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This page was generated on 2025-10-16 11:40 -0400 (Thu, 16 Oct 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | 4.5.1 (2025-06-13) -- "Great Square Root" | 4833 |
| merida1 | macOS 12.7.6 Monterey | x86_64 | 4.5.1 RC (2025-06-05 r88288) -- "Great Square Root" | 4614 |
| kjohnson1 | macOS 13.7.5 Ventura | arm64 | 4.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" | 4555 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4586 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 355/2341 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
Aaron Taudt
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| merida1 | macOS 12.7.6 Monterey / x86_64 | ERROR | ERROR | skipped | skipped | |||||||||
| kjohnson1 | macOS 13.7.5 Ventura / arm64 | ERROR | ERROR | skipped | skipped | |||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | ERROR | ERROR | skipped | ||||||||||
|
To the developers/maintainers of the chromstaR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: chromstaR |
| Version: 1.34.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chromstaR |
| StartedAt: 2025-10-13 16:51:31 -0400 (Mon, 13 Oct 2025) |
| EndedAt: 2025-10-13 16:51:33 -0400 (Mon, 13 Oct 2025) |
| EllapsedTime: 2.3 seconds |
| RetCode: 1 |
| Status: ERROR |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL chromstaR
###
##############################################################################
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* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library’
* installing *source* package ‘chromstaR’ ...
** this is package ‘chromstaR’ version ‘1.34.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 15.0.0 (clang-1500.0.40.1)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c R_interface.cpp -o R_interface.o
clang++ -arch arm64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c densities.cpp -o densities.o
densities.cpp:25:58: error: expected '(' for function-style cast or type construction
this->lxfactorials = (double*) Calloc(max_obs+1, double);
~~~~~~^
densities.cpp:40:3: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(this->lxfactorials);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
densities.cpp:347:58: error: expected '(' for function-style cast or type construction
this->lxfactorials = (double*) Calloc(max_obs+1, double);
~~~~~~^
densities.cpp:362:3: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(this->lxfactorials);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
densities.cpp:881:49: error: expected '(' for function-style cast or type construction
double* z = (double*) Calloc(this->Nmod, double);
~~~~~~^
densities.cpp:976:2: error: use of undeclared identifier 'Free'; did you mean 'free'?
Free(z);
^~~~
free
/Library/Developer/CommandLineTools/SDKs/MacOSX11.sdk/usr/include/malloc/_malloc.h:42:7: note: 'free' declared here
void free(void *);
^
6 errors generated.
make: *** [densities.o] Error 1
ERROR: compilation failed for package ‘chromstaR’
* removing ‘/Library/Frameworks/R.framework/Versions/4.5-arm64/Resources/library/chromstaR’