Leo Lahti
| Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/netresponse |
| git_branch: RELEASE_3_21 |
| git_last_commit: 6b0d930 |
| git_last_commit_date: 2025-04-15 10:00:39 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1439/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| netresponse 1.68.0 (landing page) Leo Lahti
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | OK | ||||||||||
|
To the developers/maintainers of the netresponse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netresponse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: netresponse |
| Version: 1.68.0 |
| Command: /home/biocbuild/R/R/bin/R CMD INSTALL netresponse |
| StartedAt: 2025-10-13 20:26:47 -0000 (Mon, 13 Oct 2025) |
| EndedAt: 2025-10-13 20:27:03 -0000 (Mon, 13 Oct 2025) |
| EllapsedTime: 15.2 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD INSTALL netresponse
###
##############################################################################
##############################################################################
* installing to library ‘/home/biocbuild/R/R-devel_2025-02-19/site-library’
* installing *source* package ‘netresponse’ ...
** this is package ‘netresponse’ version ‘1.68.0’
** using staged installation
** libs
using C compiler: ‘aarch64-unknown-linux-gnu-gcc (GCC) 14.2.0’
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -I"/home/biocbuild/R/R/include" -DNDEBUG -I/usr/local/include -fPIC -g -O2 -Wall -Werror=format-security -c netresponse.c -o netresponse.o
netresponse.c: In function ‘mHPpost’:
netresponse.c:264:15: warning: unused variable ‘prior_fields’ [-Wunused-variable]
264 | const char *prior_fields[]={"Mumu","S2mu",
| ^~~~~~~~~~~~
netresponse.c: In function ‘mLogLambda’:
netresponse.c:713:3: warning: ‘Mumu’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:11: note: ‘Mumu’ was declared here
655 | double *Mumu, *S2mu, *Mubar, *Mutilde,
| ^~~~
netresponse.c:713:3: warning: ‘S2mu’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:18: note: ‘S2mu’ was declared here
655 | double *Mumu, *S2mu, *Mubar, *Mutilde,
| ^~~~
netresponse.c:713:3: warning: ‘Mubar’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:25: note: ‘Mubar’ was declared here
655 | double *Mumu, *S2mu, *Mubar, *Mutilde,
| ^~~~~
netresponse.c:713:3: warning: ‘Mutilde’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:655:33: note: ‘Mutilde’ was declared here
655 | double *Mumu, *S2mu, *Mubar, *Mutilde,
| ^~~~~~~
netresponse.c:713:3: warning: ‘AlphaKsi’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:6: note: ‘AlphaKsi’ was declared here
656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
| ^~~~~~~~
netresponse.c:713:3: warning: ‘BetaKsi’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:17: note: ‘BetaKsi’ was declared here
656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
| ^~~~~~~
netresponse.c:713:3: warning: ‘KsiAlpha’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:27: note: ‘KsiAlpha’ was declared here
656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
| ^~~~~~~~
netresponse.c:713:3: warning: ‘KsiBeta’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:38: note: ‘KsiBeta’ was declared here
656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
| ^~~~~~~
netresponse.c:713:3: warning: ‘U_p’ may be used uninitialized [-Wmaybe-uninitialized]
713 | vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
714 | AlphaKsi, BetaKsi, KsiAlpha, KsiBeta,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
715 | post_gamma, log_lambda, prior_alpha,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
716 | U_p, U_hat,
| ~~~~~~~~~~~
717 | datalen, dim1, dim2, data1, data2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
718 | Ns, ncentroids, implicitnoisevar);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netresponse.c:656:48: note: ‘U_p’ was declared here
656 | *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
| ^~~
/opt/ohpc/pub/compiler/gcc/14.2.0/bin/aarch64-unknown-linux-gnu-gcc -std=gnu23 -shared -L/home/biocbuild/R/R/lib -L/usr/local/lib -o netresponse.so netresponse.o -L/home/biocbuild/R/R/lib -lR
installing to /home/biocbuild/R/R-devel_2025-02-19/site-library/00LOCK-netresponse/00new/netresponse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (netresponse)