][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.743][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.746][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.749][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:30.750][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.751][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.753][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:30.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:30.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.756][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:30.756][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.759][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:30.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:30.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.762][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:30.763][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:30.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:30.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.769][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.770][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.778][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.796][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:30.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:30.813][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2025-02-08 16:02:30.814][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:30.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.820][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:30.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:30.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:30.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:30.828][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:30.829][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2025-02-08 16:02:30.830][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:30.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2025-02-08 16:02:30.832][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:02:30.833][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:30.834][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:30.835][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:30.835][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:30.836][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:02:30.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:30.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:30.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:30.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:30.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:30.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:30.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:30.847][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2025-02-08 16:02:30.849][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:30.849][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:30.850][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2025-02-08 16:02:32.304][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2025-02-08 16:02:33.717][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:33.719][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2025-02-08 16:02:33.722][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2025-02-08 16:02:33.724][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2025-02-08 16:02:33.725][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:33.726][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:33.727][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:33.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:33.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:33.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:33.734][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:33.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:33.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:33.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.753][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:33.754][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:33.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:33.788][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2025-02-08 16:02:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.792][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.795][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:33.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.803][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:33.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:33.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:33.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:33.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.876][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:33.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.879][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.882][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.885][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:33.885][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.887][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.887][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:33.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:33.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.897][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:33.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.899][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.905][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:33.906][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:33.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:33.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.917][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.930][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.933][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.934][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.936][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.953][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.954][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.956][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:33.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.965][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:33.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:33.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.970][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:33.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:33.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.973][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:33.974][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:33.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.975][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.976][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:33.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:33.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.985][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:33.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.993][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:33.994][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:33.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:33.996][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:33.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:33.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.005][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.011][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.014][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:34.014][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.016][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:34.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.026][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.026][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.032][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:34.032][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:34.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.038][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.038][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.044][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:34.045][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:34.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.050][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:34.050][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:34.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.055][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:34.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:34.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.061][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.062][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.063][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.067][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:34.068][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:34.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.075][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2025-02-08 16:02:34.076][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:34.077][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:34.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:34.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:34.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:34.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:34.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:34.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:34.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:34.093][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.094][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.099][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:34.100][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:34.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.102][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:34.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:34.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.105][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:34.106][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:34.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:34.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:34.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.111][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:34.112][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:34.113][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.114][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.115][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:34.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:34.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.118][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:34.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:34.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.121][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:34.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:34.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.124][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:34.124][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:34.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.128][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:34.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:34.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:34.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:34.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:34.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:34.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:34.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:34.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:34.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:34.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:34.163][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2025-02-08 16:02:34.165][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.167][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:34.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:34.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:34.179][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2025-02-08 16:02:34.180][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2025-02-08 16:02:34.180][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:34.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2025-02-08 16:02:34.182][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:02:34.183][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:34.184][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:34.185][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:34.186][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:34.186][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2025-02-08 16:02:34.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:34.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:34.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:34.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:34.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:34.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:34.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:34.197][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2025-02-08 16:02:34.199][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:34.200][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:34.201][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2025-02-08 16:02:35.584][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2025-02-08 16:02:37.965][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:37.975][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2025-02-08 16:02:37.978][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2025-02-08 16:02:37.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2025-02-08 16:02:37.981][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:37.982][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:37.983][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2025-02-08 16:02:37.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:37.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:37.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:37.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:37.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:37.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:37.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:38.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.005][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:38.006][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:38.039][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2025-02-08 16:02:38.040][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.043][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.046][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.055][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:38.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.058][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:38.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.115][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.127][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.130][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.133][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.136][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.137][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.139][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.152][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.157][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.158][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.160][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.169][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.175][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.178][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.179][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.181][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.199][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.200][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.218][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.220][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.221][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.223][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:38.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.242][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:38.242][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.244][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:38.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.259][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:38.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.262][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.265][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.268][ef$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:38.269][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2025-02-08 16:02:38.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.280][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.281][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.282][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.287][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.287][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.293][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.293][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.299][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.300][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.305][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.305][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.311][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:38.312][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.317][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.318][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.324][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.325][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.331][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2025-02-08 16:02:38.332][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:38.333][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:38.334][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:38.335][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:38.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:38.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:38.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:38.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:38.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:38.343][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.349][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.350][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.356][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.357][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.359][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.360][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.362][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.365][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.368][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.369][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.375][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:38.402][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2025-02-08 16:02:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.407][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:38.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:38.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:38.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:38.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.422][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:38.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:38.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.484][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.485][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.496][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.505][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.506][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.508][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.518][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.524][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.527][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.528][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.529][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.540][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.541][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.551][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.552][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.557][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.558][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.559][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:38.566][biodb::testThat]
biodb.INFO [2025-02-08 16:02:38.567][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:02:38.568][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:38.568][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:38.570][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2025-02-08 16:02:38.571][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2025-02-08 16:02:38.572][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2025-02-08 16:02:38.574][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-08 16:02:38.606][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2025-02-08 16:02:38.607][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:38.608][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2025-02-08 16:02:38.609][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2025-02-08 16:02:38.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:38.611][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:38.612][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:38.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:38.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:38.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:38.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:38.630][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.637][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.637][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.638][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.643][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.644][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.647][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.650][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.651][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.654][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.657][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.658][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.663][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.664][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.668][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:38.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:38.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:38.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:38.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:38.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:38.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:38.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:38.714][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.721][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.722][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.723][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.724][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.727][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.728][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.731][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.734][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.734][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.736][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.737][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.740][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.740][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.743][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.746][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.747][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.751][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:38.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:38.780][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:38.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:38.785][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:38.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:38.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:38.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:38.804][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.805][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.808][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.811][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.812][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.815][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.818][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.819][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.822][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.825][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.826][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.832][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.833][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.836][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.839][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.840][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.844][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.861][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.864][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:38.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:38.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:38.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:38.879][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:38.880][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:38.880][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:38.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:38.895][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.896][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.897][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.902][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.903][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:38.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.909][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.910][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.913][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:38.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:38.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.916][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.916][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.929][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.932][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:38.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:38.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.935][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.938][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:38.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.941][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.941][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.945][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:38.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:38.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:38.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:38.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:38.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:38.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:38.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:38.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:38.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:38.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:38.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:39.007][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.008][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.015][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.016][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.017][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.020][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.023][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.023][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.027][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.030][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.031][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.031][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.034][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.037][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.042][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.045][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.046][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.046][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.053][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.086][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:39.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:39.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:39.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:39.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:39.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:39.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:39.102][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.103][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.108][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.109][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.111][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.115][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.115][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.118][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.121][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.122][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.125][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.128][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.128][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.129][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.131][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.134][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.135][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.138][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:39.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:39.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:39.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:39.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:39.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:39.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:39.183][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.184][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.186][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.190][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.191][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.194][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.197][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.198][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.204][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.205][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.211][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.212][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.217][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.218][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:39.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:39.252][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:39.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:39.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:39.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:39.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:39.260][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.261][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.266][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.280][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.281][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.282][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-08 16:02:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-08 16:02:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.285][ef$get] Asked field names are: location.
biodb.TRACE[2025-02-08 16:02:39.286][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2025-02-08 16:02:39.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.288][ef$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.289][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.291][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2025-02-08 16:02:39.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2025-02-08 16:02:39.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.294][ef$get] Asked field names are: synonyms.
biodb.TRACE[2025-02-08 16:02:39.294][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.297][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.297][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2025-02-08 16:02:39.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2025-02-08 16:02:39.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.321][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.380][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:39.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:39.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.395][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2025-02-08 16:02:39.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.398][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.435][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.459][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.462][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.486][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:39.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:39.498][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.499][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:02:39.500][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:39.500][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:39.503][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.505][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.506][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2025-02-08 16:02:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.522][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.527][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2025-02-08 16:02:39.531][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-08 16:02:39.533][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:39.534][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-02-08 16:02:39.535][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:39.536][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2025-02-08 16:02:39.537][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2025-02-08 16:02:39.551][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.551][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:02:39.552][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:39.553][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:39.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:39.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.592][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2025-02-08 16:02:39.595][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:39.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2025-02-08 16:02:39.597][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:39.597][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2025-02-08 16:02:39.611][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.612][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:02:39.612][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:39.613][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:39.621][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:39.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:39.635][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2025-02-08 16:02:39.636][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.641][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:39.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.657][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:39.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:39.672][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:39.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:39.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:39.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:39.681][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.682][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:02:39.682][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:39.683][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.692][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.693][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:02:39.694][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:39.695][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.701][biodb::testThat]
biodb.INFO [2025-02-08 16:02:39.702][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:02:39.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:39.703][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:39.706][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2025-02-08 16:02:42.427][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2025-02-08 16:02:45.623][biodb::testThat]
biodb.INFO [2025-02-08 16:02:45.624][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:02:45.625][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:45.626][biodb::testThat]
biodb.INFO [2025-02-08 16:02:45.631][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:02:45.632][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2025-02-08 16:02:45.633][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2025-02-08 16:02:45.634][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2025-02-08 16:02:45.639][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2025-02-08 16:02:45.640][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:02:45.640][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.642][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.643][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-08 16:02:45.647][biodb::testContext]
biodb.INFO [2025-02-08 16:02:45.647][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:02:45.648][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2025-02-08 16:02:45.649][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:02:45.649][biodb::testContext]
biodb.INFO [2025-02-08 16:02:45.651][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:02:45.652][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:02:45.655][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:45.656][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:02:45.656][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:02:45.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.659][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:02:45.660][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:02:45.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.662][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:02:45.663][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:02:45.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.666][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:02:45.666][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:02:45.667][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:02:45.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.670][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:02:45.670][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:02:45.671][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:02:45.672][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.674][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:02:45.674][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:02:45.675][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.677][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:02:45.678][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:02:45.679][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:02:45.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.681][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:02:45.682][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:02:45.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.684][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:02:45.685][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:02:45.686][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:02:45.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.689][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:02:45.689][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:02:45.690][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:02:45.691][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:02:45.692][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:02:45.692][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:02:45.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.695][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:02:45.696][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:02:45.697][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.699][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:02:45.700][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:02:45.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.702][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:02:45.703][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:02:45.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.706][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:02:45.706][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:02:45.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.709][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:02:45.710][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:02:45.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.712][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:02:45.713][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:02:45.729][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:02:45.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.732][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:02:45.732][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:02:45.733][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:02:45.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.736][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:02:45.737][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.738][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:02:45.739][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.739][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:45.740][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.741][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.741][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.742][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.743][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:02:45.744][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:45.744][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.745][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:02:45.746][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:45.746][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.747][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.748][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:45.748][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:45.748][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:45.748][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:02:45.748][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:02:45.749][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:45.749][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.750][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.751][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:45.751][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.752][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.753][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.753][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.754][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:45.762][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:45.763][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.763][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.764][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:02:45.765][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.766][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:02:45.767][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.767][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:45.768][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.769][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.769][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.770][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.771][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:02:45.771][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:45.772][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.773][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:02:45.773][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:45.774][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.775][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.775][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:45.775][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:45.775][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:45.775][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:02:45.775][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:02:45.776][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:45.777][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.777][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.778][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:45.779][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.779][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.780][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.781][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.781][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:45.782][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:45.783][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.784][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.784][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:02:45.786][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.786][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:02:45.787][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.788][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:45.789][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.789][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.790][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.791][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.791][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:02:45.792][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:45.793][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.794][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:02:45.794][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:45.795][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.796][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.797][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.797][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:45.798][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.799][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.799][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:45.800][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.801][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.801][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.802][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.803][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:45.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:45.804][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.805][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.806][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:02:45.807][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.808][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:02:45.808][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.809][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:45.810][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.810][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.811][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.812][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.812][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:02:45.813][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:45.814][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.814][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:02:45.815][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:45.816][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.817][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:45.817][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.818][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:02:45.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.819][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.820][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:45.821][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:45.821][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:45.822][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:45.823][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.823][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:45.824][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:45.825][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:45.825][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:45.826][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:45.827][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.847][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.855][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.857][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.864][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.868][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.880][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.883][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:02:45.885][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:02:45.886][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:02:45.887][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:02:45.888][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:02:45.889][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:02:45.890][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:02:45.891][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:02:45.892][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:02:45.893][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:02:45.894][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:02:45.895][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:02:45.896][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:02:45.897][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:02:45.898][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:02:45.899][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:02:45.900][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:02:45.901][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:02:45.902][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:02:45.903][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:02:45.904][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:02:45.905][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:02:45.906][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:02:45.907][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:02:45.908][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:02:45.909][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:02:45.910][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:02:45.911][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:02:45.912][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:02:45.913][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:02:45.914][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:02:45.915][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:02:45.916][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:02:45.917][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:02:45.918][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:02:45.919][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:02:45.920][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:02:45.921][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:02:45.922][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:02:45.923][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:02:45.924][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:02:45.925][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:02:45.926][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:02:45.927][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:02:45.928][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:02:45.929][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:02:45.930][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:02:45.931][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:02:45.932][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:02:45.933][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:02:45.934][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:02:45.935][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:02:45.936][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:02:45.937][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:02:45.938][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:02:45.939][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:02:45.940][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:02:45.941][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:02:45.942][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:02:45.943][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:02:45.944][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:02:45.945][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:02:45.946][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:02:45.947][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:02:45.948][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:02:45.949][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:02:45.950][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:02:45.951][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:02:45.952][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:02:45.953][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:02:45.954][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:02:45.955][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:02:45.956][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:02:45.957][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:02:45.958][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:02:45.959][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:02:45.960][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:02:45.961][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:02:45.962][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:02:45.963][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:02:45.964][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:02:45.965][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:02:45.966][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:02:45.967][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:02:45.968][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:02:45.969][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:02:45.970][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.970][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.971][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.983][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.986][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.990][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.991][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.994][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:45.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:45.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:45.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:45.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:45.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:45.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:45.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.004][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.012][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.013][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.014][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.020][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.026][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.027][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:02:46.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.047][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:46.051][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:02:46.053][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:02:46.054][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.055][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:02:46.055][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.056][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:46.057][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.058][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.059][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.059][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.060][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:02:46.061][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:46.061][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.062][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:02:46.063][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:46.064][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:02:46.064][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:02:46.064][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:46.065][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:46.066][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:02:46.066][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.067][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.068][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:46.068][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.069][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.070][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.070][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:02:46.070][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:02:46.071][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:46.072][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:46.072][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.073][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:46.074][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:02:46.075][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.076][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:02:46.077][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.077][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:46.078][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.079][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.080][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.081][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.081][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:46.082][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:46.083][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.084][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:02:46.085][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:02:46.086][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:46.087][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:46.088][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:02:46.088][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.089][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.090][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:46.091][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.091][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.092][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.093][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:46.093][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:46.094][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:46.094][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:46.095][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.096][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:46.096][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:02:46.098][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:46.099][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:02:46.100][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.100][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:46.101][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.102][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.102][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.103][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.104][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:46.104][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:46.105][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.106][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.107][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:02:46.108][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:46.109][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:02:46.109][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:02:46.109][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:02:46.110][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:02:46.110][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.111][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.112][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:46.112][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.113][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.114][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.114][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:46.114][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:46.114][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:02:46.115][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:46.116][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:46.116][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.117][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:46.118][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:02:46.120][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.121][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:02:46.121][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.122][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:02:46.123][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.123][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.124][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.125][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.125][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:02:46.126][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:02:46.127][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.128][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:02:46.128][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:02:46.129][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:02:46.129][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:02:46.130][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:02:46.130][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:02:46.131][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:02:46.132][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.133][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.133][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:02:46.134][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:02:46.135][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:02:46.136][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:02:46.137][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:46.137][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:02:46.137][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:02:46.137][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:02:46.138][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:02:46.139][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:02:46.139][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:46.140][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:02:46.141][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:02:46.142][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:02:46.143][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:02:46.144][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:02:46.146][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:02:46.151][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:02:46.152][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2025-02-08 16:02:46.153][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:02:46.154][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-08 16:02:46.155][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:02:46.155][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:02:46.156][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2025-02-08 16:02:46.157][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:02:46.158][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:02:46.159][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:02:46.163][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2025-02-08 16:02:46.166][biodb::testThat]
biodb.INFO [2025-02-08 16:02:46.167][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:02:46.168][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:46.168][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:46.170][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2025-02-08 16:02:46.171][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:46.173][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:46.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:46.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:46.185][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.186][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.192][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.193][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.194][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.199][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.200][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.206][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.207][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.214][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.219][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.220][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.226][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.226][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.229][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.232][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.232][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.238][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.238][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.243][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.244][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.246][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.249][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.250][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.252][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.256][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.257][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.262][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.263][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.268][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.269][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.271][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.279][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:46.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.287][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:46.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.304][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:46.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:46.352][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2025-02-08 16:02:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:46.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:46.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:46.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:46.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.366][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:46.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:46.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.369][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:46.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:46.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.432][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.444][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.454][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.477][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.477][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.479][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.480][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.493][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.499][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.500][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.511][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.518][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.521][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.521][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.523][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.546][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.547][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.567][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.568][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.589][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.589][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.610][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.611][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.632][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.633][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.653][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.654][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.675][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.676][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.677][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.696][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.719][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.720][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.732][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.741][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.742][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.754][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.754][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.760][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.761][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.767][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.767][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.773][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.774][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.780][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.786][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.786][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.792][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.792][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.798][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.798][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.804][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.804][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.810][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.811][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.816][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.828][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.834][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.834][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.840][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.841][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.846][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.847][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.852][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2025-02-08 16:02:46.853][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:46.854][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:46.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:46.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:46.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:46.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:46.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:46.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:46.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:46.864][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.866][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.870][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.871][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.872][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.876][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.877][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.883][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.883][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.889][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.890][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.895][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.895][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.897][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.901][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.901][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:46.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:46.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.907][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:46.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:46.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.913][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.913][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:46.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.919][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.920][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.925][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.925][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:46.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:46.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.931][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.932][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:46.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.937][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.938][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:46.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.943][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.944][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.944][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.945][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.946][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.949][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:46.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:46.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.958][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:46.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.967][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.984][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:46.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:46.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:46.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:46.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:46.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:46.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:46.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.002][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:47.026][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2025-02-08 16:02:47.034][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:47.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:47.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:47.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:47.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.043][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.048][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:47.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:47.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.051][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:47.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.113][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.129][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.135][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.135][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.154][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.157][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.158][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.169][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.172][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.179][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.179][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.181][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.182][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.201][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.202][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.204][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.224][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.225][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.241][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.248][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.272][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.286][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.296][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.297][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.320][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.321][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.343][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.344][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.394][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.394][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.396][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.397][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.416][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.417][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.439][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.440][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.452][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.453][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.458][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.459][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.465][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.466][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.471][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.472][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.478][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.479][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.491][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.492][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.499][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.504][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.511][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.512][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.518][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.525][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.530][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.538][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.544][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.544][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.546][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:47.553][biodb::testThat]
biodb.INFO [2025-02-08 16:02:47.554][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:02:47.555][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:47.555][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:47.557][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2025-02-08 16:02:47.558][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:02:47.560][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2025-02-08 16:02:47.562][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2025-02-08 16:02:47.564][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2025-02-08 16:02:47.565][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:47.566][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:02:47.567][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:47.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:47.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:47.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:47.574][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:47.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:47.576][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:47.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:47.579][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.579][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.581][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.585][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.586][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.588][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.591][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.592][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.597][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.598][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.603][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.604][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.605][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.609][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.610][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.616][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:47.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:47.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.622][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.623][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.628][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.629][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.634][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.635][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.636][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.637][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.639][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.640][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.642][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.645][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:47.646][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:47.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.651][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.652][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.657][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.658][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.660][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:47.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:47.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:47.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.701][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:47.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.719][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:47.733][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:47.734][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:47.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:47.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:47.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:47.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:47.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:47.743][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.749][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.749][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.750][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.751][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.754][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.761][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.761][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.767][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.769][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.773][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.773][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.774][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.778][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:47.779][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.784][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.785][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:47.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:47.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.791][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.797][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.802][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.803][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.805][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.808][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:47.809][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.809][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.810][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:47.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:47.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.814][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.815][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.817][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:47.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.820][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.821][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:47.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:47.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:47.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.834][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:47.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:47.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.843][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:47.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:47.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.852][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:47.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.861][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:47.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:47.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:47.911][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2025-02-08 16:02:47.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:47.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.922][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.928][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:02:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:02:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:47.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:02:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:47.944][biodb::testThat]
biodb.INFO [2025-02-08 16:02:47.945][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:02:47.945][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:47.946][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:47.948][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.949][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.951][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:47.952][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2025-02-08 16:02:47.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:47.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:47.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:47.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:47.983][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2025-02-08 16:02:47.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:02:47.989][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:47.990][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:02:47.991][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:47.993][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-08 16:02:47.994][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2025-02-08 16:02:48.005][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.006][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.008][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:48.009][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:48.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.011][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:48.014][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.015][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:02:48.016][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.017][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:48.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:48.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:02:48.058][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:48.059][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:02:48.060][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:48.061][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2025-02-08 16:02:48.076][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.077][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:02:48.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.079][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:48.087][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.090][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:48.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:48.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.102][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:48.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:48.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.105][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.108][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.112][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:02:48.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:48.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:02:48.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.118][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.122][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:02:48.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:48.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:02:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:02:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:48.136][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.136][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:02:48.137][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.138][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.145][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.146][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:02:48.146][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.147][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.154][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.155][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:02:48.155][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.156][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:48.159][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2025-02-08 16:02:48.364][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2025-02-08 16:02:48.536][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.537][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:02:48.537][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.538][biodb::testThat]
biodb.DEBUG[2025-02-08 16:02:48.677][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2025-02-08 16:02:48.751][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.752][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.754][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.755][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.756][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:48.758][biodb::testThat]
biodb.INFO [2025-02-08 16:02:48.758][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2025-02-08 16:02:48.759][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:48.760][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:48.857][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:02:48.860][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:48.861][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:02:48.862][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:48.863][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2025-02-08 16:02:48.917][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2025-02-08 16:02:48.920][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:48.921][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2025-02-08 16:02:48.922][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:48.923][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2025-02-08 16:02:48.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:48.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:48.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.941][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:48.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:48.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:48.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:48.961][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:48.964][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:48.965][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:02:48.966][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:48.968][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:02:48.980][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:02:48.983][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:48.984][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2025-02-08 16:02:48.985][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:48.987][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2025-02-08 16:02:49.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:02:49.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2025-02-08 16:02:49.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.233][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2025-02-08 16:02:49.251][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:02:49.254][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.255][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2025-02-08 16:02:49.256][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.257][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2025-02-08 16:02:49.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.275][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.279][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.285][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:49.292][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:49.295][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.296][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2025-02-08 16:02:49.297][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.298][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2025-02-08 16:02:49.310][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:02:49.313][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.314][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2025-02-08 16:02:49.315][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.316][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2025-02-08 16:02:49.329][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:02:49.332][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2025-02-08 16:02:49.334][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.335][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2025-02-08 16:02:49.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2025-02-08 16:02:49.357][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2025-02-08 16:02:49.359][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.360][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2025-02-08 16:02:49.375][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:49.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:49.384][biodb::testThat]
biodb.INFO [2025-02-08 16:02:49.385][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2025-02-08 16:02:49.386][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:49.386][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:49.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.392][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:49.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:49.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:49.420][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:49.421][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:49.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:49.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:49.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:49.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:49.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:49.433][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:49.436][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:49.437][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:02:49.438][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:49.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:02:49.440][private$loadEntries] Creating entries from ids [3]: "172631573, 172608227, 172593299".
biodb.DEBUG[2025-02-08 16:02:49.441][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:02:49.442][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172631573, 172608227, 172593299".
biodb.TRACE[2025-02-08 16:02:49.443][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-08 16:02:49.445][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172631573.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172608227.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172593299.xml".
biodb.DEBUG[2025-02-08 16:02:49.446][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:49.447][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:02:49.448][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:49.449][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:49.450][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:49.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:49.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:49.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:49.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:49.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:49.459][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.460][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.473][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.474][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.479][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.480][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.485][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.486][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.492][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.497][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.498][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.503][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:49.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.506][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.508][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:49.509][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:49.510][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:49.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.514][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:49.515][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:49.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.521][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.527][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:49.528][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:49.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.533][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:49.534][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.536][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:49.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.539][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.540][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.545][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.546][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.546][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.547][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:49.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.569][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:49.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.578][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:49.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:49.619][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:49.620][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:49.620][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:49.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:49.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:49.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:49.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:49.628][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.629][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.635][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.636][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.641][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.642][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.647][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.648][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.649][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.653][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.654][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.660][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.666][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:49.667][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.672][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:49.673][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:49.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.678][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:49.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:49.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.685][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.687][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.690][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:49.691][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:49.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.693][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:49.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.696][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:49.697][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.699][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:49.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.702][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.703][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.708][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.709][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.719][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:49.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.727][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:49.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.736][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:49.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.745][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:49.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:49.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.783][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:49.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:49.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:49.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:49.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:49.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:49.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:49.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:49.797][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.803][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.804][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.809][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.810][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.816][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.816][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.822][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.823][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.828][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.829][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.834][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:49.835][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.837][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:49.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:49.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.840][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:49.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:49.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.843][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:49.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:49.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.846][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:49.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:49.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.852][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.856][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:49.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.859][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:49.860][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:49.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.862][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:49.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:49.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.866][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:49.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:49.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.872][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.873][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.878][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.879][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.880][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:49.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:49.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:49.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.921][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:49.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:49.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:49.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:49.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:49.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:49.983][self$createEntryFromContent] Accession numbers: 172631573, 172608227, 172593299.
biodb.DEBUG[2025-02-08 16:02:49.984][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:49.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:49.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:49.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:49.991][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:49.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:49.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:49.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:49.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:49.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.000][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.000][private$selectFields]
biodb.TRACE[2025-02-08 16:02:50.001][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:50.002][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:50.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.003][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.004][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.005][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.006][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.010][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.014][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:50.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.029][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:02:50.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:50.031][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:50.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:50.036][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:50.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:50.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:50.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:50.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.046][private$selectFields]
biodb.TRACE[2025-02-08 16:02:50.046][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:50.047][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:50.048][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.053][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.055][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.058][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:50.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.068][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:02:50.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:50.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:50.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:50.075][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:50.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:50.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:50.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.084][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.085][private$selectFields]
biodb.TRACE[2025-02-08 16:02:50.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:50.086][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:50.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.088][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.089][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.090][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.091][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.093][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.094][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:50.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.096][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.098][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:50.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.108][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:02:50.109][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:50.110][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:50.112][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:50.112][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:50.113][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:50.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:50.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:50.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:50.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:50.124][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:50.126][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:50.127][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:50.128][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:50.264][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:50.265][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:50.266][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:50.267][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:50.381][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:50.383][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2025-02-08 16:02:50.386][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2025-02-08 16:02:50.387][private$loadEntries] Creating entries from ids [3]: "172642450, 172529292, 172529260".
biodb.DEBUG[2025-02-08 16:02:50.388][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:02:50.389][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172642450, 172529292, 172529260".
biodb.TRACE[2025-02-08 16:02:50.390][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:50.391][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:50.392][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:50.393][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:50.393][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:50.394][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:50.395][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:02:50.396][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.DEBUG[2025-02-08 16:02:50.398][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:50.399][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:50.400][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML".
biodb.TRACE[2025-02-08 16:02:50.508][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172642450,172529292,172529260/XML).
biodb.TRACE[2025-02-08 16:02:50.689][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172642450.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529292.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172529260.xml"
biodb.DEBUG[2025-02-08 16:02:50.692][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:50.693][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:02:50.694][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:50.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:50.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:50.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:50.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:50.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:50.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:50.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:50.706][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.707][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.712][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.713][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.718][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.719][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.724][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.725][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.731][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.731][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.737][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.743][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.748][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.753][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:50.754][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:50.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:50.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:50.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:50.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:50.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:50.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.766][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:50.766][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:50.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:50.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:50.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.778][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:50.779][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:50.780][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.781][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:50.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:50.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.784][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:50.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:50.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:50.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:50.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.790][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.791][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.797][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.797][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.822][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.831][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:50.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:50.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:50.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:50.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.866][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:50.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:50.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:50.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:50.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:50.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:50.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:50.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:50.885][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.886][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:50.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.892][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.893][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.898][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.899][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.900][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:50.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.905][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.906][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.911][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:50.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.917][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.918][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.920][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.924][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:50.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:50.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.927][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:50.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:50.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.930][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:50.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:50.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.934][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:50.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:50.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.937][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:50.938][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:50.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.940][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:50.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:50.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.943][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.944][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.945][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:50.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.950][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:50.951][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:50.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.953][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:50.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:50.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.956][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:50.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:50.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:50.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:50.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.964][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.964][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.967][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:50.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.970][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.971][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:50.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:50.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:50.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:50.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:50.996][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:50.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:50.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:50.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:51.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:51.056][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.068][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.074][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.075][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.077][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.081][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.082][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.088][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.089][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.090][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.095][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.096][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.101][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.102][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.108][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.109][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.110][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.115][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.122][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.128][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.129][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.135][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.136][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.142][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.142][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.148][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.149][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.152][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.155][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.156][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.162][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:51.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.180][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:51.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:51.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.199][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:51.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.209][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:51.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:51.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:51.269][self$createEntryFromContent] Accession numbers: 172642450, 172529292, 172529260.
biodb.DEBUG[2025-02-08 16:02:51.288][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:51.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.322][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.322][private$selectFields]
biodb.TRACE[2025-02-08 16:02:51.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:51.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:51.325][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.327][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.328][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.330][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.333][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.336][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:51.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.347][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:51.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.355][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.363][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.364][private$selectFields]
biodb.TRACE[2025-02-08 16:02:51.365][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:51.366][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:51.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.370][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.371][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.374][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.374][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.378][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:51.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:02:51.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.397][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.406][private$selectFields]
biodb.TRACE[2025-02-08 16:02:51.407][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:51.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:51.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.409][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.412][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.412][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.413][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.416][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:51.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.420][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:51.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:02:51.431][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:51.432][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:02:51.439][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.443][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.446][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.449][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.453][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.459][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.463][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:51.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:51.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:51.528][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:51.529][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:02:51.530][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:51.532][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:02:51.534][private$loadEntries] Creating entries from ids [3]: "172623142, 172622621, 172602027".
biodb.DEBUG[2025-02-08 16:02:51.534][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:02:51.536][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172623142, 172622621, 172602027".
biodb.TRACE[2025-02-08 16:02:51.537][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2025-02-08 16:02:51.539][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172623142.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172622621.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172602027.xml".
biodb.DEBUG[2025-02-08 16:02:51.540][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:51.541][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:02:51.542][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:51.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.554][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.555][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.557][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.560][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.561][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.567][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.568][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.574][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.575][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.581][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.587][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.588][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.594][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.595][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.596][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.597][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.601][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.602][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.604][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.608][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.611][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.618][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.621][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.622][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.623][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.628][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.635][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.636][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.641][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.642][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.657][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:51.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.667][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:51.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.676][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:51.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:51.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.695][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:51.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:51.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.702][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:51.721][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.722][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.729][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.732][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.733][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.739][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.739][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.741][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.745][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.746][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.752][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.752][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.758][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.759][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.764][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.765][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.777][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.779][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.780][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.783][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.784][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.796][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.799][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.803][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.804][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.807][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.810][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.813][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.816][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.817][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.820][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:51.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.823][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.824][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.826][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:51.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.830][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:51.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:51.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:51.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:51.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:51.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:51.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:51.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:51.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:51.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:51.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:51.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:51.915][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.922][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.923][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:51.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.929][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.930][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:51.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.936][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.937][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:51.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.943][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.944][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:51.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.950][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.951][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.957][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.958][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:51.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:51.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.964][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.965][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.965][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.966][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.971][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.972][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:51.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:51.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.978][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.979][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.979][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.980][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:51.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.985][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.986][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.989][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:51.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.992][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.993][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:51.999][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.000][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.006][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.007][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:52.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.022][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:52.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.032][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:52.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:52.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.057][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:52.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.066][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:52.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:52.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:52.122][self$createEntryFromContent] Accession numbers: 172623142, 172622621, 172602027.
biodb.DEBUG[2025-02-08 16:02:52.122][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:52.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:52.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:52.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:52.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:52.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:52.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:52.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:52.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.140][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.141][private$selectFields]
biodb.TRACE[2025-02-08 16:02:52.141][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:52.142][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:52.143][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.147][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.150][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.151][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.155][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:52.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.166][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:02:52.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:52.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:52.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:52.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:52.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:52.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:52.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:52.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.183][private$selectFields]
biodb.TRACE[2025-02-08 16:02:52.184][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:52.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:52.185][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.186][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.193][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.196][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.197][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:52.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:02:52.209][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:52.210][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:52.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:52.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:52.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:52.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:52.217][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:52.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.225][private$selectFields]
biodb.TRACE[2025-02-08 16:02:52.226][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:52.227][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:52.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.228][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.229][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.230][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.231][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.235][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.236][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:52.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.239][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:52.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.250][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:02:52.251][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:52.251][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:52.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:52.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:52.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:52.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:52.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:52.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:52.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:52.267][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:52.270][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:52.271][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:52.272][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:52.334][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:52.335][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:52.337][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:52.338][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:52.414][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:52.416][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2025-02-08 16:02:52.419][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2025-02-08 16:02:52.421][private$loadEntries] Creating entries from ids [2]: "172641880, 172634706".
biodb.DEBUG[2025-02-08 16:02:52.422][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:02:52.423][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172641880, 172634706".
biodb.TRACE[2025-02-08 16:02:52.424][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:52.425][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:52.426][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:52.427][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:52.428][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:52.428][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:52.449][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:02:52.451][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.DEBUG[2025-02-08 16:02:52.452][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:52.453][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:52.454][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML".
biodb.TRACE[2025-02-08 16:02:52.562][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172641880,172634706/XML).
biodb.TRACE[2025-02-08 16:02:52.744][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641880.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172634706.xml"
biodb.DEBUG[2025-02-08 16:02:52.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:52.747][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:02:52.747][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:52.749][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:52.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:52.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:52.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:52.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:52.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:52.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:52.758][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.759][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.760][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.764][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.765][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.770][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.771][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.771][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.776][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.777][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.782][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.782][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.787][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.788][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.793][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:52.794][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:52.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.796][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:52.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:52.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.799][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:52.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:52.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.802][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:52.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:52.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.805][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:52.806][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:52.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.811][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.812][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.812][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.817][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:52.818][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:52.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.820][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:52.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:52.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.823][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:52.824][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:52.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.826][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:52.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:52.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.830][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.830][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.833][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:52.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.836][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.836][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.851][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:52.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.861][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:52.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.871][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:52.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.881][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:52.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:52.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:52.915][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:52.916][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:52.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:52.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:52.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:52.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:52.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:52.924][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.925][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.926][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:52.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:52.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.930][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.931][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.932][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.933][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:52.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.937][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.937][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.939][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:52.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.943][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.944][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.945][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.949][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.950][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.956][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.957][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.963][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:52.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:52.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.966][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:52.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.969][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:52.970][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:52.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.971][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:52.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:52.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.983][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:52.984][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:52.985][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:52.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:52.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.989][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.990][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:52.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.996][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:52.997][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:52.997][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:52.998][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:52.999][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:53.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:53.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.002][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:53.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:53.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.008][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.009][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.014][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.015][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.018][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.031][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:53.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.041][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:53.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.050][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:53.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.070][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:53.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:53.113][self$createEntryFromContent] Accession numbers: 172641880, 172634706.
biodb.DEBUG[2025-02-08 16:02:53.113][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:53.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.153][private$selectFields]
biodb.TRACE[2025-02-08 16:02:53.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:53.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:53.155][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.169][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.171][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.172][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.173][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:53.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:53.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.184][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.184][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.190][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.197][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.198][private$selectFields]
biodb.TRACE[2025-02-08 16:02:53.198][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:53.199][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:53.200][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.203][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.207][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.215][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.216][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:02:53.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.233][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.235][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.241][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.241][private$selectFields]
biodb.TRACE[2025-02-08 16:02:53.242][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:53.243][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:53.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.250][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.250][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.252][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.254][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.263][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:02:53.264][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:53.265][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:02:53.272][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:53.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:53.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:53.281][biodb::testThat]
biodb.INFO [2025-02-08 16:02:53.282][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2025-02-08 16:02:53.282][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:53.283][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:53.285][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:53.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:53.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.288][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:53.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:53.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.297][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:53.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:53.329][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:53.331][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:53.332][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2025-02-08 16:02:53.333][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:53.335][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2025-02-08 16:02:53.336][private$loadEntries] Creating entries from ids [1]: "172574413".
biodb.DEBUG[2025-02-08 16:02:53.337][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:02:53.338][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172574413".
biodb.TRACE[2025-02-08 16:02:53.339][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:53.341][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172574413.xml".
biodb.DEBUG[2025-02-08 16:02:53.341][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:53.342][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:02:53.343][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:53.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.354][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.357][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.360][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.360][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.366][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.366][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.372][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.372][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.378][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.378][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.380][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.383][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.384][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.389][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:53.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:53.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.391][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.395][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:53.396][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:53.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.398][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.401][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:53.402][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:53.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:53.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:53.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:53.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:53.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.409][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.410][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:53.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:53.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.413][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:53.414][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:53.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:53.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.419][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:53.419][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.421][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:53.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.425][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.425][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:53.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.431][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.431][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.433][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:53.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.437][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:53.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:53.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.445][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:53.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:53.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:53.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.468][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:53.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:53.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:53.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:53.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:53.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:53.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:53.514][self$createEntryFromContent] Accession numbers: 172574413.
biodb.DEBUG[2025-02-08 16:02:53.515][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:53.516][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.517][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.518][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.531][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.531][private$selectFields]
biodb.TRACE[2025-02-08 16:02:53.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:53.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:53.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.537][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.538][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.540][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.541][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.544][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.544][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.548][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:02:53.555][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.570][private$selectFields]
biodb.TRACE[2025-02-08 16:02:53.570][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:53.571][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:53.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.578][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.579][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.580][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.580][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.582][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:53.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.593][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:02:53.594][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.595][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.601][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:53.603][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.610][private$selectFields]
biodb.TRACE[2025-02-08 16:02:53.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:53.611][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:53.612][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.612][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.616][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.619][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:53.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.622][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:53.632][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172574413].
biodb.DEBUG[2025-02-08 16:02:53.633][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:53.634][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:53.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:53.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:53.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:53.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:53.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:53.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:53.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:53.648][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:53.650][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:53.651][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:53.652][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:53.709][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:53.710][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:53.711][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:53.712][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:53.811][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:53.813][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2025-02-08 16:02:53.816][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2025-02-08 16:02:53.818][private$loadEntries] Creating entries from ids [2]: "172524779, 172415476".
biodb.DEBUG[2025-02-08 16:02:53.819][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:02:53.820][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172524779, 172415476".
biodb.TRACE[2025-02-08 16:02:53.821][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:53.822][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:53.823][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:53.824][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:53.825][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:53.825][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:53.826][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:02:53.828][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.DEBUG[2025-02-08 16:02:53.829][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:53.830][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:53.831][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML".
biodb.TRACE[2025-02-08 16:02:53.935][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172524779,172415476/XML).
biodb.TRACE[2025-02-08 16:02:54.079][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172524779.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172415476.xml"
biodb.DEBUG[2025-02-08 16:02:54.081][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:54.082][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:02:54.083][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:54.084][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.085][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.094][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.110][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.111][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.117][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.117][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.119][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.123][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.124][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.125][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.129][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.136][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.136][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.142][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:54.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.145][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.149][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:54.149][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:54.150][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.151][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.152][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:54.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:54.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:54.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.162][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.168][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:54.169][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:54.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.171][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:54.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:54.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.175][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:54.175][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:54.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.178][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:54.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:54.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.181][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.182][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.184][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.187][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.188][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:54.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.210][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.213][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:54.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.223][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:54.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:54.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:54.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.248][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:54.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.278][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.279][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.285][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.286][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.287][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.293][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.299][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.300][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.306][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.307][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.312][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.313][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.314][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.318][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:54.319][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.325][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:54.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:54.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.328][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:54.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.331][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:54.332][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:54.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.334][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:54.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:54.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:54.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.344][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:54.344][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:54.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.347][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.349][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:54.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:54.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:54.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:54.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.356][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.362][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:54.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.374][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:54.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:54.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:54.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.392][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:54.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:54.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.400][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:54.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.406][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:54.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:54.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:54.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.418][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:54.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:54.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:54.460][self$createEntryFromContent] Accession numbers: 172524779, 172415476.
biodb.DEBUG[2025-02-08 16:02:54.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:54.462][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.463][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.464][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.468][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.477][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.477][private$selectFields]
biodb.TRACE[2025-02-08 16:02:54.478][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:54.479][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:54.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.480][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.487][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.488][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.489][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.491][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:54.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.501][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:54.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.503][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.518][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.518][private$selectFields]
biodb.TRACE[2025-02-08 16:02:54.519][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:54.520][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:54.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.523][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.524][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.524][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.528][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.529][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.530][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.532][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172524779].
biodb.DEBUG[2025-02-08 16:02:54.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.545][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.550][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.558][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.559][private$selectFields]
biodb.TRACE[2025-02-08 16:02:54.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:54.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:54.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.562][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.563][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.564][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.565][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.566][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.568][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.572][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:54.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.581][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172415476].
biodb.DEBUG[2025-02-08 16:02:54.582][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:54.583][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:02:54.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.604][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:54.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:54.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:54.636][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:54.639][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:54.640][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2025-02-08 16:02:54.641][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:54.642][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2025-02-08 16:02:54.644][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:54.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.660][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.661][private$selectFields]
biodb.TRACE[2025-02-08 16:02:54.661][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:54.662][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:54.663][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.670][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.671][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.672][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.674][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.684][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:02:54.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.700][private$selectFields]
biodb.TRACE[2025-02-08 16:02:54.701][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:54.701][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:54.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.703][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.704][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.710][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.713][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.723][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:02:54.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.725][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.730][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.739][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.740][private$selectFields]
biodb.TRACE[2025-02-08 16:02:54.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:54.741][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:54.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.750][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:54.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.753][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:54.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:54.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:54.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:54.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:02:54.764][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:54.764][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:54.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:54.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:54.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:54.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:54.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:54.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:54.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:54.779][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:54.781][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:54.782][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:54.784][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:54.840][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:54.841][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:54.842][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:54.843][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:54.913][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:54.914][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2025-02-08 16:02:54.918][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2025-02-08 16:02:54.920][private$loadEntries] Creating entries from ids [2]: "172583683, 172561660".
biodb.DEBUG[2025-02-08 16:02:54.921][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:02:54.922][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172583683, 172561660".
biodb.TRACE[2025-02-08 16:02:54.923][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:54.924][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:54.925][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:54.926][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:54.927][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:54.927][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:54.928][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:02:54.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.DEBUG[2025-02-08 16:02:54.931][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:54.932][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:54.933][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML".
biodb.TRACE[2025-02-08 16:02:55.050][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172583683,172561660/XML).
biodb.TRACE[2025-02-08 16:02:55.238][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172583683.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172561660.xml"
biodb.DEBUG[2025-02-08 16:02:55.240][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:55.241][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:02:55.241][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:55.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.249][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.250][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.253][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.259][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.260][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.265][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.266][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.272][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.272][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.277][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.278][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.283][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.284][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.298][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:55.299][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.301][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:55.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.305][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:55.305][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:55.306][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:55.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:55.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:55.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:55.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.317][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.318][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.323][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:55.324][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:55.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.326][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:55.327][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:55.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.333][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.333][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.339][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.340][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.342][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.354][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:55.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.363][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:55.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.372][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:55.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.381][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:55.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:55.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.425][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.432][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.432][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.438][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.438][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.444][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.444][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.450][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.451][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.456][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.457][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.462][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:55.463][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:55.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.465][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:55.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:55.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.468][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:55.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:55.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:55.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:55.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.475][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:55.475][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:55.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:55.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.481][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.482][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:55.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.487][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:55.488][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:55.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.490][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:55.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:55.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.493][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:55.494][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.499][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.500][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:55.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.505][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.506][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.511][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:55.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:55.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.520][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:55.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:55.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:55.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.542][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:55.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.551][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:55.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:55.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:55.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:55.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:55.600][self$createEntryFromContent] Accession numbers: 172583683, 172561660.
biodb.DEBUG[2025-02-08 16:02:55.600][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:55.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.602][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.603][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.609][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.617][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.626][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.630][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:55.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.656][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.657][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.658][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.659][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.663][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.664][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.664][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.665][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.667][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.669][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172583683].
biodb.DEBUG[2025-02-08 16:02:55.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.686][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.695][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.696][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.698][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.705][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.706][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.706][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.707][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.709][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172561660].
biodb.DEBUG[2025-02-08 16:02:55.720][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:55.721][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:02:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:55.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:55.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.732][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:55.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:55.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:55.738][biodb::testThat]
biodb.INFO [2025-02-08 16:02:55.739][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2025-02-08 16:02:55.740][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:55.740][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:55.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:55.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.746][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:55.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:55.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:55.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:55.776][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.790][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:55.795][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:55.797][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:55.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:02:55.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:55.800][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:02:55.802][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:55.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.817][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.818][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.820][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.820][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.821][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.823][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.824][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.826][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.827][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.827][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.828][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.829][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.830][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:02:55.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.841][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.847][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.855][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.855][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.856][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.857][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.857][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.858][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.860][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.863][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.864][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.865][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.868][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.878][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:02:55.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.895][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.895][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.896][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.897][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.897][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.898][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.900][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.901][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.904][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.905][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.906][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.907][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.917][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:02:55.918][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:55.918][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:55.920][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.921][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.921][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:55.933][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:55.935][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:55.936][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:02:55.937][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:55.938][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:02:55.940][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:55.941][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.947][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.948][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.955][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.956][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.957][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.957][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.961][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.966][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.967][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.968][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.968][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.969][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.970][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:55.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:55.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:55.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:55.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:55.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:55.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:55.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:55.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:55.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:55.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:55.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.996][private$selectFields]
biodb.TRACE[2025-02-08 16:02:55.997][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:55.998][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:55.998][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:55.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.002][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.003][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.006][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.008][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.009][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.019][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:02:56.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.021][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.041][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.041][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.042][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.043][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.046][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.047][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.049][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.050][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.051][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.053][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.053][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.063][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:02:56.064][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:56.065][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:02:56.082][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.102][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:56.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.109][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.114][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.116][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:56.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:56.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:56.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:02:56.126][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:56.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:02:56.128][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:56.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.136][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.144][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.145][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.145][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.146][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.151][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.152][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.154][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.156][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.157][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.157][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.167][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:02:56.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.184][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.185][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.185][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.186][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.187][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.190][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.191][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.191][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.193][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.194][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.198][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.208][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:02:56.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.214][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.215][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.223][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.224][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.225][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.226][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.226][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.228][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.233][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.233][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.237][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.247][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:02:56.247][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:56.248][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:56.250][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.251][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.251][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.257][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.257][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:56.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:56.266][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:56.267][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:02:56.268][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:56.269][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:02:56.270][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:56.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.272][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.307][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.308][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.310][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.311][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.317][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.318][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.320][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.331][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:56.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.338][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.346][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.346][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.347][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.348][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.348][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.351][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.352][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.353][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.355][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.355][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.357][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.359][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.368][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:02:56.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:56.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.384][private$selectFields]
biodb.TRACE[2025-02-08 16:02:56.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:56.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:56.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.389][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.394][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:56.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.397][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.401][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.407][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:02:56.408][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:56.409][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:02:56.426][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:56.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:56.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:02:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.436][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:56.436][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:56.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.439][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.439][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.441][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:02:56.442][biodb::testThat]
biodb.INFO [2025-02-08 16:02:56.443][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2025-02-08 16:02:56.444][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:02:56.445][biodb::testThat]
biodb.TRACE[2025-02-08 16:02:56.447][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:56.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:56.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:02:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:02:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.459][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.462][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:56.479][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:56.480][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:56.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:56.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:56.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:56.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:56.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:56.491][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:56.494][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:56.495][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:56.496][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:56.563][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:56.564][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:56.565][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:56.567][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:56.653][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:56.655][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2025-02-08 16:02:56.658][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2025-02-08 16:02:56.660][private$loadEntries] Creating entries from ids [3]: "172645658, 75629699, 172639225".
biodb.DEBUG[2025-02-08 16:02:56.661][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:02:56.662][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172645658, 75629699, 172639225".
biodb.TRACE[2025-02-08 16:02:56.663][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:56.664][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:56.665][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:56.666][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:56.667][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:56.667][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:56.668][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:02:56.670][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645658,75629699,172639225/XML".
biodb.DEBUG[2025-02-08 16:02:56.671][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:56.672][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:56.673][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645658,75629699,172639225/XML".
biodb.TRACE[2025-02-08 16:02:56.795][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645658,75629699,172639225/XML).
biodb.TRACE[2025-02-08 16:02:57.020][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645658.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/75629699.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172639225.xml"
biodb.DEBUG[2025-02-08 16:02:57.022][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:57.023][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:02:57.024][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:57.025][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.026][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.031][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:57.035][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.037][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.042][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.042][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.048][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.049][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.050][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.055][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.065][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.073][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.079][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.080][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.086][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:57.086][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:57.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.089][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:57.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:57.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.092][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:57.093][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:57.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:57.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:57.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:57.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:57.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:57.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.104][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.105][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.107][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.110][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:57.111][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:57.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.113][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:57.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:57.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.116][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:57.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:57.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.119][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:57.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:57.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.122][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.123][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.128][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.129][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.130][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.130][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.134][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:57.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.143][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:57.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.152][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.162][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:57.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:57.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:57.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:57.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.190][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:57.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.206][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:57.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.221][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.222][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.228][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.228][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.230][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.234][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.235][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.240][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.240][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.246][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.252][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:57.253][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:57.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.255][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:57.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:57.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.258][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:57.259][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.261][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:57.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:57.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.264][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:57.265][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:57.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:57.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:57.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.270][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.276][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:57.277][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:57.278][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.279][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:57.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:57.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.283][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:57.283][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:57.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.286][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:57.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:57.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.289][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.290][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.295][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.296][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.301][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:57.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.310][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:57.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.326][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:57.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.337][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:57.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:57.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:57.379][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.379][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:57.388][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.395][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.395][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.396][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.397][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.401][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.402][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.408][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.408][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.414][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.415][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.420][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.421][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.426][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:57.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:57.428][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.429][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:57.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:57.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.433][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:57.433][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:57.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:57.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:57.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.439][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:57.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:57.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:57.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.445][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.446][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:57.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.451][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:57.452][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:57.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.454][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:57.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:57.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.457][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:57.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:57.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:57.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:57.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.463][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.464][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.466][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:57.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.470][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.471][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:57.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.476][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:57.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:57.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.485][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:57.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:57.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:57.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:57.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.503][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:57.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:57.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.512][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:57.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:57.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:57.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:57.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:57.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:57.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:57.569][self$createEntryFromContent] Accession numbers: 172645658, 75629699, 172639225.
biodb.DEBUG[2025-02-08 16:02:57.570][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:57.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:57.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.593][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.594][private$selectFields]
biodb.TRACE[2025-02-08 16:02:57.594][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:57.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:57.596][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.601][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.602][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.603][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.607][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.616][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:02:57.617][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.623][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:57.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.632][private$selectFields]
biodb.TRACE[2025-02-08 16:02:57.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:57.633][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:57.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.639][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.641][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.641][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.642][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.644][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.653][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-08 16:02:57.654][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.655][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:57.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.670][private$selectFields]
biodb.TRACE[2025-02-08 16:02:57.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:57.672][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:57.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.676][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.677][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.680][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:57.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.681][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.682][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.684][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:57.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:57.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:57.693][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-08 16:02:57.694][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:57.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:57.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:57.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:57.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:57.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:57.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:57.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:57.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:57.709][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:57.712][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:57.712][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:57.714][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:57.771][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:57.772][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:57.773][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:57.774][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:57.843][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:57.845][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2025-02-08 16:02:57.848][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2025-02-08 16:02:57.849][private$loadEntries] Creating entries from ids [3]: "172645198, 172645159, 172645048".
biodb.DEBUG[2025-02-08 16:02:57.850][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:02:57.851][cch$loadFileContent] Trying to load 3 files from cache: [3]: "172645198, 172645159, 172645048".
biodb.TRACE[2025-02-08 16:02:57.852][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:57.853][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:57.854][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:57.855][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:57.855][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:57.856][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:57.857][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:02:57.858][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML".
biodb.DEBUG[2025-02-08 16:02:57.860][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:57.861][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:57.862][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML".
biodb.TRACE[2025-02-08 16:02:58.121][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645198,172645159,172645048/XML).
biodb.TRACE[2025-02-08 16:02:58.484][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645198.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645159.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645048.xml"
biodb.DEBUG[2025-02-08 16:02:58.487][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:58.488][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:02:58.489][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:58.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:58.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:58.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:58.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:58.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:58.497][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:58.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:58.500][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.500][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.502][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.506][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.506][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.508][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.512][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.513][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.513][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.518][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.519][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.520][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.525][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.525][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.526][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.531][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.532][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.537][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:58.538][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:58.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.539][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.540][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.543][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:58.544][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:58.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.545][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:58.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:58.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.549][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:58.550][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:58.550][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:58.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:58.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.555][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.556][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.557][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.561][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:58.561][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:58.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.564][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:58.564][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:58.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.566][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:58.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.570][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.571][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.586][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.587][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:58.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.603][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:58.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.611][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.620][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:58.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.629][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:58.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:58.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:58.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.647][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:58.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:58.661][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:58.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:58.667][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:58.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:58.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:58.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:58.671][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.671][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.672][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.677][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.678][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.684][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.685][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.690][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.691][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.696][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.697][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.702][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.703][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.708][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:58.709][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:58.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.711][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.712][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:58.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:58.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:58.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:58.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.717][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:58.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:58.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:58.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:58.722][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.723][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:58.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:58.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.727][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.727][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.728][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.729][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.733][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:58.733][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:58.734][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.736][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:58.736][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:58.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.739][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:58.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:58.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.742][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.743][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.748][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.749][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.751][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.754][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:58.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.763][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:58.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.771][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:58.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:58.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.788][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:58.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:58.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:58.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:58.820][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:58.821][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:58.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:58.826][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:58.827][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:58.828][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:58.829][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:58.830][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.831][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.844][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.845][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.851][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.852][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.857][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.858][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.863][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.864][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.869][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.870][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.872][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.876][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:58.876][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:58.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.879][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:02:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:02:58.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.882][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:58.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:58.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.885][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:02:58.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:02:58.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:58.888][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:58.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.891][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:02:58.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:02:58.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.894][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:02:58.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.899][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:02:58.900][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:02:58.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.902][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:58.903][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:58.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:02:58.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:02:58.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.908][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.909][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.910][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.912][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:02:58.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.914][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.915][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.916][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:02:58.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.920][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:02:58.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:58.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.929][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:02:58.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.937][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:02:58.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:02:58.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:02:58.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.948][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:02:58.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:02:58.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:58.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:02:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:02:58.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:58.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:58.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:58.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:58.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:59.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:59.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:59.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:59.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.009][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:59.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:59.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:02:59.012][self$createEntryFromContent] Accession numbers: 172645198, 172645159, 172645048.
biodb.DEBUG[2025-02-08 16:02:59.013][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:59.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.028][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.029][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.029][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.030][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.031][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.032][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.032][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.038][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.040][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.042][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.051][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:02:59.052][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.053][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.059][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.068][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.068][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.069][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.070][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.070][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.071][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.074][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.074][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.078][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.078][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.079][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.080][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.086][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:02:59.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.115][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.118][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.121][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.125][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.128][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:02:59.138][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:59.139][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:59.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.158][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:59.169][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:59.171][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:59.172][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:02:59.174][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:59.175][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:02:59.176][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:59.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.193][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.194][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.194][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.195][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.199][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.200][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.201][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.202][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.203][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.206][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:02:59.217][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.218][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.223][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.225][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.232][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.233][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.233][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.234][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.235][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.236][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.242][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.244][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.246][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.256][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:02:59.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.273][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.273][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.274][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.279][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.280][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.282][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.282][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.286][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.296][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:02:59.297][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:59.298][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:59.299][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.300][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.301][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.305][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.307][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:59.313][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:59.315][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:02:59.316][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:02:59.317][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:02:59.318][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:02:59.320][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:02:59.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.336][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.337][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.339][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.346][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.347][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.357][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:02:59.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.385][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.386][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.387][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.387][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.388][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.389][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.390][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.396][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.396][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.397][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.400][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.410][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:02:59.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.426][private$selectFields]
biodb.TRACE[2025-02-08 16:02:59.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:02:59.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:02:59.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.432][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.436][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:02:59.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.440][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:02:59.440][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:02:59.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.450][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:02:59.451][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:02:59.451][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:02:59.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:02:59.482][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:02:59.484][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:59.485][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:59.486][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:02:59.543][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:02:59.544][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:02:59.545][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:02:59.546][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:02:59.617][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:02:59.619][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2025-02-08 16:02:59.623][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2025-02-08 16:02:59.624][private$loadEntries] Creating entries from ids [3]: "130004307, 172638764, 172638763".
biodb.DEBUG[2025-02-08 16:02:59.625][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2025-02-08 16:02:59.626][cch$loadFileContent] Trying to load 3 files from cache: [3]: "130004307, 172638764, 172638763".
biodb.TRACE[2025-02-08 16:02:59.627][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2025-02-08 16:02:59.628][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:02:59.629][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:02:59.630][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:02:59.631][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:02:59.631][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:02:59.632][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2025-02-08 16:02:59.633][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML".
biodb.DEBUG[2025-02-08 16:02:59.635][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:02:59.636][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:02:59.637][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML".
biodb.TRACE[2025-02-08 16:02:59.762][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/130004307,172638764,172638763/XML).
biodb.TRACE[2025-02-08 16:02:59.962][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/130004307.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638764.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172638763.xml"
biodb.DEBUG[2025-02-08 16:02:59.965][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:02:59.966][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2025-02-08 16:02:59.967][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:02:59.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:02:59.969][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:02:59.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:02:59.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:02:59.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:02:59.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:02:59.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:02:59.979][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:59.980][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:59.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:02:59.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:02:59.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:59.986][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:59.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:59.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:02:59.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.992][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:59.993][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:59.994][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.995][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:02:59.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:02:59.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:02:59.999][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:02:59.999][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.005][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.006][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.012][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.013][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.018][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:00.019][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:00.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.022][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:00.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:00.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.025][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:00.026][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:00.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:00.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:00.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.032][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:00.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:00.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:00.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:00.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.039][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.040][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.040][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.046][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:00.047][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:00.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.049][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:00.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:00.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.052][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:00.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:00.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:00.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:00.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.060][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.060][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.061][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.062][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.063][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.066][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.067][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.073][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:00.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.095][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:00.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:00.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.114][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:00.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:00.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:00.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:00.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:00.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:00.160][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:00.161][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:00.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:00.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:00.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:00.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:00.170][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.171][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.172][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.177][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.177][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.183][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.184][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.189][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.190][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.191][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.197][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.197][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.203][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.204][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.205][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.210][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:00.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:00.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.213][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:00.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:00.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.217][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:00.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:00.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.219][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:00.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:00.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.223][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:00.224][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:00.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:00.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:00.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.237][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:00.237][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:00.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.240][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:00.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:00.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.243][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:00.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:00.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:00.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:00.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.250][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.251][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.254][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.257][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.258][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.264][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:00.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.274][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:00.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.284][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:00.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.293][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:00.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.303][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:00.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:00.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:00.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:00.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:00.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:00.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:00.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:00.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:00.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:00.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:00.350][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.351][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.352][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.357][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.364][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.372][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.373][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.379][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.380][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.380][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.386][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.386][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.392][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.393][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.394][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.399][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:00.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:00.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.403][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:00.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:00.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.406][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:00.407][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:00.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.409][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:00.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:00.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.412][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:00.413][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:00.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.414][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:00.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:00.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.418][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.419][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:00.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.425][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:00.425][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:00.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.428][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:00.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:00.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.431][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:00.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:00.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.433][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.434][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:00.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:00.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.437][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.438][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.440][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.441][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:00.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.444][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.444][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.446][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:00.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.450][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:00.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:00.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:00.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:00.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.468][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:00.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:00.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.477][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:00.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:00.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.486][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:00.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:00.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:00.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:00.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:00.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:00.546][self$createEntryFromContent] Accession numbers: 130004307, 172638764, 172638763.
biodb.DEBUG[2025-02-08 16:03:00.547][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:00.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:00.549][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:00.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:00.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:00.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:00.556][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:00.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:00.558][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.564][private$selectFields]
biodb.TRACE[2025-02-08 16:03:00.565][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:00.566][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:00.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.569][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.572][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.573][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.574][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.575][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.576][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.578][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:00.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.588][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:03:00.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:00.589][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:00.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:00.595][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:00.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:00.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:00.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:00.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.605][private$selectFields]
biodb.TRACE[2025-02-08 16:03:00.605][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:00.606][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:00.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.615][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.616][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.617][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.619][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:00.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:03:00.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:00.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:00.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:00.644][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:00.645][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:00.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:00.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:00.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.654][private$selectFields]
biodb.TRACE[2025-02-08 16:03:00.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:00.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:00.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.661][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.664][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.665][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:00.666][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.668][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:00.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:00.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:00.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:00.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:03:00.680][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:00.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:00.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:00.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:00.684][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:00.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:00.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:00.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:00.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:00.696][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:00.698][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:00.699][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:00.700][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2025-02-08 16:03:00.758][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:03:00.759][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:03:00.760][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:03:00.761][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:03:00.834][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:03:00.836][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2025-02-08 16:03:00.839][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2025-02-08 16:03:00.840][private$loadEntries] Creating entries from ids [1]: "172643109".
biodb.DEBUG[2025-02-08 16:03:00.841][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:03:00.842][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172643109".
biodb.TRACE[2025-02-08 16:03:00.843][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:03:00.844][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:03:00.845][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:03:00.846][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:00.846][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:03:00.847][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:03:00.848][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-08 16:03:00.849][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML".
biodb.DEBUG[2025-02-08 16:03:00.851][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:00.852][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:00.853][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML".
biodb.TRACE[2025-02-08 16:03:00.937][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643109/XML).
biodb.TRACE[2025-02-08 16:03:01.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172643109.xml"
biodb.DEBUG[2025-02-08 16:03:01.054][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:03:01.055][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:03:01.056][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:03:01.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.067][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.068][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.073][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.074][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.074][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.075][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.079][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.080][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.086][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.087][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.092][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.093][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.099][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.100][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.101][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.101][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.106][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:01.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:01.107][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.108][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.109][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:01.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:01.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.112][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:01.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:01.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:01.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:01.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.119][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:01.120][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:01.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.122][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:01.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:01.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.126][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:01.127][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:01.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.128][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.129][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:01.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:01.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.133][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:01.134][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:01.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.136][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:01.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:01.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.139][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:01.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:01.141][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.142][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:01.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:01.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.146][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:01.147][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:01.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.150][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:01.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:01.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.153][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:01.154][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:01.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:01.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:01.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.160][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:01.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:01.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.170][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:01.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:01.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.179][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:01.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:01.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.189][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:01.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:01.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.198][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:01.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:01.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:01.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:01.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:01.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:01.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:01.254][self$createEntryFromContent] Accession numbers: 172643109.
biodb.DEBUG[2025-02-08 16:03:01.255][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:01.256][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.262][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.271][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.272][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.272][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.273][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.274][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.278][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.279][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.281][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.282][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.282][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.285][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.292][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.295][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-08 16:03:01.296][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.297][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.311][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.312][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.313][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.317][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.317][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.319][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.320][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.320][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.321][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.322][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.324][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:01.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.351][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.351][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.352][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.353][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.355][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.357][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.358][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.360][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.361][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.362][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.362][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.364][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:03:01.376][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:01.376][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:01.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.396][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.401][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.403][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:01.409][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:01.411][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:01.412][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2025-02-08 16:03:01.413][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:01.414][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2025-02-08 16:03:01.416][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:01.417][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.423][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.424][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.425][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.432][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.433][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.434][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.434][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.435][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.436][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.437][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.439][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.440][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.443][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.443][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.444][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.445][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.446][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.456][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:03:01.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.463][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.472][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.474][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.475][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.476][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.478][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.481][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.482][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.486][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [75629699].
biodb.DEBUG[2025-02-08 16:03:01.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.521][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.530][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.534][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172639225].
biodb.DEBUG[2025-02-08 16:03:01.545][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:01.546][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:01.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:01.559][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:01.562][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:01.562][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2025-02-08 16:03:01.563][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:01.564][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2025-02-08 16:03:01.566][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:01.567][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.568][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.573][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.575][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.583][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.584][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.585][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.585][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.591][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.595][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.595][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.596][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.599][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.608][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:03:01.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.624][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.625][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.626][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.627][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.632][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.633][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.634][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.635][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.636][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.638][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.643][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:03:01.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.651][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.656][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.667][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.668][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.668][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.669][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.673][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.673][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.676][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.677][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.678][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.680][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:03:01.691][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:01.692][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:01.710][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.711][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.716][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.717][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:01.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:01.726][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:01.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:03:01.728][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:01.729][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:03:01.731][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:01.732][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.733][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.738][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.748][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.748][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.749][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.750][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.751][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.751][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.752][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.754][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.757][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.758][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.762][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.772][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172631573].
biodb.DEBUG[2025-02-08 16:03:01.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.787][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.798][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.799][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.799][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.803][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.803][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.805][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.806][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.807][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.807][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.808][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.809][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.810][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.812][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172608227].
biodb.DEBUG[2025-02-08 16:03:01.822][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.823][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.828][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.837][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.838][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.839][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.840][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.840][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.848][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.849][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.852][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.853][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.862][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172593299].
biodb.DEBUG[2025-02-08 16:03:01.863][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:01.864][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:01.866][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:01.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:01.881][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:01.882][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:03:01.883][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:01.884][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:03:01.885][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:01.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.901][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.902][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.904][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.908][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.909][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.911][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.914][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.915][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.925][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:01.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.942][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.942][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.944][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.948][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.948][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.949][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.950][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.951][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.952][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.956][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.957][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.967][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529292].
biodb.DEBUG[2025-02-08 16:03:01.967][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:01.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:01.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:01.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:01.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:01.975][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:01.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:01.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.983][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.984][private$selectFields]
biodb.TRACE[2025-02-08 16:03:01.985][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:01.985][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:01.986][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.990][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.991][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.992][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.994][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:01.994][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.995][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:01.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:01.997][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:01.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:01.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.007][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172529260].
biodb.DEBUG[2025-02-08 16:03:02.008][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:02.009][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:02.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.033][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.035][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:02.047][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:02.050][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:02.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2025-02-08 16:03:02.053][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:02.054][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2025-02-08 16:03:02.055][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:02.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.063][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.072][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.073][private$selectFields]
biodb.TRACE[2025-02-08 16:03:02.074][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:02.075][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:02.075][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.077][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.083][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.087][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:02.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:03:02.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.098][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.099][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.103][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.112][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.113][private$selectFields]
biodb.TRACE[2025-02-08 16:03:02.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:02.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:02.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.122][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.123][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.127][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:02.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:03:02.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.154][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.154][private$selectFields]
biodb.TRACE[2025-02-08 16:03:02.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:02.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:02.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.164][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.166][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.168][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:02.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:03:02.179][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:02.180][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:02.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.182][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.187][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.188][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:02.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:02.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:02.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2025-02-08 16:03:02.199][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:02.201][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2025-02-08 16:03:02.202][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:02.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.219][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.220][private$selectFields]
biodb.TRACE[2025-02-08 16:03:02.220][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:02.221][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:02.222][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.223][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.225][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.226][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.228][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.230][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.234][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:02.234][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.244][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643109].
biodb.DEBUG[2025-02-08 16:03:02.245][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.246][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.252][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.261][private$selectFields]
biodb.TRACE[2025-02-08 16:03:02.262][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:02.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:02.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.271][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.274][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:02.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.284][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:02.285][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.292][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.297][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.300][private$selectFields]
biodb.TRACE[2025-02-08 16:03:02.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:02.301][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:02.302][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.307][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.316][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.317][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:02.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.322][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:02.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.329][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:02.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.333][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:03:02.333][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:02.334][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:03:02.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.357][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.366][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:02.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:02.389][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:02.392][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:02.393][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:02.394][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:03:02.450][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:03:02.451][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:03:02.452][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:03:02.454][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:03:02.525][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:03:02.527][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2025-02-08 16:03:02.530][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2025-02-08 16:03:02.532][private$loadEntries] Creating entries from ids [2]: "172645518, 172641159".
biodb.DEBUG[2025-02-08 16:03:02.533][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2025-02-08 16:03:02.534][cch$loadFileContent] Trying to load 2 files from cache: [2]: "172645518, 172641159".
biodb.TRACE[2025-02-08 16:03:02.535][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2025-02-08 16:03:02.536][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:03:02.537][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:03:02.537][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:02.538][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:03:02.539][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:03:02.540][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2025-02-08 16:03:02.541][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645518,172641159/XML".
biodb.DEBUG[2025-02-08 16:03:02.543][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:02.544][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:02.545][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645518,172641159/XML".
biodb.TRACE[2025-02-08 16:03:02.668][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172645518,172641159/XML).
biodb.TRACE[2025-02-08 16:03:02.860][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172645518.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172641159.xml"
biodb.DEBUG[2025-02-08 16:03:02.862][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:03:02.863][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2025-02-08 16:03:02.864][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:03:02.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:02.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:02.866][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:02.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:02.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:02.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:02.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:02.875][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:02.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:02.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:02.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:02.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.882][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.882][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.884][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.888][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:02.888][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:02.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:02.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:02.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.894][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.895][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.900][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.901][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.906][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.907][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.912][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:02.913][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.916][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.919][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:02.919][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:02.920][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.921][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:02.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:02.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:02.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:02.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.928][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:02.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:02.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.931][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:02.932][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:02.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.934][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:02.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:02.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.938][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:02.939][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:02.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.941][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:02.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:02.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.947][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:02.948][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:02.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:02.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:02.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.953][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:02.954][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:02.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.956][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:02.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:02.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.960][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:02.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:02.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.968][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:02.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:02.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.978][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:02.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:02.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.986][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:02.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:02.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.995][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:02.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:02.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:02.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:02.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:02.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.002][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:03.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:03.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:03.042][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:03.042][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:03.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:03.048][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:03.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:03.049][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:03.050][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:03.052][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.059][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.059][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.065][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.066][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.067][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.068][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.072][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.072][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.073][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.078][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.079][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.079][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.080][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.084][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.085][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.086][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.091][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:03.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:03.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.093][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.094][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:03.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:03.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.097][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:03.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:03.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.099][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.100][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:03.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:03.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:03.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:03.105][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.105][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.106][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:03.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:03.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.109][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:03.110][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:03.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.113][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:03.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:03.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.116][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:03.116][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:03.117][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.119][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:03.119][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:03.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:03.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:03.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.125][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:03.125][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:03.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:03.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:03.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.131][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:03.132][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:03.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.134][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:03.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:03.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:03.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:03.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.147][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:03.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:03.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.156][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:03.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:03.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.166][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:03.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.169][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:03.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.174][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:03.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:03.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:03.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:03.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.201][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:03.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:03.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:03.225][self$createEntryFromContent] Accession numbers: 172645518, 172641159.
biodb.DEBUG[2025-02-08 16:03:03.226][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:03.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:03.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:03.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:03.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:03.234][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:03.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:03.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:03.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.239][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.242][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.243][private$selectFields]
biodb.TRACE[2025-02-08 16:03:03.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:03.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:03.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.252][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.253][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.256][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.266][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:03:03.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:03.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:03.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:03.273][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:03.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:03.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:03.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:03.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.291][private$selectFields]
biodb.TRACE[2025-02-08 16:03:03.291][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:03.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:03.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.299][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.300][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.302][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.304][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:03.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.314][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645518].
biodb.DEBUG[2025-02-08 16:03:03.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:03.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:03.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:03.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:03.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:03.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:03.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:03.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.326][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.329][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.330][private$selectFields]
biodb.TRACE[2025-02-08 16:03:03.331][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:03.331][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:03.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.336][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.336][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.338][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.339][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:03.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.343][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:03.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:03.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:03.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:03.352][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641159].
biodb.DEBUG[2025-02-08 16:03:03.353][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:03.354][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:03.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:03.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:03.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:03.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:03.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:03.362][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:03.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:03.368][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:03.371][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:03.371][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:03.373][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:03:03.429][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:03:03.430][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:03:03.431][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:03:03.432][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:03:03.634][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:03:03.636][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2025-02-08 16:03:03.639][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2025-02-08 16:03:03.641][private$loadEntries] Creating entries from ids [1]: "172643930".
biodb.DEBUG[2025-02-08 16:03:03.642][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:03:03.643][cch$loadFileContent] Trying to load 1 files from cache: [1]: "172643930".
biodb.TRACE[2025-02-08 16:03:03.644][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-08 16:03:03.645][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-08 16:03:03.646][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:03:03.646][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:03.647][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2025-02-08 16:03:03.648][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2025-02-08 16:03:03.649][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-08 16:03:03.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML".
biodb.DEBUG[2025-02-08 16:03:03.652][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:03.652][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:03.653][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML".
biodb.TRACE[2025-02-08 16:03:03.838][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/172643930/XML).
biodb.TRACE[2025-02-08 16:03:03.990][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/172643930.xml"
biodb.DEBUG[2025-02-08 16:03:03.992][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2025-02-08 16:03:03.993][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:03:03.994][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2025-02-08 16:03:03.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:03.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:03.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.001][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.005][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.005][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.006][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.007][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.011][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.012][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.017][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.018][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.019][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.024][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.024][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.025][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.026][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.037][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.038][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.043][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:04.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:04.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.047][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2025-02-08 16:03:04.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:04.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.050][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:04.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:04.052][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.053][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:04.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:04.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:04.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:04.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.059][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:04.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:04.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:04.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:04.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.070][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:04.070][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:04.071][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.073][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:04.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:04.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.076][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:04.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:04.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.078][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2025-02-08 16:03:04.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:04.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.083][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:04.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:04.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:04.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:04.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.089][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:04.090][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:04.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:04.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.095][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2025-02-08 16:03:04.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:04.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.105][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2025-02-08 16:03:04.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:04.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.113][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2025-02-08 16:03:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:04.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.122][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2025-02-08 16:03:04.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.143][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2025-02-08 16:03:04.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:04.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:04.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:04.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:04.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:04.187][self$createEntryFromContent] Accession numbers: 172643930.
biodb.DEBUG[2025-02-08 16:03:04.188][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:04.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.204][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.214][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.218][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643930].
biodb.DEBUG[2025-02-08 16:03:04.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.236][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.244][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.244][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.251][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.254][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.255][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.259][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.263][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.269][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:04.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.276][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.285][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.286][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.286][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.287][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.295][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.296][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.297][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.300][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.310][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:03:04.311][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:04.311][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:04.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:04.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:04.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:04.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:03:04.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:04.347][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:03:04.348][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:04.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.365][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.365][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.371][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.374][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.375][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.375][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.376][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.379][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.389][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:03:04.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.414][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.415][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.417][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.419][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.420][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.422][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.423][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.424][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.428][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:03:04.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.455][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.456][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.457][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.465][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.468][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:03:04.479][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:04.480][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:04.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.489][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:04.495][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:04.498][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:04.499][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:03:04.500][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:04.501][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:03:04.502][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:04.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.520][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.521][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.522][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.529][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.530][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.532][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.533][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.534][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:04.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.561][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.562][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.563][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.564][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.567][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.568][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.569][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.570][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.571][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.572][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.575][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.575][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:03:04.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.588][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.603][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.603][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.606][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.609][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.613][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.614][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.617][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.628][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:03:04.629][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:04.630][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:04.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.649][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.650][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.655][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:04.662][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:04.664][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:04.665][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:04.667][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:03:04.724][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:03:04.725][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:03:04.726][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:03:04.727][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:03:04.802][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:03:04.804][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2025-02-08 16:03:04.808][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2025-02-08 16:03:04.811][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:04.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.828][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.829][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.829][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.838][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.838][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.842][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:03:04.853][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.854][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.855][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.861][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.869][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.870][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.870][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.871][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.872][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.873][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.873][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.875][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.876][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.878][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.878][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.880][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.880][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.883][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.883][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.884][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.894][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:03:04.894][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.895][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.896][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.900][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:04.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.910][private$selectFields]
biodb.TRACE[2025-02-08 16:03:04.910][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:04.911][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:04.912][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.917][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.918][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.919][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.919][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:04.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.923][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:04.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:04.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:04.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:04.933][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:03:04.934][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:04.935][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:04.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:04.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:04.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:04.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:04.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:04.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:04.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:04.950][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:04.953][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2025-02-08 16:03:04.953][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2025-02-08 16:03:04.955][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2025-02-08 16:03:05.011][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2025-02-08 16:03:05.012][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2025-02-08 16:03:05.013][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2025-02-08 16:03:05.015][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2025-02-08 16:03:05.091][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2025-02-08 16:03:05.093][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2025-02-08 16:03:05.096][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2025-02-08 16:03:05.098][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:05.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.114][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.115][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.115][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.116][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.119][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.120][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.120][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.121][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.123][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.123][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.124][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.125][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.125][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.126][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.127][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.128][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:03:05.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.153][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.154][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.154][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.155][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.162][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.163][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.164][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.165][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.167][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.177][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:03:05.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.178][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.193][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.218][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.219][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.221][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.227][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.233][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:03:05.244][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:05.244][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:05.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.263][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:05.275][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:05.277][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:05.278][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2025-02-08 16:03:05.279][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:05.280][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2025-02-08 16:03:05.282][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:05.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.298][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.298][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.299][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.300][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.302][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.307][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.308][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.308][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.309][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.310][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.311][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645658].
biodb.DEBUG[2025-02-08 16:03:05.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.331][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.338][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.340][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.343][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.344][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.346][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.347][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.347][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.348][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.349][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.351][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.352][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.361][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645518].
biodb.DEBUG[2025-02-08 16:03:05.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.378][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.382][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.383][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.387][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.390][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.391][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641159].
biodb.DEBUG[2025-02-08 16:03:05.402][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:05.402][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:05.404][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.405][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.405][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.410][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.411][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:05.418][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:05.420][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:05.422][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2025-02-08 16:03:05.423][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:05.424][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2025-02-08 16:03:05.425][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:05.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.428][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.442][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.443][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.444][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.445][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.446][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.447][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.450][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.451][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.453][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.457][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.469][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172643930].
biodb.DEBUG[2025-02-08 16:03:05.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.477][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.478][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.492][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.493][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.494][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.495][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.496][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.498][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.500][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.501][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.503][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.504][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.507][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.508][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.519][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:05.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.535][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.536][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.537][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.537][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.538][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.539][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.541][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.544][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.545][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.545][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.546][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.547][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.548][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.549][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.559][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:03:05.560][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:05.561][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:05.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:05.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:05.595][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:05.596][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:03:05.597][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:05.598][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:03:05.600][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:05.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.616][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.625][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.627][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.629][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.630][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.641][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172623142].
biodb.DEBUG[2025-02-08 16:03:05.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.647][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.649][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.653][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.657][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.659][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.666][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.667][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.669][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.670][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172622621].
biodb.DEBUG[2025-02-08 16:03:05.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.688][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.697][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.697][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.698][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.699][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.705][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.706][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.710][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.717][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.720][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172602027].
biodb.DEBUG[2025-02-08 16:03:05.721][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:05.721][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:05.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:05.736][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:05.738][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:05.739][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:03:05.740][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:05.741][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:03:05.743][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:05.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.766][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.767][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.768][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.769][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.770][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.776][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.777][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.781][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.792][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172642450].
biodb.DEBUG[2025-02-08 16:03:05.793][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.808][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.809][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.810][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.811][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.812][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.815][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.816][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.818][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.819][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.822][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.823][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.833][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172641880].
biodb.DEBUG[2025-02-08 16:03:05.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.834][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.835][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.839][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.842][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.845][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.848][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.849][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.850][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.851][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.857][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.858][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.859][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.863][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.873][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172634706].
biodb.DEBUG[2025-02-08 16:03:05.874][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:05.874][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:05.893][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.899][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:05.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:05.908][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:05.909][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2025-02-08 16:03:05.910][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:05.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2025-02-08 16:03:05.913][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:05.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.930][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.930][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.931][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.932][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.932][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.933][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.935][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.936][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.938][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.939][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.940][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.940][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.942][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.946][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.952][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [130004307].
biodb.DEBUG[2025-02-08 16:03:05.953][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.954][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.959][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.960][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:05.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:05.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.968][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.968][private$selectFields]
biodb.TRACE[2025-02-08 16:03:05.969][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:05.970][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:05.970][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.974][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.976][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.978][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:05.979][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.981][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:05.982][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.985][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:05.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:05.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:05.991][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638764].
biodb.DEBUG[2025-02-08 16:03:05.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:05.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:05.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:05.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:05.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:05.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.007][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.007][private$selectFields]
biodb.TRACE[2025-02-08 16:03:06.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:06.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:06.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.010][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.011][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.013][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.014][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.015][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.015][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.017][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.020][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:06.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.038][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172638763].
biodb.DEBUG[2025-02-08 16:03:06.039][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:06.039][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:06.041][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.041][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.048][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:06.054][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:06.056][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:06.057][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2025-02-08 16:03:06.058][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:06.059][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2025-02-08 16:03:06.060][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:06.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.068][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:06.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.076][private$selectFields]
biodb.TRACE[2025-02-08 16:03:06.077][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:06.078][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:06.079][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.079][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.080][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.082][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.083][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.084][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.085][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.086][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.087][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.089][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:06.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645198].
biodb.DEBUG[2025-02-08 16:03:06.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.101][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.105][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:06.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.115][private$selectFields]
biodb.TRACE[2025-02-08 16:03:06.116][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:06.117][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:06.118][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.120][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.122][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.122][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.124][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.125][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.127][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.128][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.129][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:06.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645159].
biodb.DEBUG[2025-02-08 16:03:06.140][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:06.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.154][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.155][private$selectFields]
biodb.TRACE[2025-02-08 16:03:06.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:06.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:06.157][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.160][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.161][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.162][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.163][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.164][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.164][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2025-02-08 16:03:06.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.168][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2025-02-08 16:03:06.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [172645048].
biodb.DEBUG[2025-02-08 16:03:06.179][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:06.180][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:03:06.196][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:06.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:06.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.199][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:06.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:06.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:03:06.206][biodb::testThat]
biodb.INFO [2025-02-08 16:03:06.206][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2025-02-08 16:03:06.207][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:06.208][biodb::testThat]
biodb.TRACE[2025-02-08 16:03:06.210][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:03:06.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:03:06.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.213][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-08 16:03:06.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-08 16:03:06.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.217][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.220][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.223][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.226][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.238][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:06.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.249][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:06.257][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:06.259][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:06.260][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:03:06.261][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:06.262][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:03:06.264][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:06.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:06.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.313][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.319][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.322][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.339][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.342][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.360][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.367][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.373][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.382][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.383][private$selectFields]
biodb.TRACE[2025-02-08 16:03:06.384][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:06.385][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:06.385][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.386][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.389][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.390][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.392][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.393][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.395][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.396][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.398][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.399][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.402][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.402][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.405][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.406][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.408][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.408][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.411][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.411][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.413][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.414][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.417][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.417][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.419][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.420][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.423][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.423][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.428][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.429][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.431][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.431][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.432][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.433][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.434][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.434][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.435][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.437][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.438][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.439][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.440][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.441][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.443][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.444][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.446][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.447][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.448][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.449][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.450][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.451][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.452][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.453][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.454][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.455][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.456][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.457][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.458][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.459][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.459][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.461][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.462][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.462][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.463][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.464][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.464][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.466][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.467][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.468][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.469][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.470][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.471][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.472][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.474][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.475][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.476][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.477][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.478][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.479][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.480][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.481][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.482][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.485][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.486][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.488][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.489][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.489][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.491][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.491][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.492][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.495][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.497][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.498][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.500][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.501][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.502][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.503][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.504][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.505][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.508][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.510][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.511][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.513][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.514][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.516][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.519][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.520][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.521][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.525][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.526][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.527][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.528][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.529][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.530][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.531][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:06.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.567][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.595][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.598][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.601][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.610][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.616][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.622][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.628][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.634][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.674][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-08 16:03:06.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:06.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:06.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:06.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:06.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:06.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:06.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:06.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.752][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.758][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.761][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.764][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.767][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.773][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.779][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.788][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.791][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.798][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.801][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.808][private$selectFields]
biodb.TRACE[2025-02-08 16:03:06.809][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:06.810][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:06.811][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.812][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.813][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.815][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.816][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.818][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.819][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.821][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.822][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.824][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.825][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.826][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.827][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.827][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.828][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.829][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.830][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.830][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.831][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.832][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.833][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.833][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.835][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.836][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.837][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.837][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.838][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.839][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.840][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.841][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.843][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.844][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.845][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.846][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.847][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.849][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.855][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.855][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.857][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.858][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.858][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.860][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.861][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.861][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.863][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.863][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.864][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.865][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.866][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.867][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.868][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.869][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.870][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.871][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.872][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.873][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.875][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.876][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.877][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.878][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.879][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.881][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.883][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.883][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.884][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.885][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.886][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.887][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.888][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.890][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.891][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.892][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.894][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.895][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.896][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.897][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.899][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.899][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.900][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.903][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.904][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.905][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.906][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.907][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.909][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.910][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:06.911][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.912][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.914][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.915][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.917][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.918][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.920][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.921][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.923][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.924][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.926][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.927][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:06.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.928][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.929][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:06.930][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:06.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.932][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.932][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:06.933][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:06.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:06.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.938][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:06.939][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:06.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.941][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.942][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:06.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.945][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:06.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.947][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:06.948][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:06.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:06.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.953][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.954][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:06.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.956][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.957][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:06.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.959][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:06.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:06.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:06.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:06.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.981][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:06.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.992][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:06.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:06.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:06.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:06.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.010][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.016][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.019][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.022][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.028][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.031][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.034][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.041][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.044][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.047][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.082][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.085][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.121][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-08 16:03:07.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:07.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:07.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:07.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:07.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:07.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:07.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.186][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.189][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.213][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.216][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.219][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.222][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.228][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.229][private$selectFields]
biodb.TRACE[2025-02-08 16:03:07.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:07.230][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:07.231][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.232][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.235][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.236][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.238][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.239][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.241][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.242][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.242][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.243][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.244][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.245][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.247][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.248][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.250][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.251][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.256][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.257][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.259][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.260][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.262][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.263][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.268][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.270][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.271][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.273][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.274][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.275][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.278][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.278][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.281][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.281][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.284][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.284][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.286][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.287][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.287][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.289][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.290][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.291][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.292][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.293][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.294][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.294][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.295][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.296][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.297][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.297][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.298][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.299][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.300][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.302][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.304][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.308][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.315][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.318][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.319][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.322][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.322][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.325][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.325][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.328][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.331][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.332][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.334][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.335][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.337][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.338][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.339][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.340][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.342][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.343][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.345][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.346][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.348][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.349][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.351][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.352][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.355][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.355][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.356][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.357][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.358][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.358][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.359][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.360][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.361][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.364][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.364][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.366][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.366][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.367][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.368][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.369][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.370][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.371][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.372][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.373][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.374][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.374][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.375][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.376][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.377][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.381][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.382][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.383][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.385][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.386][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.387][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.388][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:07.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.421][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.447][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.459][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.462][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.475][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.478][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.481][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.484][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.487][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.496][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.546][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-02-08 16:03:07.546][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:07.547][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:07.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:07.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:07.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:07.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:07.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:07.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:07.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:07.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:07.573][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:07.574][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:03:07.575][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:07.577][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:03:07.578][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:07.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:07.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:07.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:07.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:07.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:07.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:07.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:07.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.627][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.639][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.646][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.649][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.655][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.658][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.689][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.690][private$selectFields]
biodb.TRACE[2025-02-08 16:03:07.690][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:07.691][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:07.692][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.693][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.693][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.696][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.696][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.699][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.699][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.702][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.702][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.705][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.706][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.706][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.708][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.708][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.710][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.711][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.713][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.714][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.716][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.717][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.719][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.720][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.722][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.723][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.726][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.728][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.732][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.732][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.735][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.736][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.738][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.739][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.740][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.741][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.747][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.748][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.750][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.753][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.754][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.756][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.757][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.759][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.762][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.763][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.768][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.769][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.771][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.777][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.778][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.781][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.784][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.785][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.787][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.788][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.790][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.791][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:07.791][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.792][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.797][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.797][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.798][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.800][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.801][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.803][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.803][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.804][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.806][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.806][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.807][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.808][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.809][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.809][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.810][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.812][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.813][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.814][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.815][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.815][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.816][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.817][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.818][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.819][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.819][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.820][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.821][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.822][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.822][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.831][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.832][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.835][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.839][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.842][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.843][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.845][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.846][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.847][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.848][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:07.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.856][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:07.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:07.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:07.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:07.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:07.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:07.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:07.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.907][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.910][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:07.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:07.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.917][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.923][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:07.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:07.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.926][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:07.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.936][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.939][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.942][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:07.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:07.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.949][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:07.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:07.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.965][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:07.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:07.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:07.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:07.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:07.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:07.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:07.999][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:03:08.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:08.010][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:08.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:08.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:08.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:08.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:08.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:08.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.055][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.071][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.074][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.077][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.093][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.097][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.100][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.104][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.126][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.127][private$selectFields]
biodb.TRACE[2025-02-08 16:03:08.127][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:08.128][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:08.129][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.130][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.131][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.133][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.134][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.136][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.136][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.137][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.138][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.139][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.142][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.144][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.145][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.148][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.148][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.149][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.150][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.151][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.154][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.154][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.156][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.157][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.158][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.159][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.160][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.163][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.163][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.165][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.168][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.169][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.171][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.172][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.174][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.175][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.176][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.177][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.178][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.180][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.181][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.181][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.182][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.183][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.184][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.184][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.185][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.186][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.187][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.189][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.190][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.192][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.193][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.195][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.196][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.198][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.200][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.201][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.202][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.203][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.204][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.204][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.205][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.206][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.207][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.207][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.208][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.210][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.211][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.213][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.214][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.215][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.216][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.218][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.219][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.220][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.221][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.221][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.222][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.223][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.224][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.225][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.226][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.227][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.227][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.229][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.230][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.232][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.233][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.235][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.235][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.236][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.238][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.239][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.241][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.242][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.244][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.248][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.251][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.252][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.254][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.255][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.260][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.263][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.263][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.268][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.269][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.271][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.272][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.275][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:08.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.317][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.326][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.333][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.336][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.345][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.353][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.356][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.368][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.372][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.375][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.378][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.439][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:03:08.440][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:08.440][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:08.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:08.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:08.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:08.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:08.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:08.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.490][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.500][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.504][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.507][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.510][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.513][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.528][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.541][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.550][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.550][private$selectFields]
biodb.TRACE[2025-02-08 16:03:08.551][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:08.552][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:08.552][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.553][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.554][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.556][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.557][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.559][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.560][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.562][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.563][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.565][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.566][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.569][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.570][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.572][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.576][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.577][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.578][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.581][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.582][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.583][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.584][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.585][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.586][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.587][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.588][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.589][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.590][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.590][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.591][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.592][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.593][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.594][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.594][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.595][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.602][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.603][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.604][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.607][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.608][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.609][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.610][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.611][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.612][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.612][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.613][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.614][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.615][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.616][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.617][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.618][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.618][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.619][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.620][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.621][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.622][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.623][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.624][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.624][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.625][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.626][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.627][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.628][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.629][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.629][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.630][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.631][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.632][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.632][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.633][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.635][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.635][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.636][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.638][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.638][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.639][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.641][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.641][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.642][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.644][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.645][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.645][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.647][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.648][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.648][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.649][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.650][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.651][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.652][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.653][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.653][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.654][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.655][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.656][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.656][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.657][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.658][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.658][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.659][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:08.660][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.663][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.664][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.666][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.667][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.669][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.670][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.672][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.673][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.675][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.676][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.678][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.679][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.681][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.681][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.682][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.684][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.685][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.687][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.688][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.690][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.691][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.692][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.694][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.694][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.695][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.696][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.696][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.698][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.699][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.700][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.702][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.703][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.705][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.706][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.708][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:08.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.745][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.751][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.764][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.770][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.779][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.788][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.791][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.798][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.803][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.810][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.822][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.844][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.848][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:08.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.871][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:03:08.872][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:08.872][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:08.879][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:08.880][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:08.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:08.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:08.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:08.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:08.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:08.892][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:08.895][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:08.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2025-02-08 16:03:08.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:08.898][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2025-02-08 16:03:08.900][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:08.901][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:08.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:08.902][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:08.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:08.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:08.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:08.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:08.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:08.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:08.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:08.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:08.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:08.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:08.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:08.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.946][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:08.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:08.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:08.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:08.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:08.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.965][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.968][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:08.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:08.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:08.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:08.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:08.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:08.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:08.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:08.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:08.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:08.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.005][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.011][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.015][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.015][private$selectFields]
biodb.TRACE[2025-02-08 16:03:09.016][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:09.017][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:09.018][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.019][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.019][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.020][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.021][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.022][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.023][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.024][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.026][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.027][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.028][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.029][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.031][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.031][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.032][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.034][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.035][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.037][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.038][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.039][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.040][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.041][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.042][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.043][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.044][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.045][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.046][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.047][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.048][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.049][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.052][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.053][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.055][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.056][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.057][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.058][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.062][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.062][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.065][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.066][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.068][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.069][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.071][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.072][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.074][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.075][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.078][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.080][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.081][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.083][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.084][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.086][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.087][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.089][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.090][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.090][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.092][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.092][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.093][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.095][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.095][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.098][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.099][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.101][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.103][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.110][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.111][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.116][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.117][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.118][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.119][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.120][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.121][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.123][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.124][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.125][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.126][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.127][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.129][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.129][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.130][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.131][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.132][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.134][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.135][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.137][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.138][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.139][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.140][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.140][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.141][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.143][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.144][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.144][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.147][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.147][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.148][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.149][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.150][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.151][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.151][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.152][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.153][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.154][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.154][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.155][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.156][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.159][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.160][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.160][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.162][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.163][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.165][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.167][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.168][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.169][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.170][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.171][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.172][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.174][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.175][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.178][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.179][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.181][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:09.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.227][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.252][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.267][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.273][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.277][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.283][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.295][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.313][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.339][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172631573, 3-(2-ethyl-3-fluoro-5-methyl-phenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoro-5-methylphenyl)-4H-pyrazole, 3-(2-ethyl-3-fluoranyl-5-methyl-phenyl)-4H-pyrazole, ...].
biodb.DEBUG[2025-02-08 16:03:09.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:09.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:09.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:09.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:09.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:09.347][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:09.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:09.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.393][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.400][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.403][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.406][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.409][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.413][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.416][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.457][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.460][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.463][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.464][private$selectFields]
biodb.TRACE[2025-02-08 16:03:09.465][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:09.466][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:09.466][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.467][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.470][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.471][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.471][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.474][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.475][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.477][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.478][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.479][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.479][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.480][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.481][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.482][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.483][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.484][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.485][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.486][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.487][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.488][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.488][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.489][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.491][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.492][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.493][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.494][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.496][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.497][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.497][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.499][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.499][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.500][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.502][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.502][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.504][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.505][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.507][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.508][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.510][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.511][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.512][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.513][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.514][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.515][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.516][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.517][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.518][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.519][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.520][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.521][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.522][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.523][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.524][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.525][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.526][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.528][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.529][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.531][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.531][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.532][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.533][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.535][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.535][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.536][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.538][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.538][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.539][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.541][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.541][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.542][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.544][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.544][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.547][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.548][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.550][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.551][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.552][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.553][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.554][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.555][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.555][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.556][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.557][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.558][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.558][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.562][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.563][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.564][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.565][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.565][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.566][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.567][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.569][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.569][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.570][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.571][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.572][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.573][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.573][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.575][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.576][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.577][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.578][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.578][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.579][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.580][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.581][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.582][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.583][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.584][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.586][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.587][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.589][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.590][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.592][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.593][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.596][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.596][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.599][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.600][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.602][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.603][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.605][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.607][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.607][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.610][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.611][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.612][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.613][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.613][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.616][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.617][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.618][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.619][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.626][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.627][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.630][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.631][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:09.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.689][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.692][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.696][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.702][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.705][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.709][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.718][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.722][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.725][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.728][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.731][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.734][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.740][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.743][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.768][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.775][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.790][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172608227, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, 4-ethyl-1-[(4-fluorophenyl)methyl]imidazole, ...].
biodb.DEBUG[2025-02-08 16:03:09.791][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:09.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:09.792][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:09.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:09.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:09.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:09.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:09.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.837][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.840][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.843][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.846][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.853][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.856][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.859][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.871][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.874][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.888][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.904][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.907][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.910][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.913][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.914][private$selectFields]
biodb.TRACE[2025-02-08 16:03:09.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:09.915][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:09.916][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:09.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.917][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.920][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.921][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.923][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.924][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.926][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.927][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.928][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.932][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.932][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.935][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.936][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.939][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.942][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.943][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.944][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.945][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.945][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.947][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.948][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.950][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:09.951][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.952][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.953][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:09.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:09.954][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.955][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:09.957][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.958][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.959][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.959][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:09.960][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.961][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.961][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.962][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:09.963][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.964][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.964][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.965][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:09.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.967][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.967][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:09.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:09.969][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.971][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.971][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:09.972][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.973][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.974][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.974][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:09.975][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.976][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.977][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.977][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:09.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.980][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.980][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:09.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.982][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.983][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:09.984][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.985][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.985][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:09.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:09.987][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.988][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.988][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:09.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:09.990][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.991][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.991][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.992][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:09.993][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.994][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.994][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:09.995][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:09.996][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:09.997][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:09.997][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.998][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:09.999][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.000][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.001][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.003][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.004][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.005][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.006][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.008][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.009][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.012][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.012][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.014][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.015][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.015][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.017][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.018][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.018][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.019][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.020][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.021][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.022][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.022][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.023][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.024][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.026][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.026][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.027][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.028][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.029][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.029][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.031][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.032][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.032][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.033][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.034][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.035][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.035][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.036][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.037][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.038][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.038][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.039][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.040][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.041][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.041][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.045][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.046][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.048][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.050][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.051][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.051][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.052][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.053][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.054][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.058][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.058][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.059][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.060][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.061][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.063][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.065][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.066][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.067][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.068][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.069][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.070][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.071][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:10.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.112][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.115][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.126][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.129][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.142][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.145][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.148][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.152][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.157][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.166][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.169][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.184][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.206][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172593299, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-4-imidazolyl)methanol, (3-ethyl-5-methylsulfonylimidazol-4-yl)methanol, (3-ethyl-5-methylsulfonyl-imidazol-4-yl)methanol, ...].
biodb.DEBUG[2025-02-08 16:03:10.231][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:10.232][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:10.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:10.235][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:10.236][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:10.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:10.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:10.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:10.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:10.248][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:10.251][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:10.252][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2025-02-08 16:03:10.253][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:10.254][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2025-02-08 16:03:10.256][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:10.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:10.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:10.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:10.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:10.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:10.264][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:10.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:10.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.302][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.319][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.322][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.346][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.367][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.368][private$selectFields]
biodb.TRACE[2025-02-08 16:03:10.369][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:10.369][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:10.370][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.371][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.372][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.374][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.374][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.376][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.377][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.380][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.387][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.391][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.392][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.393][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.394][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.396][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.397][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.399][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.400][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.400][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.401][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.402][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.403][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.403][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.404][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.405][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.406][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.406][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.407][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.408][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.409][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.409][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.410][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.412][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.413][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.414][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.414][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.415][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.416][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.417][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.418][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.419][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.420][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.420][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.421][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.422][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.423][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.423][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.425][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.426][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.428][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.428][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.429][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.430][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.430][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.431][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.432][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.432][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.433][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.434][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.435][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.435][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.436][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.437][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.438][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.438][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.439][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.440][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.441][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.441][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.442][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.443][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.443][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.445][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.447][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.448][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.449][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.450][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.451][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.452][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.453][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.454][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.455][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.456][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.457][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.458][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.459][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.460][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.460][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.462][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.462][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.463][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.467][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.468][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.468][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.469][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.470][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.471][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.471][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.472][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.473][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.474][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.474][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.475][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.476][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.477][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.477][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.478][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.479][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.480][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.481][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.482][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.482][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.483][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.484][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.484][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.485][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.486][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.487][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.488][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.491][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.491][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.493][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.493][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.494][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.495][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.496][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.496][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.497][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.498][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.498][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.499][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.500][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.501][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.501][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.503][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.504][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.505][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.506][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.506][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.507][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.508][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.509][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.509][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.510][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.511][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.512][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.512][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.513][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.514][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.515][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.517][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.518][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.518][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.519][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.520][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.521][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.523][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.524][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.525][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.526][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.545][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.583][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.586][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.607][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.610][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.613][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.619][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.635][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.690][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:03:10.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:10.691][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:10.692][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:10.696][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:10.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:10.698][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:10.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:10.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.738][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.753][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.799][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.802][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.803][private$selectFields]
biodb.TRACE[2025-02-08 16:03:10.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:10.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:10.805][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.806][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.808][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.809][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.811][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.812][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.814][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.815][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.817][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.818][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.820][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.821][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.823][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.832][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.839][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.840][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.841][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.847][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.848][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.849][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.850][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.850][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.851][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.854][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.854][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.855][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.856][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.859][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.860][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.861][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.862][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.863][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.865][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.866][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.866][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.867][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.868][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.869][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.870][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.871][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.872][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.872][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.874][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.886][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.887][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.888][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.889][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.890][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.892][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.893][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.893][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.894][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.895][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.896][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.898][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.898][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.899][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.900][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.901][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.902][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.903][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.904][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.905][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.906][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.907][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.908][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.909][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.910][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.912][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.913][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:10.914][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.915][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.915][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.916][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:10.917][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.918][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.919][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.920][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.921][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.923][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.924][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.926][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.927][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.928][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.929][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.930][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:10.931][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.932][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.933][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:10.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.935][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:10.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:10.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.937][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.938][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:10.939][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:10.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.940][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.942][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:10.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.945][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:10.945][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:10.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.947][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.948][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.948][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:10.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.951][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.951][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:10.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.954][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:10.954][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:10.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.956][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.957][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:10.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.959][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.960][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:10.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.962][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.962][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.963][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:10.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.966][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:10.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:10.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:10.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.979][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:10.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.986][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:10.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:10.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.023][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.026][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.029][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.038][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.048][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.051][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.054][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.057][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.061][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.067][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.080][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.083][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.086][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.110][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.123][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529292, (2S,4R)-4-[(3-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(3-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(3-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(3-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:03:11.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:11.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:11.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:11.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:11.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:11.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:11.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:11.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.177][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.180][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.183][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.196][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.199][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.205][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.238][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.244][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.244][private$selectFields]
biodb.TRACE[2025-02-08 16:03:11.245][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:11.246][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:11.246][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.247][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.248][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.249][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.250][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.250][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.251][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.253][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.253][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.254][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.256][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.257][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.258][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.259][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.259][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.260][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.261][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.262][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.263][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.263][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.264][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.266][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.267][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.269][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.270][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.272][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.273][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.275][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.276][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.278][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.279][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.281][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.284][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.290][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.291][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.292][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.292][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.293][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.294][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.295][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.295][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.297][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.298][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.300][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.303][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.304][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.306][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.309][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.310][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.312][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.313][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.314][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.315][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.316][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.318][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.324][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.325][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.327][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.328][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.330][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.331][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.331][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.334][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.334][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.336][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.338][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.338][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.340][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.341][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.343][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.344][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.345][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.346][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.347][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.348][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.349][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.350][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:11.350][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.351][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.352][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.353][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.353][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.354][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.356][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.357][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.359][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.360][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.362][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.363][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.363][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.365][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.365][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.369][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.371][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.372][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.374][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.375][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.375][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.377][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.378][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.380][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.381][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.382][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.382][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.383][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.384][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.385][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.386][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.386][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.387][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.396][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.397][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.400][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.401][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.402][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.403][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.403][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.404][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.405][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.406][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.407][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.408][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.409][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:11.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.460][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.469][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.481][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.494][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.545][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.557][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.567][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172529260, (2S,4R)-4-[(5-fluoro-2-pyridyl)oxy]pyrrolidine-2-carboxylic acid, (2S,4R)-4-[(5-fluoro-2-pyridinyl)oxy]-2-pyrrolidinecarboxylic acid, (2S,4R)-4-(5-fluoropyridin-2-yl)oxypyrrolidine-2-carboxylic acid, (2S,4R)-4-(5-fluoranylpyridin-2-yl)oxypyrrolidine-2-carboxylic acid, ...].
biodb.DEBUG[2025-02-08 16:03:11.567][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:11.568][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:03:11.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.576][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:11.600][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:11.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:11.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:11.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:11.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:11.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:11.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:11.613][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:11.616][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:11.617][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:03:11.617][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:11.618][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:03:11.620][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:11.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:11.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:11.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:11.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:11.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:11.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:11.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.666][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.676][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.679][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.689][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.695][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.697][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.720][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.723][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.738][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.739][private$selectFields]
biodb.TRACE[2025-02-08 16:03:11.739][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:11.740][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:11.741][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.741][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.742][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.743][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.744][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.746][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.747][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.747][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.748][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.751][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.753][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.754][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.755][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.757][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.758][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.758][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.759][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.760][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.760][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.761][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.762][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.764][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.764][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.765][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.766][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.766][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.767][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.769][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.770][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.772][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.775][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.775][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.778][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.781][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.783][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.784][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.785][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.787][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.788][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.790][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.791][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.792][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.793][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.794][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.796][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.797][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.798][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.799][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.800][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.801][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.802][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.803][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.804][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.804][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.805][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.806][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.808][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.809][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.811][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.812][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.816][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.817][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.818][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.818][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.819][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.820][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.821][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.823][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.824][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.824][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.825][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.826][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.827][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.828][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.831][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.832][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.833][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.833][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.834][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.835][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.835][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.836][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.837][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.838][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.838][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:11.839][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.840][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.841][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.842][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.842][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.843][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.844][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.844][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.845][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.846][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.847][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.848][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.849][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.850][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.851][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.851][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.852][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.853][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.854][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.854][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.855][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.856][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.856][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.857][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.860][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.861][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.861][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.863][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.864][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.866][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.866][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.869][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.870][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.872][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.872][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.874][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:11.875][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:11.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.877][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.878][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:11.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.880][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.881][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:11.882][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.882][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.883][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.884][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:11.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.886][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:11.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:11.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:11.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:11.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:11.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.931][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:11.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:11.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:11.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:11.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.962][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:11.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:11.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.968][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:11.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.977][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.980][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.983][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:11.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:11.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:11.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:11.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:11.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.004][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.028][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.038][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-08 16:03:12.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:12.048][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:12.049][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:12.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:12.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:12.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:12.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:12.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.071][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.111][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.120][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.123][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.141][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.144][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.147][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.157][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.162][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.162][private$selectFields]
biodb.TRACE[2025-02-08 16:03:12.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:12.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:12.164][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.165][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.168][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.169][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.171][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.172][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.175][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.175][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.177][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.178][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.181][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.181][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.184][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.184][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.185][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.186][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.187][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.187][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.188][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.189][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.190][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.191][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.192][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.192][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.193][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.194][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.195][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.195][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.196][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.197][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.198][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.199][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.200][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.203][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.203][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.206][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.207][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.209][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.209][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.212][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.213][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.215][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.217][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.218][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.219][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.220][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.221][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.222][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.224][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.225][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.227][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.228][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.229][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.230][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.231][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.233][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.240][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.241][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.243][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.244][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.246][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.247][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.249][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.250][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.252][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.253][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.255][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.256][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.258][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.259][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.261][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.262][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.264][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.265][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.266][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.266][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.267][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.269][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.270][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.270][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.272][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.273][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.275][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.275][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.276][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.277][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.278][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.279][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.280][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.280][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.281][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.283][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.284][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.285][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.286][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.287][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.288][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.288][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.292][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.292][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.295][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.295][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.298][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.300][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.301][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.303][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.304][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.306][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.306][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.307][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.309][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.310][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.312][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:12.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.406][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.414][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.429][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.454][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.461][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.463][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.473][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-02-08 16:03:12.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:12.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:12.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:12.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:12.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:12.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:12.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:12.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.525][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.528][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.534][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.537][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.540][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.551][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.567][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.579][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.579][private$selectFields]
biodb.TRACE[2025-02-08 16:03:12.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:12.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:12.582][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.582][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.583][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.584][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.585][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.586][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.586][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.587][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.588][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.588][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.589][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.591][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.591][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.592][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.593][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.594][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.595][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.595][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.596][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.597][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.598][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.598][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.599][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.600][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.600][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.601][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.602][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.603][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.603][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.605][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.606][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.606][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.607][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.608][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.608][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.609][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.610][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.611][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.612][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.613][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.614][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.614][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.615][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.616][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.616][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.617][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.618][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.619][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.619][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.620][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.621][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.622][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.623][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.624][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.624][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.625][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.626][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.626][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.627][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.628][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.629][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.629][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.630][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.631][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.632][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.632][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.633][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.634][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.635][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.635][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.636][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.637][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.637][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.638][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.639][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.641][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.642][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.643][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.644][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.645][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.646][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.653][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.654][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.655][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.657][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.658][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.660][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.663][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.664][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.666][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.669][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.670][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.672][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.673][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.678][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.679][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.681][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.682][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.684][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.685][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:12.686][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.687][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.689][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.689][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.691][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.691][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.692][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.693][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.694][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.695][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.697][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.698][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.699][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.700][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.701][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.701][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.702][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.703][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.704][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.704][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.705][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.706][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.706][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.708][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.710][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.711][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.712][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.714][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.714][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.715][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.716][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.717][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.718][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.720][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.726][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.726][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.728][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.729][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.731][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:12.732][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.756][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.786][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.803][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.806][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.815][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.818][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.835][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.838][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:12.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.857][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-02-08 16:03:12.882][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:12.882][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:12.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:12.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:12.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:12.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:12.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:12.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:12.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:12.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:12.909][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:12.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:03:12.911][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:12.912][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:03:12.913][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:12.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:12.915][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:12.916][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:12.920][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:12.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:12.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:12.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:12.923][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:12.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.936][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:12.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:12.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:12.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.960][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:12.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:12.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:12.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:12.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.972][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:12.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.979][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.982][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:12.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:12.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:12.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:12.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:12.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.017][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.020][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.023][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.024][private$selectFields]
biodb.TRACE[2025-02-08 16:03:13.025][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:13.026][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:13.026][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.027][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.028][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.029][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.030][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.030][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.031][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.032][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.033][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.034][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.035][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.035][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.036][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.037][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.038][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.038][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.039][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.040][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.041][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.041][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.042][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.043][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.044][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.045][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.046][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.047][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.047][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.048][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.049][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.050][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.051][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.051][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.052][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.055][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.055][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.056][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.057][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.058][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.059][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.062][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.063][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.064][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.066][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.069][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.070][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.071][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.073][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.073][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.074][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.077][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.077][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.078][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.079][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.080][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.081][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.082][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.083][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.084][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.084][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.085][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.086][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.087][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.087][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.088][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.089][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.090][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.091][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.091][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.092][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.093][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.094][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.095][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.096][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.097][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.098][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.099][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.100][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.100][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.101][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.102][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.104][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.105][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.106][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.107][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.108][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.109][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.110][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.110][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.111][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.112][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.113][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.114][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.115][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.118][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.118][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.119][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.120][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.121][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.122][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.123][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.124][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.125][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.126][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.127][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.128][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.128][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.129][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.130][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.131][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.131][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.132][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.133][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.134][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.135][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.136][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.137][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.138][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.139][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.140][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.140][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.141][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.142][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.143][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.144][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.145][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.147][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.147][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.159][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.160][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.161][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.162][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.162][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.163][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.165][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.165][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.166][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.169][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.169][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.172][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.173][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.174][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.176][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.177][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.178][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.179][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.180][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.181][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.182][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.182][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.183][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.184][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:13.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.245][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.257][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.276][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.279][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.284][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.312][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.321][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.324][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:03:13.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:13.340][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:13.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:13.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:13.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:13.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:13.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:13.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.384][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.405][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.409][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.413][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.428][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.453][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.453][private$selectFields]
biodb.TRACE[2025-02-08 16:03:13.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:13.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:13.455][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.456][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.459][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.460][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.461][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.462][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.463][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.465][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.466][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.468][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.469][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.470][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.471][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.471][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.473][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.474][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.474][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.477][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.477][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.478][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.479][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.479][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.480][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.481][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.482][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.482][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.483][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.485][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.486][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.487][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.487][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.488][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.489][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.490][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.491][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.492][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.493][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.494][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.495][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.497][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.498][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.499][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.499][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.500][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.501][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.502][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.502][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.503][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.505][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.506][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.506][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.507][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.508][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.509][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.509][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.510][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.511][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.511][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.512][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.513][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.514][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.514][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.515][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.516][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.516][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.518][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.519][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.519][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.520][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.521][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.522][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.523][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.524][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.525][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.525][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.526][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.527][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.528][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.529][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.529][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.530][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.531][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.532][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.533][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.534][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.537][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.537][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.538][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.543][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.543][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.544][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.545][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.545][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.546][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.547][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.548][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.548][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.549][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.550][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.551][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.551][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.552][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.553][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.553][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.554][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.555][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.556][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.556][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.557][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.558][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.559][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.560][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.560][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.561][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.562][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.562][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.563][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.564][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.565][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.565][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.566][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.567][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.568][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.568][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.569][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.571][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.572][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.572][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.573][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.574][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.576][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.577][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.578][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.578][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.579][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.580][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.580][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.581][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.584][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.585][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.586][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.587][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.587][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.588][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.589][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.590][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.590][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.591][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.592][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.593][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.594][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.594][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.595][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.596][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.596][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.597][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.598][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.599][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:13.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.688][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.692][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.698][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.733][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.749][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-08 16:03:13.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:13.760][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:13.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:13.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:13.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:13.766][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:13.767][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:13.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.795][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.807][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.810][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.813][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.822][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.825][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.828][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.844][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.856][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.865][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.866][private$selectFields]
biodb.TRACE[2025-02-08 16:03:13.866][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:13.867][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:13.868][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.868][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.869][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.871][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.872][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.873][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.874][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.875][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.876][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.877][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.878][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.879][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.879][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.880][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.881][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.881][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.882][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.883][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.884][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.886][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.887][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.888][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.888][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.889][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.890][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.891][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.891][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.898][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.900][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.901][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.902][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.903][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.904][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.905][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.906][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.907][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.907][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.910][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.911][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.912][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.912][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.913][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.914][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.917][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.917][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.918][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.919][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.920][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.921][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.921][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.922][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.923][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.924][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.924][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.925][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.926][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.927][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.928][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.929][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.930][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.930][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.931][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.932][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.933][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.935][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.936][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.938][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.939][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.940][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.941][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.941][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.942][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.943][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.944][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.944][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.945][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.946][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.946][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.947][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.948][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.949][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.950][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.950][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:13.951][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:13.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.954][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.954][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:13.955][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.956][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.957][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:13.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.959][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.960][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:13.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:13.961][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.962][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.962][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.963][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:13.964][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.965][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.965][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.966][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:13.967][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.968][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.968][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.969][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:13.970][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.970][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.971][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.972][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:13.973][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:13.973][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:13.974][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.975][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.975][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.976][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:13.977][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.978][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.979][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.979][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:13.980][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.981][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.982][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.982][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:13.983][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.985][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.985][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:13.986][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.987][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.988][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.988][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:13.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.991][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:13.991][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:13.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.994][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:13.994][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:13.995][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.996][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:13.997][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.998][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:13.998][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:13.999][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.000][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.000][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.001][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.002][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.004][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.005][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.008][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.008][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.009][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.010][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.011][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.013][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.014][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.015][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.016][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.016][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.017][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.018][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.018][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.019][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.020][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:14.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.075][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.087][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.090][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.096][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.099][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.116][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.151][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.154][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.159][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.162][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.166][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.169][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.178][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-08 16:03:14.178][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:14.179][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:14.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:14.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:14.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:14.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:14.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:14.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:14.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:14.198][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:14.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:14.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2025-02-08 16:03:14.202][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:14.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2025-02-08 16:03:14.204][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:14.205][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:14.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:14.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:14.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:14.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:14.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:14.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:14.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.220][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.252][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.270][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.276][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.284][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.287][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.302][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.309][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.315][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.316][private$selectFields]
biodb.TRACE[2025-02-08 16:03:14.317][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:14.317][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:14.318][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.319][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.319][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.321][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.322][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.324][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.325][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.327][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.328][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.330][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.331][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.333][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.334][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.335][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.335][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.336][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.337][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.337][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.338][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.339][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.340][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.341][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.342][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.343][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.345][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.345][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.346][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.348][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.348][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.350][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.351][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.353][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.354][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.355][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.358][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.359][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.360][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.361][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.362][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.363][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.364][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.365][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.366][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.366][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.368][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.369][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.371][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.372][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.374][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.374][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.377][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.378][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.379][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.380][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.381][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.381][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.389][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.390][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.391][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.393][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.395][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.395][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.396][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.397][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.398][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.398][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.399][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.400][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.401][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.402][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.403][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.404][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.404][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.405][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.406][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.406][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.409][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.410][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.411][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.411][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.412][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.413][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.414][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.415][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.415][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.416][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.417][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.419][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.420][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.420][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.421][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.422][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.423][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.423][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.424][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.425][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.426][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.427][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.428][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.429][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.430][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.431][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.431][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.432][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.433][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.434][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.434][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.435][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.436][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.437][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.437][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.438][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.439][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.439][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.440][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.441][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.441][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.442][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.443][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.444][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.444][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.445][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.447][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.448][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.449][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.450][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.451][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.452][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.452][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.453][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.454][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.454][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.455][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.456][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.456][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.457][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.458][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.459][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.459][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.460][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.461][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.461][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.462][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.463][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.464][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.464][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.465][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.466][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.467][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.469][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.470][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.471][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.472][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.472][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.473][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.474][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.475][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.476][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:14.477][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.538][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.559][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.562][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.580][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.586][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.589][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.615][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.618][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172623142, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-(3-methylanilino)-1-azetidinyl]ethanone, 1-[3-(3-methylanilino)azetidin-1-yl]ethanone, 1-[3-[(3-methylphenyl)amino]azetidin-1-yl]ethanone, ...].
biodb.DEBUG[2025-02-08 16:03:14.635][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:14.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:14.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:14.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:14.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:14.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:14.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:14.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.681][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.684][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.693][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.705][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.708][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.711][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.714][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.739][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.752][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.752][private$selectFields]
biodb.TRACE[2025-02-08 16:03:14.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:14.754][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:14.755][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.756][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.759][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.760][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.762][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.763][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.765][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.765][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.767][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.768][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.771][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.771][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.773][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.773][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.776][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.777][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.778][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.779][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.780][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.782][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.782][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.783][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.785][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.785][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.786][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.787][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.788][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.790][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.791][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.793][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.798][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.799][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.800][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.801][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.802][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.802][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.803][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.804][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.805][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.805][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.806][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.807][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.807][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.808][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.809][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.810][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.811][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.812][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.812][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.813][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.814][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.814][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.815][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.816][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.818][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.819][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.819][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.820][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.821][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.821][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.822][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.823][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.824][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.824][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.825][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.826][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.827][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.828][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.828][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.829][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.830][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.833][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.833][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.834][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.835][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.835][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.836][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.837][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.838][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.840][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.841][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.843][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.843][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.845][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.845][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.846][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.847][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.848][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.848][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.849][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.850][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.851][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.852][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.852][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.853][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.854][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:14.854][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.855][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.856][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.856][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:14.857][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.858][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.859][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.860][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.861][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.862][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.863][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.864][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.864][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.865][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.866][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.866][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.867][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.868][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.869][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.870][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.870][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.871][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.872][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.873][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.873][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.874][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.875][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.876][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.876][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.877][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.878][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.885][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.886][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.887][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.888][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.889][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.890][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.891][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.892][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.893][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.894][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.895][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.895][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:14.896][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.897][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:14.899][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.900][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.900][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:14.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:14.902][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.903][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.904][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:14.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.907][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.908][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:14.908][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.909][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.910][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.911][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:14.911][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.912][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.913][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:14.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:14.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.923][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:14.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:14.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:14.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:14.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.959][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:14.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:14.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:14.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.985][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:14.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:14.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.988][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.991][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:14.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:14.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:14.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.003][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.015][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.025][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.049][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.055][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.058][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172622621, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, 4-(cyclopropylmethyl)-2,3-dihydro-1,4-benzoxazin-7-amine, ...].
biodb.DEBUG[2025-02-08 16:03:15.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:15.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:15.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:15.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:15.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:15.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:15.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:15.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.086][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.095][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.112][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.115][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.121][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.124][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.143][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.167][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.176][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.185][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.186][private$selectFields]
biodb.TRACE[2025-02-08 16:03:15.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:15.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:15.188][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.188][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.191][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.192][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.193][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.194][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.194][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.195][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.197][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.198][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.200][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.201][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.202][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.203][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.204][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.204][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.205][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.206][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.209][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.210][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.210][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.211][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.212][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.213][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.214][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.215][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.215][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.217][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.218][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.221][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.221][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.224][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.224][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.225][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.226][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.227][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.227][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.228][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.229][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.229][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.230][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.231][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.232][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.232][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.233][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.235][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.236][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.237][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.238][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.238][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.240][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.240][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.241][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.242][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.243][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.244][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.244][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.245][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.247][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.248][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.248][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.249][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.250][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.251][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.252][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.253][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.254][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.254][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.255][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.256][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.257][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.257][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.258][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.259][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.259][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.263][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.264][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.264][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.265][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.266][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.269][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.269][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.270][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.271][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.272][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.273][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.274][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.274][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.275][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.276][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.278][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.279][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.279][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.282][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.282][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.285][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.285][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.287][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.287][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.288][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.289][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.290][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.290][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.292][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.293][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.295][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.296][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.297][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.298][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.299][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.299][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.300][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.301][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.301][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.302][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.303][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.303][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.304][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.305][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.306][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.307][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.308][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.308][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.309][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.310][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.311][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.313][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.314][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.315][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.316][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.316][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.317][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.318][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.318][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.319][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.320][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.320][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.321][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.323][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.324][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.325][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.326][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.328][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.329][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.330][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.331][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.332][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.333][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.334][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.335][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:15.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.357][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.376][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.387][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.399][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.402][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.405][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.408][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.411][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.414][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.420][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.426][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.429][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.432][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.438][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.450][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.453][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.459][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.471][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.477][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.486][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172602027, 3-isopropyl-6-[(Z)-prop-1-enyl]-5-vinyl-pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]-4-pyrimidinone, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, 5-ethenyl-3-propan-2-yl-6-[(Z)-prop-1-enyl]pyrimidin-4-one, ...].
biodb.DEBUG[2025-02-08 16:03:15.496][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:15.497][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2025-02-08 16:03:15.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:15.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:15.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:15.505][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:15.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:15.507][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:15.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:15.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2025-02-08 16:03:15.515][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2025-02-08 16:03:15.516][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2025-02-08 16:03:15.517][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:15.518][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2025-02-08 16:03:15.519][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2025-02-08 16:03:15.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:15.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:15.522][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:15.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:15.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:15.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:15.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:15.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.566][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.575][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.584][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.587][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.605][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.632][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.638][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.641][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.642][private$selectFields]
biodb.TRACE[2025-02-08 16:03:15.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:15.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:15.644][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.646][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.647][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.648][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.649][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.650][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.651][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.652][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.654][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.655][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.657][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.658][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.660][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.663][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.665][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.666][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.668][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.669][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.669][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.670][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.671][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.672][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.672][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.673][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.675][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.675][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.676][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.677][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.678][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.678][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.679][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.681][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.682][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.683][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.686][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.687][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.688][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.689][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.690][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.691][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.691][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.692][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.693][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.693][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.694][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.695][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.696][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.697][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.698][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.699][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.700][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.700][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.701][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.702][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.702][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.705][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.706][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.707][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.707][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.708][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.709][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.709][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.710][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.711][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.712][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.713][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.714][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.715][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.716][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.717][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.718][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.718][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.719][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.720][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.721][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.721][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.722][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.723][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.724][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.724][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.725][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.726][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.727][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.727][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.728][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.729][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.729][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.730][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.731][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.732][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.732][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.734][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.736][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.737][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.737][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.738][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.739][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.740][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.741][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.741][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.742][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.743][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.743][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.744][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:15.745][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.746][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.746][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.747][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:15.748][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.749][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.750][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.751][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.752][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.753][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.754][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.755][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.756][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.756][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.757][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.758][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.759][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.759][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.760][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.761][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.762][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.763][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.763][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.764][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.766][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.767][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.768][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.768][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.770][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.770][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.771][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.772][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.773][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:15.773][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.774][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.775][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:15.776][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:15.776][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.777][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.778][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.779][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:15.779][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.780][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.781][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.781][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:15.782][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.783][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.783][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:15.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:15.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.787][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:15.788][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.789][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.790][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.791][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:15.791][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.792][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.793][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.794][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:15.794][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.795][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.796][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:15.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:15.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:15.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:15.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.830][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:15.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:15.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.855][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.859][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:15.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:15.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:15.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:15.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.033][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.045][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.048][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.051][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.055][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.058][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.060][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.090][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.096][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.101][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.104][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.107][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172642450, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-3-hydroxy-5-(hydroxymethyl)-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(2R,3S)-5-(hydroxymethyl)-3-oxidanyl-2,3-dihydrofuran-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2025-02-08 16:03:16.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:16.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:16.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:16.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:16.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:16.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:16.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.142][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.172][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.178][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.181][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.184][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.196][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.209][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.221][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.224][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.227][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.227][private$selectFields]
biodb.TRACE[2025-02-08 16:03:16.228][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:16.229][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:16.230][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.231][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.231][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.233][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.233][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.234][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.235][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.237][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.237][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.238][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.239][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.240][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.240][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.241][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.242][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.242][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.243][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.244][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.245][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.246][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.246][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.247][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.248][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.248][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.253][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.254][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.254][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.257][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.258][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.259][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.260][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.262][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.263][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.263][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.264][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.265][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.265][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.266][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.267][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.268][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.268][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.269][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.270][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.271][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.272][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.273][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.273][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.274][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.275][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.276][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.278][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.279][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.280][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.281][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.281][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.282][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.283][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.284][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.285][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.285][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.286][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.292][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.294][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.295][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.296][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.296][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.297][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.298][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.298][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.299][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.300][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.300][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.301][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.302][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.302][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.303][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.304][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.305][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.306][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.307][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.307][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.308][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.309][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.309][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.310][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.311][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.311][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.312][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.313][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.313][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.315][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.316][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.318][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.319][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.323][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.324][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.325][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.325][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.326][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.327][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.327][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.328][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.329][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.329][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.330][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.331][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.331][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.332][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.333][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.333][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.334][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.335][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.336][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.336][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.337][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.338][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.339][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.339][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.340][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.341][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.341][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.342][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.343][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.343][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.344][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.345][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.345][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.346][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.347][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.347][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.348][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.349][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.349][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.350][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.351][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.354][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.355][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.355][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.357][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.358][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.358][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.359][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.360][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.361][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.362][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.363][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.364][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.365][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.367][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.368][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.368][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.370][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.370][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.373][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.374][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.375][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.376][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.378][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.379][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.380][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:16.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.395][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.434][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.437][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.440][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.457][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.460][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.463][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.466][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.484][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.493][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.508][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.516][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.519][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.528][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172641880, [(4S,5R)-5-ethyl-2,4-dihydroxy-tetrahydrofuran-3-yl] methanesulfonate, methanesulfonic acid [(4S,5R)-5-ethyl-2,4-dihydroxy-3-oxolanyl] ester, [(4S,5R)-5-ethyl-2,4-dihydroxyoxolan-3-yl] methanesulfonate, [(4S,5R)-5-ethyl-2,4-bis(oxidanyl)oxolan-3-yl] methanesulfonate, ...].
biodb.DEBUG[2025-02-08 16:03:16.529][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:16.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:16.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:16.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:16.539][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:16.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.540][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:16.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.571][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.589][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.595][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.607][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.613][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.630][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.636][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.642][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.643][private$selectFields]
biodb.TRACE[2025-02-08 16:03:16.643][private$selectFields] Fields is null: FALSE
biodb.TRACE[2025-02-08 16:03:16.644][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2025-02-08 16:03:16.645][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.645][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.647][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.648][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.648][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.649][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.650][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.651][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.651][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.652][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.653][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.654][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.655][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.656][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.656][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.657][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.658][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.659][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.660][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.661][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.663][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.664][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.664][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.665][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.666][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.667][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.668][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.669][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.670][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.671][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.672][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.673][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.674][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.675][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.676][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.677][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.678][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.678][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.679][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.680][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.681][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.682][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.683][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.684][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.685][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.686][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.686][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.687][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.688][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.689][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.689][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.690][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.691][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.691][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.692][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.694][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.695][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.696][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.697][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.698][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.698][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.700][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.700][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.701][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.702][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.703][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.704][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.704][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.705][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.706][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.707][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.707][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.708][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.709][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.710][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.710][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.711][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.712][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.713][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.713][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.714][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.715][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.716][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.716][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.717][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.718][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.718][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.719][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.721][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.722][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.723][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.724][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.724][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.725][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.726][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.727][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.727][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.728][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.729][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.730][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.730][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.731][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.732][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.733][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.735][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.736][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.737][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.738][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.739][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.739][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.740][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.741][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.742][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.742][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.743][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2025-02-08 16:03:16.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.746][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.746][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2025-02-08 16:03:16.747][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.749][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.749][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.750][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.751][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.752][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.752][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.754][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.756][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.757][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.757][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.758][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.759][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.759][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.760][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.761][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.762][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.762][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.763][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.764][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.764][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.767][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.768][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.769][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.770][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.770][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.771][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.772][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.772][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.773][ef$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.774][ef$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.775][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.776][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.777][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.779][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.780][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.781][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.781][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.782][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.783][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.784][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.784][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.786][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.791][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.791][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.792][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.793][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.794][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.794][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.795][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.796][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.797][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2025-02-08 16:03:16.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:16.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:16.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.807][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2025-02-08 16:03:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.815][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.818][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2025-02-08 16:03:16.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2025-02-08 16:03:16.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-08 16:03:16.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-08 16:03:16.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.850][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.853][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.856][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-08 16:03:16.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-08 16:03:16.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.859][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.862][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-08 16:03:16.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-08 16:03:16.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.868][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-08 16:03:16.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.876][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.879][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.882][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2025-02-08 16:03:16.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2025-02-08 16:03:16.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.891][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2025-02-08 16:03:16.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.897][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-08 16:03:16.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.903][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.906][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.909][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-08 16:03:16.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-08 16:03:16.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:16.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.924][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2025-02-08 16:03:16.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.934][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2025-02-08 16:03:16.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.946][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [172634706, 3-(3-chloropropyl)-6-fluoro-1-methyl-indazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloropropyl)-6-fluoro-1-methylindazole, 3-(3-chloranylpropyl)-6-fluoranyl-1-methyl-indazole, ...].
biodb.DEBUG[2025-02-08 16:03:16.947][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2025-02-08 16:03:16.948][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2025-02-08 16:03:16.952][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:16.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:16.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:16.955][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2025-02-08 16:03:16.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:16.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:03:16.961][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:03:16.962][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2025-02-08 16:03:16.963][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2025-02-08 16:03:16.963][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:03:16.964][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:16.964][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:16.965][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:16.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:16.967][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-08 16:03:16.970][biodb::testContext]
biodb.INFO [2025-02-08 16:03:16.971][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:03:16.972][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2025-02-08 16:03:16.973][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-08 16:03:16.973][biodb::testContext]
biodb.INFO [2025-02-08 16:03:16.975][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:03:16.976][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-08 16:03:16.979][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:03:16.980][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-08 16:03:16.980][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-08 16:03:16.981][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:16.982][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:16.983][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-08 16:03:16.984][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-08 16:03:16.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:16.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:16.987][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-08 16:03:16.987][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-08 16:03:16.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:16.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:16.990][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-08 16:03:16.990][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-08 16:03:16.991][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-08 16:03:16.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:16.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:16.994][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-08 16:03:16.995][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-08 16:03:16.996][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-08 16:03:16.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:16.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:16.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:16.998][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-08 16:03:16.999][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-08 16:03:17.000][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.002][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-08 16:03:17.003][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-08 16:03:17.003][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-08 16:03:17.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.006][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-08 16:03:17.007][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-08 16:03:17.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.009][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.009][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-08 16:03:17.010][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-08 16:03:17.011][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-08 16:03:17.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.013][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:03:17.014][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-08 16:03:17.015][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-08 16:03:17.015][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-08 16:03:17.016][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-08 16:03:17.017][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-08 16:03:17.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.019][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-08 16:03:17.020][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-08 16:03:17.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.023][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-08 16:03:17.024][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-08 16:03:17.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.026][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-08 16:03:17.027][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-08 16:03:17.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.030][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-08 16:03:17.031][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-08 16:03:17.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.033][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-08 16:03:17.034][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-08 16:03:17.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.037][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-08 16:03:17.041][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-08 16:03:17.057][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-08 16:03:17.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.060][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-08 16:03:17.061][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-08 16:03:17.061][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-08 16:03:17.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.064][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-08 16:03:17.065][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.066][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-08 16:03:17.067][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.068][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.068][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.069][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.070][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.071][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.071][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:03:17.072][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.073][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.074][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-08 16:03:17.074][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.075][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.076][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.076][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:17.076][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:03:17.076][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:03:17.076][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:03:17.076][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:03:17.077][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:17.078][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.078][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.079][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.080][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.081][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.082][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.083][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.083][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.084][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.085][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.086][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-08 16:03:17.087][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.088][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:03:17.088][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.089][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.090][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.090][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.091][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.092][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.092][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:03:17.093][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.094][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.094][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-08 16:03:17.095][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.096][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.097][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.097][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:17.097][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:03:17.097][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:03:17.097][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-08 16:03:17.097][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-08 16:03:17.098][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:17.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.099][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.100][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.101][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.101][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.102][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.103][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.103][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.104][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.105][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.105][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.106][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-08 16:03:17.107][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.108][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-08 16:03:17.109][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.110][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.110][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.111][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.112][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.113][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.113][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-08 16:03:17.114][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.115][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.115][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-08 16:03:17.116][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.117][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.117][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.118][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.119][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:17.120][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.120][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.121][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.122][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.122][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.123][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.124][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.124][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.125][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.126][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.126][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.127][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-08 16:03:17.129][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.129][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-08 16:03:17.130][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.131][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.132][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.132][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.133][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.134][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.134][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-08 16:03:17.135][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.136][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.136][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-08 16:03:17.137][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.138][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.138][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.139][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.140][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-08 16:03:17.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.142][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.143][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.144][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.144][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.145][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.146][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.146][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.147][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.148][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.149][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:03:17.149][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.154][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.159][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.167][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.176][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.180][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.181][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.182][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.207][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-08 16:03:17.208][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-08 16:03:17.209][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-08 16:03:17.210][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-08 16:03:17.211][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-08 16:03:17.212][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-08 16:03:17.213][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-08 16:03:17.214][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-08 16:03:17.215][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-08 16:03:17.216][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-08 16:03:17.217][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-08 16:03:17.218][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-08 16:03:17.219][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-08 16:03:17.220][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-08 16:03:17.221][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:03:17.222][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:03:17.223][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-08 16:03:17.224][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-08 16:03:17.225][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-08 16:03:17.226][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-08 16:03:17.227][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-08 16:03:17.228][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-08 16:03:17.229][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-08 16:03:17.230][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-08 16:03:17.231][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-08 16:03:17.232][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-08 16:03:17.233][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-08 16:03:17.234][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-08 16:03:17.235][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-08 16:03:17.236][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-08 16:03:17.237][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-08 16:03:17.238][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-08 16:03:17.239][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-08 16:03:17.240][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-08 16:03:17.241][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-08 16:03:17.242][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-08 16:03:17.243][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-08 16:03:17.244][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-08 16:03:17.245][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-08 16:03:17.246][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-08 16:03:17.247][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-08 16:03:17.248][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-08 16:03:17.249][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-08 16:03:17.250][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-08 16:03:17.251][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-08 16:03:17.252][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:03:17.253][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-08 16:03:17.254][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-08 16:03:17.255][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-08 16:03:17.256][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-08 16:03:17.257][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-08 16:03:17.259][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-08 16:03:17.260][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-08 16:03:17.261][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-08 16:03:17.262][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-08 16:03:17.262][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-08 16:03:17.264][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-08 16:03:17.265][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-08 16:03:17.266][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-08 16:03:17.267][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-08 16:03:17.268][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-08 16:03:17.269][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-08 16:03:17.270][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-08 16:03:17.271][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-08 16:03:17.271][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-08 16:03:17.272][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-08 16:03:17.273][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-08 16:03:17.274][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-08 16:03:17.275][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-08 16:03:17.276][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-08 16:03:17.278][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-08 16:03:17.279][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-08 16:03:17.280][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-08 16:03:17.280][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-08 16:03:17.281][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-08 16:03:17.282][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-08 16:03:17.283][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-08 16:03:17.284][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-08 16:03:17.285][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-08 16:03:17.286][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-08 16:03:17.287][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-08 16:03:17.288][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-08 16:03:17.290][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-08 16:03:17.291][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-08 16:03:17.292][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-08 16:03:17.293][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-08 16:03:17.298][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.299][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.341][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.347][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.361][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.366][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-08 16:03:17.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-08 16:03:17.379][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2025-02-08 16:03:17.381][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2025-02-08 16:03:17.382][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.383][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2025-02-08 16:03:17.384][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.384][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.385][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.386][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.387][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.387][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.388][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2025-02-08 16:03:17.389][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.390][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.390][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2025-02-08 16:03:17.391][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.392][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2025-02-08 16:03:17.392][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2025-02-08 16:03:17.393][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.394][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.394][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:03:17.395][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.396][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.396][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.397][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.398][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.398][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.399][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2025-02-08 16:03:17.399][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2025-02-08 16:03:17.400][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.401][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.402][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.403][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2025-02-08 16:03:17.404][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.405][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2025-02-08 16:03:17.406][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.406][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.407][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.408][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.408][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.409][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.410][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:03:17.411][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.412][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.412][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2025-02-08 16:03:17.413][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2025-02-08 16:03:17.414][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.415][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:17.416][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-08 16:03:17.416][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.417][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.418][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.419][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.419][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.420][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.421][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:17.421][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:03:17.422][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.422][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.423][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.424][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.424][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2025-02-08 16:03:17.426][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.426][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2025-02-08 16:03:17.427][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.428][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.429][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.429][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.430][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.431][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.432][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:03:17.432][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.433][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.434][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.435][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2025-02-08 16:03:17.436][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.437][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-08 16:03:17.437][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-08 16:03:17.437][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-08 16:03:17.438][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:03:17.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.440][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.442][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.443][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:17.443][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:03:17.443][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:03:17.443][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.444][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.445][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.445][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:03:17.446][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:03:17.448][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.449][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2025-02-08 16:03:17.449][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.450][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-08 16:03:17.451][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.451][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.452][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.453][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.453][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-08 16:03:17.454][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-08 16:03:17.455][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.456][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2025-02-08 16:03:17.457][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-08 16:03:17.457][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2025-02-08 16:03:17.457][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2025-02-08 16:03:17.458][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-08 16:03:17.459][self$setPropertyValue]
biodb.DEBUG[2025-02-08 16:03:17.460][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2025-02-08 16:03:17.460][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.461][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.462][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-08 16:03:17.463][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-08 16:03:17.463][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-08 16:03:17.464][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-08 16:03:17.465][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2025-02-08 16:03:17.465][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2025-02-08 16:03:17.465][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2025-02-08 16:03:17.466][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-08 16:03:17.466][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-08 16:03:17.467][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-08 16:03:17.468][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:03:17.469][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2025-02-08 16:03:17.470][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-08 16:03:17.471][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-08 16:03:17.473][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2025-02-08 16:03:17.474][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-08 16:03:17.475][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2025-02-08 16:03:17.479][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:03:17.480][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2025-02-08 16:03:17.481][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2025-02-08 16:03:17.482][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-08 16:03:17.483][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:03:17.484][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:03:17.485][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2025-02-08 16:03:17.486][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:03:17.487][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2025-02-08 16:03:17.488][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2025-02-08 16:03:17.491][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2025-02-08 16:03:17.494][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.495][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-08 16:03:17.496][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.497][biodb::testThat]
biodb.TRACE[2025-02-08 16:03:17.499][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2025-02-08 16:03:17.500][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:03:17.502][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-08 16:03:17.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:17.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.504][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.510][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:17.513][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.516][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.522][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.522][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.529][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:17.561][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2025-02-08 16:03:17.563][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:17.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.571][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.574][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.577][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:17.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:17.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.580][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:17.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:17.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.638][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.639][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.640][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.640][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.657][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.661][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.661][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.662][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.672][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.673][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.674][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.679][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.679][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.680][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.681][ef$get] fields variable is a list.
biodb.INFO [2025-02-08 16:03:17.688][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.689][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-08 16:03:17.689][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.690][biodb::testThat]
biodb.DEBUG[2025-02-08 16:03:17.692][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2025-02-08 16:03:17.693][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2025-02-08 16:03:17.695][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2025-02-08 16:03:17.696][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-08 16:03:17.698][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2025-02-08 16:03:17.698][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2025-02-08 16:03:17.699][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2025-02-08 16:03:17.700][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2025-02-08 16:03:17.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-08 16:03:17.702][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:17.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:17.707][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:17.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:17.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:17.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-08 16:03:17.711][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.712][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.713][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.714][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-08 16:03:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2025-02-08 16:03:17.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-08 16:03:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-08 16:03:17.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-08 16:03:17.754][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2025-02-08 16:03:17.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-08 16:03:17.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-08 16:03:17.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:03:17.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-08 16:03:17.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:03:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-08 16:03:17.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:03:17.770][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.770][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-08 16:03:17.771][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.772][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.777][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.778][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-08 16:03:17.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.779][biodb::testThat]
biodb.WARN [2025-02-08 16:03:17.781][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2025-02-08 16:03:17.784][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2025-02-08 16:03:17.791][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.792][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-08 16:03:17.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.793][biodb::testThat]
biodb.TRACE[2025-02-08 16:03:17.801][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.804][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.810][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.813][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.816][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:17.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:17.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.823][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:17.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:17.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.834][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.837][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2025-02-08 16:03:17.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.840][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:17.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2025-02-08 16:03:17.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.846][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-08 16:03:17.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.848][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:17.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-08 16:03:17.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-08 16:03:17.851][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:17.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-08 16:03:17.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-08 16:03:17.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-08 16:03:17.859][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.860][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-08 16:03:17.860][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.861][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.868][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.869][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-08 16:03:17.869][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.870][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.876][biodb::testThat]
biodb.INFO [2025-02-08 16:03:17.877][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-08 16:03:17.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:17.878][biodb::testThat]
biodb.DEBUG[2025-02-08 16:03:17.881][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2025-02-08 16:03:17.977][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2025-02-08 16:03:18.105][biodb::testThat]
biodb.INFO [2025-02-08 16:03:18.106][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-08 16:03:18.107][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-08 16:03:18.108][biodb::testThat]
biodb.DEBUG[2025-02-08 16:03:18.243][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2025-02-08 16:03:18.399][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-08 16:03:18.400][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2025-02-08 16:03:18.401][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2025-02-08 16:03:18.402][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-08 16:03:18.402][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-08 16:03:18.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-08 16:03:18.404][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-08 16:03:18.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-08 16:03:18.405][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-08 16:03:18.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1031 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1031 ]
> 
> proc.time()
   user  system elapsed 
 34.950   1.632  70.818

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R Under development (unstable) (2025-01-22 r87618)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.11.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... INFO
  installed size is  8.1Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  NcbiCcdsConn.Rd: BiodbFactory, BiodbConn
  NcbiCcdsEntry.Rd: BiodbHtmlEntry
  NcbiEntrezConn.Rd: BiodbConn
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.

Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** this is package ‘biodbNcbi’ version ‘1.11.0’
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)