Till Soerensen
| Snapshot Date: 2025-01-28 13:40 -0500 (Tue, 28 Jan 2025) |
| git_url: https://git.bioconductor.org/packages/immunoClust |
| git_branch: devel |
| git_last_commit: 17b4bb8 |
| git_last_commit_date: 2024-11-25 08:59:04 -0500 (Mon, 25 Nov 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-01-29 11:47 -0500 (Wed, 29 Jan 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4661 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" | 4457 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" | 4468 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" | 4421 |
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-11-24 r87369) -- "Unsuffered Consequences" | 4411 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1018/2286 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| immunoClust 1.39.3 (landing page) Till Soerensen
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the immunoClust package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/immunoClust.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. - See Martin Grigorov's blog post for how to debug Linux ARM64 related issues on a x86_64 host. |
| Package: immunoClust |
| Version: 1.39.3 |
| Command: /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust |
| StartedAt: 2025-01-28 23:43:27 -0000 (Tue, 28 Jan 2025) |
| EndedAt: 2025-01-28 23:47:29 -0000 (Tue, 28 Jan 2025) |
| EllapsedTime: 241.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
##############################################################################
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###
### Running command:
###
### /home/biocbuild/R/R/bin/R CMD build --keep-empty-dirs --no-resave-data immunoClust
###
##############################################################################
##############################################################################
* checking for file ‘immunoClust/DESCRIPTION’ ... OK
* preparing ‘immunoClust’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘immunoClust.Rnw’ using Sweave
Loading required package: flowCore
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=138<>26
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (13), ICL=0<>26
Model Refinement takes 0.033 mins(max 1: 0.033)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 7 iterations
cluster 1(N=98) has 3 sub-cluster at 3 (8), ICL=116<>30
split 1 into 3 clusters
cluster 2(N=204) has 2 sub-cluster at 2 (5), ICL=27<>30
cluster 1(N=98) has 3 sub-cluster at 3 (8), ICL=0<>30
Model Refinement takes 0.05 mins(max 2: 0.033)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 8 iterations
cluster 1(N=60) has 5 sub-cluster at 5 (10), ICL=33<>34
cluster 3(N=65) has 5 sub-cluster at 6 (43), ICL=29<>34
cluster 4(N=411) has 3 sub-cluster at 3 (7), ICL=17<>34
cluster 2(N=71) has 2 sub-cluster at 2 (22), ICL=15<>34
cluster 1(N=60) has 5 sub-cluster at 5 (10), ICL=0<>34
Model Refinement takes 0.13 mins(max 2: 0.05)
Fit Model 3 of (6/10) K=4->4 N=1210
EM 4 takes 0 mins, 6 iterations
cluster 4(N=846) has 2 sub-cluster at 2 (16), ICL=117<>37
split 4 into 2 clusters
cluster 1(N=109) has 3 sub-cluster at 3 (18), ICL=47<>37
split 1 into 3 clusters
cluster 2(N=139) has 8 sub-cluster at 8 (39), ICL=20<>37
cluster 3(N=122) has 2 sub-cluster at 2 (8), ICL=12<>37
cluster 1(N=109) has 3 sub-cluster at 3 (18), ICL=0<>37
Model Refinement takes 0.1 mins(max 4: 0.05)
Fit Model 4 of (6/10) K=4->7 N=2420
EM 7 takes 0 mins, 7 iterations
cluster 7(N=108) has 2 sub-cluster at 2 (6), ICL=52<>41
split 7 into 2 clusters
cluster 5(N=254) has 2 sub-cluster at 2 (9), ICL=40<>41
cluster 4(N=246) has 2 sub-cluster at 2 (7), ICL=27<>41
cluster 3(N=98) has 2 sub-cluster at 2 (18), ICL=20<>41
cluster 1(N=96) has 5 sub-cluster at 5 (23), ICL=17<>41
cluster 2(N=38) has 2 sub-cluster at 2 (25), ICL=9.8<>41
cluster 1(N=96) has 5 sub-cluster at 5 (23), ICL=0<>41
Model Refinement takes 0.22 mins(max 6: 0.083)
Fit Model 5 of (6/10) K=7->8 N=4841
EM 8 takes 0 mins, 7 iterations
cluster 5(N=484) has 2 sub-cluster at 2 (6), ICL=84<>45
split 5 into 2 clusters
cluster 7(N=103) has 2 sub-cluster at 2 (6), ICL=65<>45
split 7 into 2 clusters
cluster 4(N=573) has 2 sub-cluster at 2 (6), ICL=31<>45
cluster 3(N=209) has 2 sub-cluster at 2 (23), ICL=22<>45
cluster 1(N=208) has 2 sub-cluster at 2 (14), ICL=19<>45
cluster 2(N=83) has 5 sub-cluster at 5 (71), ICL=15<>45
cluster 8(N=157) has 7 sub-cluster at 8 (27), ICL=13<>45
cluster 1(N=208) has 2 sub-cluster at 2 (14), ICL=0<>45
Model Refinement takes 0.27 mins(max 6: 0.1)
Fit Model 6 of (6/10) K=8->10 N=9682
EM 10 takes 0 mins, 6 iterations
cluster 6(N=60) has 3 sub-cluster at 3 (19), ICL=53<>48
split 6 into 3 clusters
cluster 4(N=1121) has 2 sub-cluster at 2 (9), ICL=48<>48
split 4 into 2 clusters
cluster 8(N=153) has 4 sub-cluster at 4 (17), ICL=42<>48
cluster 3(N=392) has 3 sub-cluster at 3 (33), ICL=38<>48
cluster 1(N=432) has 3 sub-cluster at 3 (17), ICL=32<>48
cluster 5(N=908) has 3 sub-cluster at 3 (12), ICL=30<>48
cluster 9(N=76) has 4 sub-cluster at 5 (15), ICL=11<>48
cluster 2(N=175) has 4 sub-cluster at 6 (34), ICL=8.7<>48
cluster 10(N=315) has 5 sub-cluster at 7 (51), ICL=1.9<>48
cluster 1(N=432) has 3 sub-cluster at 3 (17), ICL=0<>48
Model Refinement takes 0.35 mins(max 7: 0.083)
Fit Model 7 of (6/10) K=10->13 N=9682
EM 12 takes 0.017 mins, 7 iterations
cluster 3(N=392) has 2 sub-cluster at 2 (13), ICL=41<>48
cluster 1(N=432) has 2 sub-cluster at 2 (6), ICL=27<>48
cluster 6(N=906) has 3 sub-cluster at 3 (11), ICL=26<>48
cluster 10(N=122) has 3 sub-cluster at 3 (28), ICL=26<>48
cluster 5(N=425) has 2 sub-cluster at 2 (6), ICL=19<>48
cluster 7(N=43) has 4 sub-cluster at 4 (14), ICL=17<>48
cluster 11(N=76) has 4 sub-cluster at 5 (15), ICL=11<>48
cluster 2(N=176) has 5 sub-cluster at 6 (30), ICL=7.4<>48
cluster 12(N=314) has 2 sub-cluster at 2 (7), ICL=6<>48
cluster 1(N=432) has 2 sub-cluster at 2 (6), ICL=0<>48
Model Refinement takes 0.35 mins(max 9: 0.083)
Fit Model 8 of (6/10) K=12->12 N=9682
EM 12 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.6 mins
filtered from above:318
filtered from below:0
cluster 1(N=151) has 2 sub-cluster at 2 (5), ICL=106<>22
split 1 into 2 clusters
cluster 1(N=151) has 2 sub-cluster at 2 (5), ICL=0<>22
Model Refinement takes 0.017 mins(max 1: 0.017)
Fit Model 1 of (6/10) K=1->2 N=302
EM 2 takes 0 mins, 14 iterations
cluster 1(N=79) has 3 sub-cluster at 3 (5), ICL=77<>25
split 1 into 3 clusters
cluster 2(N=223) has 2 sub-cluster at 2 (59), ICL=14<>25
cluster 1(N=79) has 3 sub-cluster at 3 (5), ICL=0<>25
Model Refinement takes 0.033 mins(max 1: 0.017)
Fit Model 2 of (6/10) K=2->4 N=605
EM 4 takes 0 mins, 9 iterations
cluster 4(N=431) has 2 sub-cluster at 2 (5), ICL=37<>28
split 4 into 2 clusters
cluster 1(N=58) has 4 sub-cluster at 4 (11), ICL=27<>28
cluster 2(N=64) has 4 sub-cluster at 4 (14), ICL=18<>28
cluster 3(N=54) has 3 sub-cluster at 3 (17), ICL=3.9<>28
cluster 1(N=58) has 4 sub-cluster at 4 (11), ICL=0<>28
Model Refinement takes 0.067 mins(max 4: 0.033)
Fit Model 3 of (6/10) K=4->5 N=1210
EM 5 takes 0 mins, 7 iterations
cluster 1(N=107) has 3 sub-cluster at 3 (8), ICL=50<>31
split 1 into 3 clusters
cluster 5(N=68) has 3 sub-cluster at 3 (6), ICL=39<>31
split 5 into 3 clusters
cluster 3(N=125) has 2 sub-cluster at 2 (6), ICL=32<>31
split 3 into 2 clusters
cluster 2(N=144) has 8 sub-cluster at 8 (29), ICL=17<>31
cluster 1(N=107) has 3 sub-cluster at 3 (8), ICL=0<>31
Model Refinement takes 0.12 mins(max 1: 0.033)
Fit Model 4 of (6/10) K=5->10 N=2420
EM 10 takes 0.017 mins, 21 iterations
cluster 6(N=12) has 2 sub-cluster at 2 (100), ICL=48<>34
split 6 into 2 clusters
cluster 1(N=114) has 8 sub-cluster at 8 (26), ICL=23<>34
cluster 4(N=278) has 3 sub-cluster at 3 (12), ICL=19<>34
cluster 9(N=83) has 6 sub-cluster at 7 (29), ICL=18<>34
cluster 5(N=229) has 7 sub-cluster at 7 (19), ICL=13<>34
cluster 3(N=31) has 2 sub-cluster at 2 (7), ICL=13<>34
cluster 2(N=69) has 4 sub-cluster at 4 (19), ICL=12<>34
cluster 8(N=38) has 2 sub-cluster at 2 (9), ICL=12<>34
cluster 10(N=20) has 2 sub-cluster at 2 (6), ICL=6.8<>34
cluster 1(N=114) has 8 sub-cluster at 8 (26), ICL=0<>34
Model Refinement takes 0.22 mins(max 7: 0.083)
Fit Model 5 of (6/10) K=10->11 N=4841
EM 10 takes 0.017 mins, 8 iterations
cluster 1(N=261) has 2 sub-cluster at 2 (11), ICL=35<>37
cluster 8(N=82) has 2 sub-cluster at 2 (13), ICL=32<>37
cluster 3(N=56) has 3 sub-cluster at 3 (22), ICL=23<>37
cluster 6(N=33) has 2 sub-cluster at 2 (13), ICL=20<>37
cluster 2(N=160) has 4 sub-cluster at 4 (41), ICL=15<>37
cluster 10(N=39) has 4 sub-cluster at 5 (7), ICL=14<>37
cluster 4(N=553) has 8 sub-cluster at 8 (23), ICL=12<>37
cluster 5(N=483) has 4 sub-cluster at 4 (16), ICL=12<>37
cluster 9(N=159) has 8 sub-cluster at 8 (20), ICL=12<>37
cluster 1(N=261) has 2 sub-cluster at 2 (11), ICL=0<>37
Model Refinement takes 0.28 mins(max 7: 0.1)
Fit Model 6 of (6/10) K=10->10 N=9682
EM 10 takes 0.017 mins, 5 iterations
cluster 1(N=524) has 2 sub-cluster at 2 (10), ICL=52<>40
split 1 into 2 clusters
cluster 8(N=156) has 4 sub-cluster at 4 (18), ICL=49<>40
split 8 into 4 clusters
cluster 4(N=1119) has 2 sub-cluster at 2 (5), ICL=40<>40
split 4 into 2 clusters
cluster 3(N=120) has 2 sub-cluster at 2 (6), ICL=33<>40
cluster 6(N=60) has 2 sub-cluster at 2 (9), ICL=32<>40
cluster 5(N=909) has 3 sub-cluster at 3 (7), ICL=30<>40
cluster 2(N=352) has 7 sub-cluster at 8 (39), ICL=20<>40
cluster 10(N=74) has 3 sub-cluster at 4 (47), ICL=16<>40
cluster 9(N=313) has 7 sub-cluster at 8 (34), ICL=5.2<>40
cluster 1(N=524) has 2 sub-cluster at 2 (10), ICL=0<>40
Model Refinement takes 0.32 mins(max 7: 0.083)
Fit Model 7 of (6/10) K=10->15 N=9682
EM 15 takes 0.017 mins, 7 iterations
cluster 7(N=908) has 3 sub-cluster at 3 (12), ICL=35<>40
cluster 4(N=117) has 2 sub-cluster at 2 (6), ICL=34<>40
cluster 8(N=60) has 2 sub-cluster at 2 (12), ICL=33<>40
cluster 2(N=410) has 4 sub-cluster at 4 (14), ICL=19<>40
cluster 11(N=13) has 2 sub-cluster at 2 (100), ICL=18<>40
cluster 10(N=93) has 3 sub-cluster at 3 (15), ICL=17<>40
cluster 3(N=354) has 8 sub-cluster at 8 (44), ICL=16<>40
cluster 15(N=74) has 3 sub-cluster at 4 (45), ICL=16<>40
cluster 1(N=169) has 7 sub-cluster at 7 (19), ICL=11<>40
cluster 12(N=52) has 2 sub-cluster at 2 (8), ICL=7.6<>40
cluster 14(N=313) has 6 sub-cluster at 7 (39), ICL=6.4<>40
cluster 1(N=169) has 7 sub-cluster at 7 (19), ICL=0<>40
Model Refinement takes 0.38 mins(max 9: 0.083)
Fit Model 8 of (6/10) K=15->15 N=9682
EM 15 takes 0.017 mins, 3 iterations
Process completed at8
Major Iteration (Trans) (6/4) takes 1.5 mins
Fit Model 1 of 10 with 8 clusters
=> results in 8 clusters
Fit Model 2 of 10 with 21 clusters
=> results in 13 clusters
Fit Model 3 of 10 with 23 clusters
=> results in 19 clusters
Fit Model 4 of 10 with 26 clusters
=> results in 21 clusters
Fit Model 5 of 10 with 25 clusters
=> results in 21 clusters
Error: processing vignette 'immunoClust.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'immunoClust.tex' failed.
LaTeX errors:
! LaTeX Error: File `inputenx.sty' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: sty)
! Emergency stop.
<read *>
l.15 ^^M
! ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘immunoClust.Rnw’
SUMMARY: processing the following file failed:
‘immunoClust.Rnw’
Error: Vignette re-building failed.
Execution halted