Till Soerensen
| Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: RELEASE_3_21 |
| git_last_commit: c20d14f |
| git_last_commit_date: 2025-04-15 10:48:52 -0400 (Tue, 15 Apr 2025) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-10-16 11:41 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1040/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.40.0 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.40.0 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-10-14 01:47:41 -0000 (Tue, 14 Oct 2025) |
| EndedAt: 2025-10-14 01:52:03 -0000 (Tue, 14 Oct 2025) |
| EllapsedTime: 262.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=130<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (15), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 1(N=98) has 3 sub-cluster at 3 (6), ICL=107<>30
split 1 into 3 clusters
cluster 2(N=205) has 3 sub-cluster at 4 (13), ICL=3.7<>30
cluster 1(N=98) has 3 sub-cluster at 3 (6), ICL=0<>30
Model Refinement takes 0.067 mins(max 1: 0.05)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 4(N=414) has 2 sub-cluster at 2 (6), ICL=36<>34
split 4 into 2 clusters
cluster 1(N=56) has 3 sub-cluster at 3 (26), ICL=27<>34
cluster 2(N=74) has 2 sub-cluster at 2 (69), ICL=21<>34
cluster 3(N=65) has 2 sub-cluster at 2 (12), ICL=13<>34
cluster 1(N=56) has 3 sub-cluster at 3 (26), ICL=0<>34
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 8 iterations
cluster 1(N=103) has 2 sub-cluster at 2 (18), ICL=59<>37
split 1 into 2 clusters
cluster 5(N=49) has 3 sub-cluster at 3 (18), ICL=36<>37
cluster 2(N=141) has 5 sub-cluster at 5 (23), ICL=20<>37
cluster 3(N=118) has 3 sub-cluster at 4 (45), ICL=11<>37
cluster 1(N=103) has 2 sub-cluster at 2 (18), ICL=0<>37
Model Refinement takes 0.12 mins(max 3: 0.033)
Fit Model 4 of (6/10) K=5->6 N=2420
EM 6 takes 0 mins, 8 iterations
cluster 4(N=234) has 2 sub-cluster at 2 (7), ICL=59<>41
split 4 into 2 clusters
cluster 6(N=103) has 2 sub-cluster at 2 (14), ICL=52<>41
split 6 into 2 clusters
cluster 3(N=281) has 2 sub-cluster at 2 (15), ICL=26<>41
cluster 1(N=79) has 2 sub-cluster at 2 (11), ICL=24<>41
cluster 2(N=150) has 6 sub-cluster at 6 (27), ICL=22<>41
cluster 1(N=79) has 2 sub-cluster at 2 (11), ICL=0<>41
Model Refinement takes 0.22 mins(max 5: 0.083)
Fit Model 5 of (6/10) K=6->8 N=4841
EM 8 takes 0 mins, 7 iterations
cluster 7(N=187) has 2 sub-cluster at 2 (6), ICL=62<>45
split 7 into 2 clusters
cluster 3(N=552) has 2 sub-cluster at 2 (6), ICL=37<>45
cluster 2(N=264) has 3 sub-cluster at 3 (26), ICL=33<>45
cluster 5(N=31) has 2 sub-cluster at 2 (100), ICL=32<>45
cluster 1(N=196) has 2 sub-cluster at 2 (6), ICL=28<>45
cluster 4(N=464) has 2 sub-cluster at 2 (35), ICL=23<>45
cluster 8(N=69) has 3 sub-cluster at 3 (18), ICL=21<>45
cluster 1(N=196) has 2 sub-cluster at 2 (6), ICL=0<>45
Model Refinement takes 0.23 mins(max 6: 0.083)
Fit Model 6 of (6/10) K=8->9 N=9682
EM 9 takes 0 mins, 8 iterations
cluster 2(N=556) has 3 sub-cluster at 3 (11), ICL=65<>48
split 2 into 3 clusters
cluster 9(N=153) has 4 sub-cluster at 4 (17), ICL=42<>48
cluster 3(N=1121) has 2 sub-cluster at 2 (5), ICL=38<>48
cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=38<>48
cluster 5(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 4(N=908) has 3 sub-cluster at 3 (12), ICL=29<>48
cluster 7(N=315) has 2 sub-cluster at 2 (9), ICL=7.3<>48
cluster 8(N=75) has 4 sub-cluster at 5 (52), ICL=0.99<>48
cluster 1(N=392) has 3 sub-cluster at 3 (34), ICL=0<>48
Model Refinement takes 0.32 mins(max 6: 0.1)
Fit Model 7 of (6/10) K=9->11 N=9682
EM 11 takes 0 mins, 4 iterations
cluster 6(N=898) has 2 sub-cluster at 2 (34), ICL=54<>48
split 6 into 2 clusters
cluster 11(N=154) has 4 sub-cluster at 4 (16), ICL=43<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 7(N=60) has 2 sub-cluster at 2 (9), ICL=30<>48
cluster 5(N=1121) has 2 sub-cluster at 2 (12), ICL=26<>48
cluster 10(N=74) has 5 sub-cluster at 6 (66), ICL=19<>48
cluster 4(N=86) has 2 sub-cluster at 2 (12), ICL=18<>48
cluster 2(N=362) has 6 sub-cluster at 7 (24), ICL=14<>48
cluster 3(N=181) has 3 sub-cluster at 4 (36), ICL=9.4<>48
cluster 9(N=308) has 2 sub-cluster at 2 (8), ICL=7.1<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.37 mins(max 8: 0.1)
Fit Model 8 of (6/10) K=11->12 N=9682
EM 12 takes 0.017 mins, 3 iterations
cluster 12(N=156) has 4 sub-cluster at 4 (16), ICL=43<>48
cluster 5(N=1121) has 2 sub-cluster at 2 (6), ICL=37<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=37<>48
cluster 8(N=61) has 2 sub-cluster at 2 (9), ICL=31<>48
cluster 4(N=86) has 2 sub-cluster at 2 (6), ICL=18<>48
cluster 11(N=74) has 3 sub-cluster at 4 (45), ICL=13<>48
cluster 2(N=362) has 2 sub-cluster at 2 (5), ICL=12<>48
cluster 10(N=308) has 2 sub-cluster at 2 (8), ICL=7.1<>48
cluster 3(N=174) has 6 sub-cluster at 7 (37), ICL=6<>48
cluster 1(N=391) has 2 sub-cluster at 2 (8), ICL=0<>48
Model Refinement takes 0.38 mins(max 9: 0.1)
Fit Model 9 of (6/10) K=12->12 N=9682
EM 12 takes 0 mins, 3 iterations
Process completed at9
Major Iteration (Trans) (6/4) takes 1.9 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=146<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (12), ICL=0<>22
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 8 iterations
cluster 2(N=70) has 3 sub-cluster at 3 (6), ICL=86<>25
split 2 into 3 clusters
cluster 1(N=232) has 3 sub-cluster at 3 (6), ICL=57<>25
split 1 into 3 clusters
cluster 1(N=232) has 3 sub-cluster at 3 (6), ICL=0<>25
Model Refinement takes 0.05 mins(max 1: 0.033)
Fit Model 2 of (6/10) K=2->6 N=605
EM 6 takes 0 mins, 14 iterations
cluster 2(N=8) has 2 sub-cluster at 2 (100), ICL=78<>28
split 2 into 2 clusters
cluster 6(N=31) has 2 sub-cluster at 2 (6), ICL=17<>28
cluster 4(N=55) has 5 sub-cluster at 5 (13), ICL=16<>28
cluster 5(N=67) has 3 sub-cluster at 4 (15), ICL=13<>28
cluster 3(N=42) has 3 sub-cluster at 3 (11), ICL=13<>28
cluster 1(N=402) has 4 sub-cluster at 4 (91), ICL=10<>28
cluster 1(N=402) has 4 sub-cluster at 4 (91), ICL=0<>28
Model Refinement takes 0.083 mins(max 1: 0.017)
Fit Model 3 of (6/10) K=6->7 N=1210
EM 6 takes 0 mins, 7 iterations
cluster 1(N=827) has 2 sub-cluster at 2 (5), ICL=103<>31
split 1 into 2 clusters
cluster 6(N=47) has 3 sub-cluster at 3 (17), ICL=19<>31
cluster 5(N=160) has 8 sub-cluster at 8 (33), ICL=19<>31
cluster 3(N=59) has 3 sub-cluster at 3 (23), ICL=18<>31
cluster 4(N=106) has 5 sub-cluster at 5 (22), ICL=14<>31
cluster 1(N=827) has 2 sub-cluster at 2 (5), ICL=0<>31
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=6->7 N=2420
EM 7 takes 0 mins, 9 iterations
cluster 2(N=102) has 2 sub-cluster at 2 (17), ICL=56<>34
split 2 into 2 clusters
cluster 3(N=34) has 2 sub-cluster at 2 (5), ICL=39<>34
split 3 into 2 clusters
cluster 7(N=100) has 2 sub-cluster at 2 (12), ICL=25<>34
cluster 4(N=152) has 7 sub-cluster at 7 (27), ICL=23<>34
cluster 6(N=271) has 2 sub-cluster at 2 (6), ICL=18<>34
cluster 5(N=252) has 5 sub-cluster at 5 (17), ICL=14<>34
cluster 2(N=102) has 2 sub-cluster at 2 (17), ICL=0<>34
Model Refinement takes 0.2 mins(max 1: 0.083)
Fit Model 5 of (6/10) K=7->9 N=4841
EM 9 takes 0.017 mins, 7 iterations
cluster 6(N=283) has 3 sub-cluster at 3 (14), ICL=36<>37
cluster 2(N=68) has 4 sub-cluster at 4 (39), ICL=31<>37
cluster 9(N=198) has 4 sub-cluster at 4 (22), ICL=27<>37
cluster 8(N=564) has 2 sub-cluster at 2 (5), ICL=24<>37
cluster 3(N=144) has 5 sub-cluster at 6 (34), ICL=18<>37
cluster 7(N=434) has 2 sub-cluster at 2 (11), ICL=16<>37
cluster 5(N=23) has 2 sub-cluster at 2 (5), ICL=14<>37
cluster 4(N=35) has 2 sub-cluster at 3 (17), ICL=14<>37
cluster 2(N=68) has 4 sub-cluster at 4 (39), ICL=0<>37
Model Refinement takes 0.25 mins(max 1: 0.083)
Fit Model 6 of (6/10) K=9->9 N=9682
EM 9 takes 0.017 mins, 6 iterations
cluster 6(N=557) has 3 sub-cluster at 3 (11), ICL=69<>40
split 6 into 3 clusters
cluster 7(N=916) has 3 sub-cluster at 3 (10), ICL=56<>40
split 7 into 3 clusters
cluster 8(N=1122) has 2 sub-cluster at 2 (8), ICL=54<>40
split 8 into 2 clusters
cluster 2(N=153) has 4 sub-cluster at 4 (10), ICL=43<>40
split 2 into 4 clusters
cluster 9(N=392) has 3 sub-cluster at 3 (34), ICL=41<>40
split 9 into 3 clusters
cluster 3(N=314) has 2 sub-cluster at 2 (6), ICL=8.1<>40
cluster 4(N=75) has 2 sub-cluster at 3 (7), ICL=1.9<>40
cluster 2(N=153) has 4 sub-cluster at 4 (10), ICL=0<>40
Model Refinement takes 0.32 mins(max 1: 0.1)
Fit Model 7 of (6/10) K=9->19 N=9682
EM 19 takes 0.017 mins, 4 iterations
cluster 3(N=22) has 2 sub-cluster at 2 (9), ICL=20<>40
cluster 11(N=78) has 2 sub-cluster at 2 (17), ICL=20<>40
cluster 5(N=25) has 2 sub-cluster at 2 (23), ICL=18<>40
cluster 2(N=87) has 2 sub-cluster at 2 (30), ICL=16<>40
cluster 19(N=133) has 5 sub-cluster at 5 (38), ICL=14<>40
cluster 9(N=358) has 4 sub-cluster at 4 (14), ICL=13<>40
cluster 10(N=181) has 6 sub-cluster at 8 (26), ICL=11<>40
cluster 4(N=23) has 2 sub-cluster at 2 (5), ICL=10<>40
cluster 17(N=229) has 5 sub-cluster at 6 (30), ICL=9.8<>40
cluster 18(N=119) has 4 sub-cluster at 4 (19), ICL=9.1<>40
cluster 14(N=50) has 2 sub-cluster at 2 (100), ICL=6.9<>40
cluster 6(N=308) has 7 sub-cluster at 8 (44), ICL=5<>40
cluster 16(N=396) has 7 sub-cluster at 8 (43), ICL=1.8<>40
cluster 12(N=384) has 7 sub-cluster at 7 (28), ICL=0.36<>40
cluster 2(N=87) has 2 sub-cluster at 2 (30), ICL=0<>40
Model Refinement takes 0.43 mins(max 1: 0.1)
Fit Model 8 of (6/10) K=19->19 N=9682
EM 19 takes 0 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.6 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted