Multiple platform build/check report for BioC 3.21 - CHECK results for oligoClasses on nebbiolo1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4720
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4482
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4493
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4446
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for oligoClasses on nebbiolo1

To the developers/maintainers of the oligoClasses package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/oligoClasses.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: oligoClasses

Version: 1.69.0

Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:oligoClasses.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings oligoClasses_1.69.0.tar.gz

StartedAt: 2025-02-15 00:34:58 -0500 (Sat, 15 Feb 2025)

EndedAt: 2025-02-15 00:35:02 -0500 (Sat, 15 Feb 2025)

EllapsedTime: 4.0 seconds

RetCode: 1

Status: ERROR

CheckDir: oligoClasses.Rcheck

Warnings: NA

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD check --install=check:oligoClasses.install-out.txt --library=/home/biocbuild/bbs-3.21-bioc/R/site-library --timings oligoClasses_1.69.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.21-bioc/meat/oligoClasses.Rcheck’
* using R Under development (unstable) (2025-01-20 r87609)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
    GNU Fortran (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0
* running under: Ubuntu 24.04.2 LTS
* using session charset: UTF-8
* checking for file ‘oligoClasses/DESCRIPTION’ ... OK
* this is package ‘oligoClasses’ version ‘1.69.0’
* checking package namespace information ... OK
* checking package dependencies ... ERROR
Packages suggested but not available:
  'pd.genomewidesnp.6', 'pd.genomewidesnp.5', 'pd.mapping50k.hind240',
  'pd.mapping50k.xba240', 'pd.mapping250k.sty', 'pd.mapping250k.nsp',
  'VanillaICE', 'crlmm'

Packages which this enhances but not available for checking:
  'doMPI', 'doRedis'

The suggested packages are required for a complete check.
Checking can be attempted without them by setting the environment
variable _R_CHECK_FORCE_SUGGESTS_ to a false value.

See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
* DONE

Status: 1 ERROR
See
  ‘/home/biocbuild/bbs-3.21-bioc/meat/oligoClasses.Rcheck/00check.log’
for details.

CHECK results for oligoClasses on nebbiolo1

Summary

Command output

Installation output

Tests output

Example timings