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This page was generated on 2024-10-24 11:04 -0400 (Thu, 24 Oct 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-10-21 r87258) -- "Unsuffered Consequences" 3656
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1687/2281HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
rDGIdb 1.31.1  (landing page)
Lars Bosshard
Snapshot Date: 2024-10-23 19:16 -0400 (Wed, 23 Oct 2024)
git_url: https://git.bioconductor.org/packages/rDGIdb
git_branch: devel
git_last_commit: 477185d
git_last_commit_date: 2024-06-20 08:37:29 -0400 (Thu, 20 Jun 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    ERROR  skipped

BUILD results for rDGIdb on nebbiolo1

To the developers/maintainers of the rDGIdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/rDGIdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: rDGIdb
Version: 1.31.1
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rDGIdb
StartedAt: 2024-10-24 05:23:34 -0400 (Thu, 24 Oct 2024)
EndedAt: 2024-10-24 05:23:57 -0400 (Thu, 24 Oct 2024)
EllapsedTime: 23.0 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data rDGIdb
###
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* checking for file ‘rDGIdb/DESCRIPTION’ ... OK
* preparing ‘rDGIdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘vignette.Rnw’ using knitr

Quitting from lines 62-63 [query-dgidb-first] (vignette.Rnw)
Error: processing vignette 'vignette.Rnw' failed with diagnostics:
Timeout was reached: [old.dgidb.org] SSL connection timeout
--- failed re-building ‘vignette.Rnw’

SUMMARY: processing the following file failed:
  ‘vignette.Rnw’

Error: Vignette re-building failed.
Execution halted