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This page was generated on 2025-04-22 13:17 -0400 (Tue, 22 Apr 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4831
palomino7Windows Server 2022 Datacenterx644.5.0 RC (2025-04-04 r88126 ucrt) -- "How About a Twenty-Six" 4573
lconwaymacOS 12.7.1 Montereyx86_644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4599
kjohnson3macOS 13.7.1 Venturaarm644.5.0 RC (2025-04-04 r88126) -- "How About a Twenty-Six" 4553
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4570
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 743/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowCore 2.20.0  (landing page)
Mike Jiang
Snapshot Date: 2025-04-21 13:40 -0400 (Mon, 21 Apr 2025)
git_url: https://git.bioconductor.org/packages/flowCore
git_branch: RELEASE_3_21
git_last_commit: c75a5ca
git_last_commit_date: 2025-04-15 09:39:15 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  YES
palomino7Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  YES
lconwaymacOS 12.7.1 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson3macOS 13.7.1 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

BUILD results for flowCore on kjohnson3

To the developers/maintainers of the flowCore package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowCore.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: flowCore
Version: 2.20.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
StartedAt: 2025-04-21 16:21:31 -0400 (Mon, 21 Apr 2025)
EndedAt: 2025-04-21 16:21:57 -0400 (Mon, 21 Apr 2025)
EllapsedTime: 25.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data flowCore
###
##############################################################################
##############################################################################


* checking for file ‘flowCore/DESCRIPTION’ ... OK
* preparing ‘flowCore’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘HowTo-flowCore.Rnw’ using knitr

Quitting from HowTo-flowCore.Rnw:1195-1197 [plotALL-openCyto]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `which()`:
! argument to 'which' is not logical
---
Backtrace:
    x
 1. +-ggplot2::autoplot(gs[[1]])
 2. \-ggcyto:::autoplot.GatingHierarchy(gs[[1]])
 3.   \-flowWorkspace:::.mergeGates(object, gate, bool, merge, projections = projections)
 4.     \-base::which(boolInd)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'HowTo-flowCore.Rnw' failed with diagnostics:
argument to 'which' is not logical
--- failed re-building ‘HowTo-flowCore.Rnw’

SUMMARY: processing the following file failed:
  ‘HowTo-flowCore.Rnw’

Error: Vignette re-building failed.
Execution halted