| Back to Multiple platform build/check report for BioC 3.21: simplified long |
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This page was generated on 2025-09-15 11:39 -0400 (Mon, 15 Sep 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4826 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4606 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4547 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 763/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| flowWorkspace 4.20.0 (landing page) Greg Finak
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the flowWorkspace package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowWorkspace.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: flowWorkspace |
| Version: 4.20.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowWorkspace |
| StartedAt: 2025-09-12 00:28:00 -0400 (Fri, 12 Sep 2025) |
| EndedAt: 2025-09-12 00:30:13 -0400 (Fri, 12 Sep 2025) |
| EllapsedTime: 133.8 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowWorkspace
###
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* checking for file ‘flowWorkspace/DESCRIPTION’ ... OK
* preparing ‘flowWorkspace’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowToMergeGatingSet.Rmd’ using rmarkdown
2025-09-12 00:30:07.322 R[81457:367456969] XType: Using static font registry.
--- finished re-building ‘HowToMergeGatingSet.Rmd’
--- re-building ‘flowWorkspace-Introduction.Rmd’ using rmarkdown
Quitting from flowWorkspace-Introduction.Rmd:90-93 [autoplot-nodeName]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `add_ggcyto()`:
! object '+.gg' not found
---
Backtrace:
▆
1. ├─ggplot2::autoplot(gs, node)
2. └─ggcyto:::autoplot.GatingSet(gs, node)
3. ├─ggcyto::ggcyto(object, mapping, ...)
4. └─ggcyto:::ggcyto.GatingSet(object, mapping, ...)
5. └─ggcyto:::ggcyto.flowSet(data = data, mapping = mapping, ...)
6. ├─p + ggcyto_par_default()
7. └─p + ggcyto_par_default()
8. └─ggcyto:::add_ggcyto(e1, e2, e2name)
9. ├─e1 + e2.new
10. └─e1 + e2.new
11. └─ggcyto:::add_ggcyto(e1, e2, e2name)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'flowWorkspace-Introduction.Rmd' failed with diagnostics:
object '+.gg' not found
--- failed re-building ‘flowWorkspace-Introduction.Rmd’
SUMMARY: processing the following file failed:
‘flowWorkspace-Introduction.Rmd’
Error: Vignette re-building failed.
Execution halted