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This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 2244/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
trigger 1.54.0  (landing page)
John D. Storey
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/trigger
git_branch: RELEASE_3_21
git_last_commit: c93275c
git_last_commit_date: 2025-04-15 10:11:43 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  ERROR    ERROR  skipped
merida1macOS 12.7.6 Monterey / x86_64  ERROR    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  ERROR    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  ERROR    ERROR  skipped

INSTALL results for trigger on kunpeng2

To the developers/maintainers of the trigger package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/trigger.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
- See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host.

raw results


Summary

Package: trigger
Version: 1.54.0
Command: /home/biocbuild/R/R/bin/R CMD INSTALL trigger
StartedAt: 2025-10-13 20:43:46 -0000 (Mon, 13 Oct 2025)
EndedAt: 2025-10-13 20:43:47 -0000 (Mon, 13 Oct 2025)
EllapsedTime: 1.2 seconds
RetCode: 1
Status:   ERROR  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R/bin/R CMD INSTALL trigger
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘trigger’ ...
** this is package ‘trigger’ version ‘1.54.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG   -I/usr/local/include    -fPIC  -g -O2  -Wall -Werror=format-security -c trigger.c -o trigger.o
trigger.c: In function ‘mergeorder’:
trigger.c:25:20: warning: variable ‘n3’ set but not used [-Wunused-but-set-variable]
   25 | int i1,i2,i3,n1,n2,n3;
      |                    ^~
trigger.c: In function ‘order_c’:
trigger.c:54:8: error: implicit declaration of function ‘Calloc’; did you mean ‘calloc’? [-Wimplicit-function-declaration]
   54 |    p = Calloc(*n, double*);
      |        ^~~~~~
      |        calloc
trigger.c:54:19: error: expected expression before ‘double’
   54 |    p = Calloc(*n, double*);
      |                   ^~~~~~
trigger.c:60:4: error: implicit declaration of function ‘Free’; did you mean ‘free’? [-Wimplicit-function-declaration]
   60 |    Free(p);
      |    ^~~~
      |    free
trigger.c: In function ‘sec_link_stat’:
trigger.c:89:18: error: expected expression before ‘int’
   89 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:90:18: error: expected expression before ‘double’
   90 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:91:18: error: expected expression before ‘double’
   91 | mc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:92:18: error: expected expression before ‘double’
   92 | xc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:93:18: error: expected expression before ‘double’
   93 | xx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:94:18: error: expected expression before ‘double’
   94 | cc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:81:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
   81 | int ntr, nct, i, j;
      |          ^~~
trigger.c: In function ‘sec_link_stat_x’:
trigger.c:160:18: error: expected expression before ‘int’
  160 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:161:18: error: expected expression before ‘double’
  161 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:162:18: error: expected expression before ‘double’
  162 | mc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:163:18: error: expected expression before ‘double’
  163 | xc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:164:18: error: expected expression before ‘double’
  164 | xx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:165:18: error: expected expression before ‘double’
  165 | cc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:153:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
  153 | int ntr, nct, i, j, k, nk;
      |          ^~~
trigger.c: In function ‘condi_indep_stat’:
trigger.c:244:18: error: expected expression before ‘int’
  244 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:245:18: error: expected expression before ‘double’
  245 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:246:18: error: expected expression before ‘double’
  246 | mc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:247:18: error: expected expression before ‘double’
  247 | xc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:248:18: error: expected expression before ‘double’
  248 | xx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:249:18: error: expected expression before ‘double’
  249 | cc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:233:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
  233 | int ntr, nct, i, j;
      |          ^~~
trigger.c: In function ‘condi_indep_stat_x’:
trigger.c:323:18: error: expected expression before ‘int’
  323 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:324:18: error: expected expression before ‘double’
  324 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:325:18: error: expected expression before ‘double’
  325 | mc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:326:18: error: expected expression before ‘double’
  326 | xc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:327:18: error: expected expression before ‘double’
  327 | xx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:328:18: error: expected expression before ‘double’
  328 | cc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:310:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
  310 | int ntr, nct, i, j, k, nk;
      |          ^~~
trigger.c: In function ‘condi_indep_stat_rx’:
trigger.c:406:18: error: expected expression before ‘int’
  406 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:407:18: error: expected expression before ‘double’
  407 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:408:18: error: expected expression before ‘double’
  408 | mc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:409:18: error: expected expression before ‘double’
  409 | xc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:410:18: error: expected expression before ‘double’
  410 | xx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:411:18: error: expected expression before ‘double’
  411 | cc = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:393:10: warning: variable ‘nct’ set but not used [-Wunused-but-set-variable]
  393 | int ntr, nct, i, j, k, nk;
      |          ^~~
trigger.c: In function ‘link_stat’:
trigger.c:483:18: error: expected expression before ‘int’
  483 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:484:18: error: expected expression before ‘double’
  484 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:485:18: error: expected expression before ‘double’
  485 | xs = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c: In function ‘link_stat_xx’:
trigger.c:548:18: error: expected expression before ‘int’
  548 | ll = Calloc(*ng, int);
      |                  ^~~
trigger.c:549:18: error: expected expression before ‘double’
  549 | mx = Calloc(*ng, double);
      |                  ^~~~~~
trigger.c:550:18: error: expected expression before ‘double’
  550 | xs = Calloc(*ng, double);
      |                  ^~~~~~
make: *** [/home/biocbuild/R/R/etc/Makeconf:201: trigger.o] Error 1
ERROR: compilation failed for package ‘trigger’
* removing ‘/home/biocbuild/R/R-devel_2025-02-19/site-library/trigger’