Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on palomino7

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4719
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4481
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4492
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4445
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on palomino7

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-02-12 23:12:48 -0500 (Wed, 12 Feb 2025)

EndedAt: 2025-02-12 23:17:04 -0500 (Wed, 12 Feb 2025)

EllapsedTime: 255.9 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck'
* using R Under development (unstable) (2025-01-21 r87610 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.3.0
    GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.13.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'E:/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** this is package 'biodbHmdb' version '1.13.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.3.0'
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG  -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"      -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign   -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-02-12 23:14:08.823][biodb::testContext]
biodb.INFO [2025-02-12 23:14:08.826][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:14:08.828][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-02-12 23:14:08.829][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:14:08.830][biodb::testContext]
biodb.INFO [2025-02-12 23:14:08.832][biodb::testThat]
biodb.INFO [2025-02-12 23:14:08.833][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-02-12 23:14:08.834][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:08.835][biodb::testThat]
biodb.INFO [2025-02-12 23:14:08.988][biodb::testContext]
biodb.INFO [2025-02-12 23:14:08.989][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:14:08.990][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-02-12 23:14:08.991][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:14:08.993][biodb::testContext]
biodb.INFO [2025-02-12 23:14:09.002][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-12 23:14:09.005][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-12 23:14:09.012][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:14:09.013][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-12 23:14:09.015][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-12 23:14:09.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.019][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-12 23:14:09.042][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-12 23:14:09.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.047][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-12 23:14:09.048][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-12 23:14:09.049][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.052][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-12 23:14:09.053][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-12 23:14:09.055][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-12 23:14:09.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.059][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-12 23:14:09.060][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-12 23:14:09.061][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-12 23:14:09.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.065][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-12 23:14:09.067][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-12 23:14:09.068][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.071][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-12 23:14:09.072][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-12 23:14:09.073][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-12 23:14:09.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.078][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-12 23:14:09.079][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-12 23:14:09.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.086][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-12 23:14:09.087][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-12 23:14:09.088][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-12 23:14:09.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.093][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-12 23:14:09.094][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-12 23:14:09.095][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-12 23:14:09.096][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-12 23:14:09.097][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-12 23:14:09.098][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-12 23:14:09.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.103][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-12 23:14:09.104][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-12 23:14:09.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.108][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-12 23:14:09.110][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-12 23:14:09.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.114][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-12 23:14:09.115][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-12 23:14:09.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.118][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.119][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-12 23:14:09.121][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-12 23:14:09.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.125][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-12 23:14:09.126][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-12 23:14:09.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.130][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-12 23:14:09.132][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-12 23:14:09.135][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-12 23:14:09.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.139][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-12 23:14:09.140][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-12 23:14:09.142][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-12 23:14:09.143][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.148][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-12 23:14:09.176][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.189][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-12 23:14:09.190][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.192][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:14:09.193][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.194][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.195][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.197][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.198][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-12 23:14:09.199][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:14:09.200][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.201][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-12 23:14:09.203][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:14:09.204][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.205][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.206][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:14:09.206][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-12 23:14:09.206][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-12 23:14:09.206][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-12 23:14:09.206][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-12 23:14:09.207][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:14:09.209][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.210][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.211][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:14:09.212][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.213][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.214][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.215][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.216][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:14:09.218][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:14:09.219][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.220][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.221][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-12 23:14:09.223][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.224][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-12 23:14:09.225][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.227][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:14:09.228][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.229][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.236][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.237][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.238][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-12 23:14:09.239][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:14:09.241][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.242][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-12 23:14:09.243][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:14:09.244][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.245][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.247][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:14:09.247][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-12 23:14:09.247][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-12 23:14:09.247][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-12 23:14:09.247][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-12 23:14:09.248][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:14:09.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.251][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:14:09.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.255][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.256][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.257][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:14:09.258][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:14:09.259][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.261][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.262][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-12 23:14:09.264][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.266][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-12 23:14:09.267][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.269][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:14:09.271][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.272][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.274][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.276][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.277][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-12 23:14:09.279][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:14:09.281][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.283][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-12 23:14:09.284][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:14:09.285][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.287][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.288][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.289][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:14:09.290][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.291][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.292][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:14:09.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.296][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.297][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.298][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:14:09.299][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:14:09.300][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.301][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.303][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-12 23:14:09.305][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.306][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-12 23:14:09.307][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.308][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:14:09.309][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.311][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.312][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.314][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.316][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-12 23:14:09.317][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:14:09.318][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.319][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-12 23:14:09.321][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:14:09.322][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.323][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.324][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.325][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:14:09.326][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.327][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.329][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:14:09.330][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.331][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.332][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.333][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.334][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:14:09.335][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:14:09.336][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.338][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.341][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:14:09.342][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.376][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.394][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.395][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.397][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.402][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.413][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.415][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.418][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.434][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-12 23:14:09.438][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-12 23:14:09.440][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-12 23:14:09.442][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-12 23:14:09.443][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-12 23:14:09.445][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-12 23:14:09.446][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-12 23:14:09.448][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-12 23:14:09.476][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-12 23:14:09.478][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-12 23:14:09.480][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-12 23:14:09.481][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-12 23:14:09.483][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-12 23:14:09.484][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-12 23:14:09.486][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-12 23:14:09.487][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-12 23:14:09.489][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-12 23:14:09.490][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-12 23:14:09.492][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-12 23:14:09.493][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-12 23:14:09.495][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-12 23:14:09.496][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-12 23:14:09.498][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-12 23:14:09.499][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-12 23:14:09.501][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-12 23:14:09.502][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-12 23:14:09.504][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-12 23:14:09.505][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-12 23:14:09.507][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-12 23:14:09.508][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-12 23:14:09.510][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-12 23:14:09.511][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-12 23:14:09.513][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-12 23:14:09.514][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-12 23:14:09.516][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-12 23:14:09.517][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-12 23:14:09.519][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-12 23:14:09.520][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-12 23:14:09.522][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-12 23:14:09.523][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-12 23:14:09.525][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-12 23:14:09.526][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-12 23:14:09.528][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-12 23:14:09.530][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-12 23:14:09.531][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-12 23:14:09.533][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-12 23:14:09.534][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-12 23:14:09.536][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-12 23:14:09.537][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-12 23:14:09.539][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-12 23:14:09.540][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-12 23:14:09.542][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-12 23:14:09.543][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-12 23:14:09.545][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-12 23:14:09.546][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-12 23:14:09.548][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-12 23:14:09.549][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-12 23:14:09.551][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-12 23:14:09.553][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-12 23:14:09.554][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-12 23:14:09.556][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-12 23:14:09.557][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-12 23:14:09.559][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-12 23:14:09.560][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-12 23:14:09.562][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-12 23:14:09.564][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-12 23:14:09.566][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-12 23:14:09.567][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-12 23:14:09.569][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-12 23:14:09.570][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-12 23:14:09.572][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-12 23:14:09.574][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-12 23:14:09.575][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-12 23:14:09.577][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-12 23:14:09.578][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-12 23:14:09.580][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-12 23:14:09.581][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-12 23:14:09.583][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-12 23:14:09.584][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-12 23:14:09.586][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-12 23:14:09.587][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-12 23:14:09.589][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-12 23:14:09.590][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-12 23:14:09.614][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-12 23:14:09.616][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-12 23:14:09.619][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:14:09.620][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.622][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.647][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.650][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.652][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.654][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.682][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.718][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.757][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:14:09.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:14:09.773][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-12 23:14:09.782][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:14:09.784][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.785][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.787][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.788][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:14:09.789][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.791][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-12 23:14:09.792][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.793][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.794][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-12 23:14:09.796][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:14:09.797][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.798][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-12 23:14:09.800][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-12 23:14:09.801][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-12 23:14:09.803][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-12 23:14:09.804][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:14:09.804][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-12 23:14:09.804][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-12 23:14:09.805][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-12 23:14:09.806][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.808][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.809][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:14:09.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:14:09.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:14:09.813][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:14:09.814][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-12 23:14:09.814][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-12 23:14:09.815][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:14:09.817][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:14:09.818][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-12 23:14:09.819][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:14:09.825][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-12 23:14:09.827][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-12 23:14:09.829][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-12 23:14:09.831][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-12 23:14:09.833][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-12 23:14:09.854][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:14:09.856][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-12 23:14:09.860][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:14:09.864][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:14:09.868][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:14:09.869][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:14:09.871][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-12 23:14:09.872][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-12 23:14:09.873][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-12 23:14:09.873][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-12 23:14:09.875][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:14:09.876][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:14:09.877][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-12 23:14:09.878][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-12 23:14:09.879][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:14:09.896][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:14:09.905][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:14:09.907][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:14:09.909][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:14:09.910][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:14:09.911][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-12 23:14:09.921][biodb::testThat]
biodb.INFO [2025-02-12 23:14:09.922][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-12 23:14:09.923][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:09.925][biodb::testThat]
biodb.TRACE[2025-02-12 23:14:09.940][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-02-12 23:14:09.943][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:14:09.946][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:14:09.954][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:14:09.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:09.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:09.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:09.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:09.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:09.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:14:09.997][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:09.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.021][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.022][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.050][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.056][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.058][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.059][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.060][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.062][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.068][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.069][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.070][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.072][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.073][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.079][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.080][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.081][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.089][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.091][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.092][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.093][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.095][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.100][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.102][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.104][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.134][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.136][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.144][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.145][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.146][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.148][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.155][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:10.156][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:10.157][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.158][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.160][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:10.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:10.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.165][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:10.167][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:10.168][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.169][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:10.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.176][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.178][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.179][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.180][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.190][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.193][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.198][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.200][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.201][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.202][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.204][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.209][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:10.210][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:10.212][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.213][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:10.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.220][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:10.222][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:10.223][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.224][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:10.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:10.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.232][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:14:10.233][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.234][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.236][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.237][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:14:10.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.288][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.293][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.303][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:10.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.308][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.313][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.318][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:10.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.328][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.333][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:10.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.363][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:10.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:10.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:10.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.397][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:10.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:10.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:10.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:10.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:10.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:10.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:10.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:10.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.416][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:10.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:10.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.420][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:10.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:10.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.425][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:10.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:10.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.429][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:10.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:10.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:10.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:10.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.453][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.462][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:10.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:10.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.508][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.513][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.518][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.522][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:10.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:10.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:10.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:10.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:10.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:10.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.541][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:14:10.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.546][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.552][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.562][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:14:10.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:10.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.599][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:10.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:10.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.620][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.624][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.629][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:10.673][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-12 23:14:10.676][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-12 23:14:10.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-12 23:14:10.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.680][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-12 23:14:10.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-12 23:14:10.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.685][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-12 23:14:10.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-12 23:14:10.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.690][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-12 23:14:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-12 23:14:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.763][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.811][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.816][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.820][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:10.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.848][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.850][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.852][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:10.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:10.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.875][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.881][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.889][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.896][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.898][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.900][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.901][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.911][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:10.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.933][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.948][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.955][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.957][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.958][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:10.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.991][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:10.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:10.996][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:10.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.006][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.007][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.009][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.010][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.036][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.046][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.047][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.048][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.049][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.071][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.076][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.081][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.086][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.087][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.088][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.089][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.091][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:11.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:11.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.109][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:11.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:11.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:11.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:11.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.119][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:11.120][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:11.121][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.122][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:11.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:11.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.154][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:11.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:11.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.159][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:11.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:11.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.163][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:11.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.168][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:11.169][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:11.170][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.171][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.173][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:11.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:11.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.201][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:11.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:11.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:11.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:11.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.215][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:11.217][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:11.218][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.219][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:11.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:11.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.235][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.240][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.244][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.249][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.250][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.251][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.252][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.254][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.277][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.282][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.283][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.284][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.285][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.315][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.316][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.317][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.318][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.360][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.361][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.362][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.414][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.415][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.433][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:11.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:11.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.438][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:11.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:11.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:11.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:11.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.447][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:11.448][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:11.450][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.451][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:11.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:11.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:11.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:11.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:11.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:11.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.487][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:11.488][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:11.489][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.490][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:11.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:11.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.518][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.523][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.532][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.533][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.534][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.535][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.537][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.560][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.570][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.575][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.579][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.581][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.582][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.583][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.584][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.601][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:11.602][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:11.603][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.604][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.618][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.619][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:11.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.641][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.642][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:11.643][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.644][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.657][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:11.658][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.659][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.672][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:11.674][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:11.675][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.676][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.683][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.684][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:11.685][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.686][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.700][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.701][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:11.703][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.704][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.717][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.718][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:11.719][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.720][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.734][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:11.736][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:11.737][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.738][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.745][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:11.746][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:11.747][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.748][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.763][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:11.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:11.766][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.767][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.784][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:11.785][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.786][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.793][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.794][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:11.795][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.796][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.809][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:11.810][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.812][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.818][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:11.820][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:11.821][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.822][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.829][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.830][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:11.831][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.856][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:11.857][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:11.858][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.859][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:11.872][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:11.874][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:11.875][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:11.876][ef$get] fields variable is a list.
biodb.INFO [2025-02-12 23:14:11.888][biodb::testThat]
biodb.INFO [2025-02-12 23:14:11.889][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-12 23:14:11.890][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:11.892][biodb::testThat]
biodb.DEBUG[2025-02-12 23:14:11.905][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-12 23:14:11.911][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-12 23:14:12.246][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:12.248][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-12 23:14:12.251][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-12 23:14:12.253][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-12 23:14:12.268][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-12 23:14:12.270][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-12 23:14:12.291][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:14:12.292][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:14:12.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:14:12.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:14:12.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:14:12.311][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:14:12.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:14:12.313][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:14:12.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:14:12.319][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.321][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.322][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.329][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.331][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.332][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.333][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.335][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.339][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.341][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.342][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.343][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.344][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.349][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.351][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.354][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.359][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.360][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.361][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.363][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.375][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.376][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.377][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.380][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.384][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.386][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.387][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.388][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.397][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.398][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.404][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.405][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.407][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.408][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.414][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.415][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.416][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.418][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.419][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.424][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:12.425][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:12.426][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.427][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.429][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:12.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:12.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.434][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:12.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:12.436][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.437][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.439][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:12.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:12.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.446][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.447][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.453][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.454][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.455][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.456][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.463][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.465][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.466][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.468][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.472][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:12.474][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:12.475][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.476][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:12.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.482][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:12.483][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:12.484][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.485][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.487][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:12.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:12.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.492][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:14:12.493][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.494][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.495][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.497][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:14:12.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.517][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.526][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:14:12.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.531][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.540][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:14:12.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.550][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:14:12.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:14:12.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:14:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.603][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:14:12.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:14:12.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.622][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:12.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:12.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.626][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:12.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:12.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.631][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:12.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:12.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.636][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:12.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:12.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.645][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:14:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:14:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:12.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:12.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:14:12.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:14:12.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.665][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.679][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.683][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.688][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:14:12.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.693][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:14:12.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.712][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.716][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:14:12.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.740][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.744][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.759][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:12.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:12.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:14:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:14:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.768][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:14:12.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.787][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:14:12.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:14:12.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.817][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:12.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:12.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.821][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:12.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:12.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.831][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:12.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:14:12.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:14:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:14:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:12.864][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-12 23:14:12.865][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-12 23:14:12.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-12 23:14:12.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-12 23:14:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-12 23:14:12.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-12 23:14:12.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-12 23:14:12.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-12 23:14:12.925][biodb::testThat]
biodb.INFO [2025-02-12 23:14:12.926][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-12 23:14:12.927][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:12.928][biodb::testThat]
biodb.TRACE[2025-02-12 23:14:12.932][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.933][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.934][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.936][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:12.937][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-02-12 23:14:12.987][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:12.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:12.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:12.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.004][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-02-12 23:14:13.006][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-12 23:14:13.007][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-12 23:14:13.008][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-12 23:14:13.010][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.012][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.014][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:14:13.015][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.017][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:14:13.018][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:14:13.020][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:14:13.021][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:14:13.022][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:14:13.024][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:14:13.025][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-12 23:14:13.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.046][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:14:13.047][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:14:13.048][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-12 23:14:13.073][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.074][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.076][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.077][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.078][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-02-12 23:14:13.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.122][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.127][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.135][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-02-12 23:14:13.179][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-12 23:14:13.181][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-12 23:14:13.182][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-12 23:14:13.194][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.196][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.198][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:14:13.200][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.201][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:14:13.214][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:14:13.215][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:14:13.216][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:14:13.218][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:14:13.219][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:14:13.220][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-12 23:14:13.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.237][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:14:13.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:14:13.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.247][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:14:13.248][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:14:13.249][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-12 23:14:13.289][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.290][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.291][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.292][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.294][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-02-12 23:14:13.326][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.331][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.343][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-02-12 23:14:13.345][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-02-12 23:14:13.346][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-12 23:14:13.348][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-12 23:14:13.350][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.352][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.353][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:14:13.355][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.356][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:14:13.358][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:14:13.359][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:14:13.360][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:14:13.362][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:14:13.363][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:14:13.364][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-12 23:14:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.371][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.381][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:14:13.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.386][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:14:13.387][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:14:13.388][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-02-12 23:14:13.433][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.434][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-12 23:14:13.435][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:13.436][biodb::testThat]
biodb.TRACE[2025-02-12 23:14:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.462][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.488][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-12 23:14:13.489][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-12 23:14:13.490][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-12 23:14:13.492][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.494][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.496][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:14:13.498][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:14:13.499][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:14:13.500][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:14:13.502][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:14:13.503][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:14:13.504][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:14:13.505][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:14:13.507][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-12 23:14:13.509][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.514][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:14:13.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:14:13.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:14:13.528][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:14:13.529][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-02-12 23:14:13.590][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.591][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-12 23:14:13.592][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:13.593][biodb::testThat]
biodb.TRACE[2025-02-12 23:14:13.621][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.626][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-12 23:14:13.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-12 23:14:13.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-12 23:14:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-12 23:14:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.679][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.684][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-12 23:14:13.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.689][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-12 23:14:13.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-12 23:14:13.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:14:13.693][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-12 23:14:13.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-12 23:14:13.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:14:13.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-12 23:14:13.711][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.712][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-12 23:14:13.714][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:13.715][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.726][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.727][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-12 23:14:13.728][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:13.729][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.747][biodb::testThat]
biodb.INFO [2025-02-12 23:14:13.748][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-12 23:14:13.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:14:13.750][biodb::testThat]
biodb.DEBUG[2025-02-12 23:14:13.754][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-02-12 23:14:14.562][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-02-12 23:15:42.529][biodb::testThat]
biodb.INFO [2025-02-12 23:15:42.531][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-12 23:15:42.532][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:15:42.533][biodb::testThat]
biodb.DEBUG[2025-02-12 23:15:42.771][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-02-12 23:16:18.925][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:18.927][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:18.928][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:18.930][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:18.931][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:18.932][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:18.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:18.934][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:18.936][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:18.937][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:18.938][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:18.939][ef$get] fields variable is a list.
biodb.INFO [2025-02-12 23:16:18.942][biodb::testThat]
biodb.INFO [2025-02-12 23:16:18.943][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-02-12 23:16:18.944][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:18.945][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:18.948][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-02-12 23:16:19.272][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-12 23:16:19.275][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:19.276][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-12 23:16:19.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-02-12 23:16:19.293][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-12 23:16:19.294][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-12 23:16:19.296][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-12 23:16:19.298][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:19.299][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:16:19.300][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:16:19.302][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:19.303][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:19.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:19.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:19.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:19.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:19.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:19.456][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:19.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:19.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.461][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:19.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:19.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:19.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:19.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:19.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:19.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:19.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:19.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:19.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:19.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:19.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:19.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:19.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:19.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:19.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:19.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:19.496][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-12 23:16:19.498][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-02-12 23:16:19.847][biodb::testThat]
biodb.INFO [2025-02-12 23:16:19.848][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-02-12 23:16:19.850][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:19.851][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:20.108][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-02-12 23:16:20.110][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-02-12 23:16:20.111][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-12 23:16:20.113][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.115][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-12 23:16:20.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-02-12 23:16:20.119][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-12 23:16:20.120][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-12 23:16:20.122][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-12 23:16:20.123][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.125][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:16:20.126][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:16:20.128][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:20.129][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:20.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:20.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:20.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:20.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:20.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:20.270][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:20.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:20.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.278][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:20.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:20.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:20.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:20.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:20.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:20.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:20.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:20.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:20.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:20.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:20.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:20.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:20.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:20.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:20.325][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-12 23:16:20.326][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-02-12 23:16:20.327][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-02-12 23:16:20.346][biodb::testThat]
biodb.INFO [2025-02-12 23:16:20.347][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-02-12 23:16:20.348][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:20.350][biodb::testThat]
biodb.INFO [2025-02-12 23:16:20.380][biodb::testThat]
biodb.INFO [2025-02-12 23:16:20.381][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-02-12 23:16:20.383][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:20.384][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:20.387][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.388][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.390][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:16:20.392][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.393][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:16:20.395][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:16:20.396][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:16:20.397][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:16:20.398][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-02-12 23:16:20.410][biodb::testThat]
biodb.INFO [2025-02-12 23:16:20.411][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-02-12 23:16:20.413][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:20.414][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:20.417][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.418][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.420][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:16:20.422][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:20.423][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:16:20.425][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:16:20.426][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:16:20.427][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:16:20.429][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-02-12 23:16:20.441][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:20.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:20.444][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.445][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.446][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:20.447][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:20.448][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.449][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:20.451][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:20.452][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:20.453][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:20.454][ef$get] fields variable is a list.
biodb.INFO [2025-02-12 23:16:20.455][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-12 23:16:20.457][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-12 23:16:20.464][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-12 23:16:20.465][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-12 23:16:20.466][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:20.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:20.468][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:20.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:20.471][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:20.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-12 23:16:22.526][biodb::testContext]
biodb.INFO [2025-02-12 23:16:22.527][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:16:22.529][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-02-12 23:16:22.530][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:16:22.531][biodb::testContext]
biodb.INFO [2025-02-12 23:16:25.351][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-12 23:16:26.201][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-12 23:16:27.269][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:16:27.272][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-12 23:16:27.274][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-12 23:16:27.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.280][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-12 23:16:27.281][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-12 23:16:27.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.295][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-12 23:16:27.297][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-12 23:16:27.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.301][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-12 23:16:27.302][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-12 23:16:27.304][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-12 23:16:27.305][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.307][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.308][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-12 23:16:27.309][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-12 23:16:27.310][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-12 23:16:27.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.315][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-12 23:16:27.316][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-12 23:16:27.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.320][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-12 23:16:27.321][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-12 23:16:27.323][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-12 23:16:27.324][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.327][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-12 23:16:27.328][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-12 23:16:27.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.333][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-12 23:16:27.334][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-12 23:16:27.335][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-12 23:16:27.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.339][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-12 23:16:27.341][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-12 23:16:27.342][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-12 23:16:27.343][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-12 23:16:27.344][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-12 23:16:27.345][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-12 23:16:27.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.350][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-12 23:16:27.351][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-12 23:16:27.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.355][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-12 23:16:27.356][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-12 23:16:27.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.361][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-12 23:16:27.362][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-12 23:16:27.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.366][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-12 23:16:27.367][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-12 23:16:27.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.372][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-12 23:16:27.373][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-12 23:16:27.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.377][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-12 23:16:27.379][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-12 23:16:27.383][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-12 23:16:27.385][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.388][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-12 23:16:27.389][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-12 23:16:27.391][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-12 23:16:27.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.395][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-12 23:16:27.424][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.425][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-12 23:16:27.426][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.428][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:27.429][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.430][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.431][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.432][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.434][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-12 23:16:27.435][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:27.436][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.437][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-12 23:16:27.439][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:27.440][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.441][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.442][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:16:27.442][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-12 23:16:27.442][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-12 23:16:27.442][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-12 23:16:27.442][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-12 23:16:27.443][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:27.445][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.446][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.447][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:27.448][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.449][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.450][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.451][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.453][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:27.454][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:27.455][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.456][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.457][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-12 23:16:27.459][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.460][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-12 23:16:27.462][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.463][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:27.464][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.465][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.466][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.468][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.469][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-12 23:16:27.470][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:27.471][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.472][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-12 23:16:27.474][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:27.475][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.476][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.477][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:16:27.477][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-12 23:16:27.477][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-12 23:16:27.477][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-12 23:16:27.477][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-12 23:16:27.478][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:27.480][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.482][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:27.483][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.484][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.485][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.486][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.488][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:27.489][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:27.490][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.491][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.492][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-12 23:16:27.494][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.496][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-12 23:16:27.497][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.498][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:27.499][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.500][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.502][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.503][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.504][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-12 23:16:27.505][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:27.507][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.508][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-12 23:16:27.509][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:27.510][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.511][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.512][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.514][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:27.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.516][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.517][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:27.518][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.519][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.521][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.522][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.523][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:27.524][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:27.525][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.526][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.528][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-12 23:16:27.530][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.531][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-12 23:16:27.537][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.538][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:27.540][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.541][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.542][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.543][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.545][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-12 23:16:27.546][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:27.547][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.548][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-12 23:16:27.549][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:27.551][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.552][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:27.553][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.554][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:27.555][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.556][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.557][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:27.559][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:27.560][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:27.561][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:27.562][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.563][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:27.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:27.565][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:27.567][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:27.568][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:16:27.569][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.574][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.590][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.593][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.622][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.626][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.627][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.633][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.642][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.669][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-12 23:16:27.671][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-12 23:16:27.672][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-12 23:16:27.674][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-12 23:16:27.675][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-12 23:16:27.677][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-12 23:16:27.678][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-12 23:16:27.680][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-12 23:16:27.682][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-12 23:16:27.683][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-12 23:16:27.685][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-12 23:16:27.686][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-12 23:16:27.688][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-12 23:16:27.689][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-12 23:16:27.691][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-12 23:16:27.692][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-12 23:16:27.694][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-12 23:16:27.695][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-12 23:16:27.697][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-12 23:16:27.699][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-12 23:16:27.700][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-12 23:16:27.702][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-12 23:16:27.703][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-12 23:16:27.705][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-12 23:16:27.706][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-12 23:16:27.708][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-12 23:16:27.709][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-12 23:16:27.711][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-12 23:16:27.712][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-12 23:16:27.714][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-12 23:16:27.716][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-12 23:16:27.717][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-12 23:16:27.719][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-12 23:16:27.720][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-12 23:16:27.722][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-12 23:16:27.723][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-12 23:16:27.725][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-12 23:16:27.726][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-12 23:16:27.728][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-12 23:16:27.729][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-12 23:16:27.731][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-12 23:16:27.732][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-12 23:16:27.734][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-12 23:16:27.736][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-12 23:16:27.737][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-12 23:16:27.739][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-12 23:16:27.740][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-12 23:16:27.742][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-12 23:16:27.743][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-12 23:16:27.745][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-12 23:16:27.747][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-12 23:16:27.748][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-12 23:16:27.750][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-12 23:16:27.751][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-12 23:16:27.753][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-12 23:16:27.754][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-12 23:16:27.756][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-12 23:16:27.758][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-12 23:16:27.759][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-12 23:16:27.761][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-12 23:16:27.762][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-12 23:16:27.764][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-12 23:16:27.765][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-12 23:16:27.767][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-12 23:16:27.769][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-12 23:16:27.770][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-12 23:16:27.772][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-12 23:16:27.773][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-12 23:16:27.775][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-12 23:16:27.776][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-12 23:16:27.778][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-12 23:16:27.779][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-12 23:16:27.788][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-12 23:16:27.790][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-12 23:16:27.792][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-12 23:16:27.793][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-12 23:16:27.795][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-12 23:16:27.796][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-12 23:16:27.798][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-12 23:16:27.800][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-12 23:16:27.801][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-12 23:16:27.803][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-12 23:16:27.804][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-12 23:16:27.806][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-12 23:16:27.808][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-12 23:16:27.809][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:16:27.810][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.812][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.824][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.825][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.826][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.830][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.832][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.844][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.850][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.851][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.854][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.878][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.890][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.928][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:27.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:27.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:27.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:27.955][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:27.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:27.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:27.963][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-12 23:16:34.835][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:34.839][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:34.840][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-12 23:16:34.842][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:34.843][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:34.844][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:34.845][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-12 23:16:34.846][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:34.847][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:34.849][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-12 23:16:34.850][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:34.851][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:34.852][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-12 23:16:34.854][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-12 23:16:34.855][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-12 23:16:34.856][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:34.858][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:16:34.858][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-12 23:16:34.858][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-12 23:16:34.859][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-12 23:16:34.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:34.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:34.862][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:34.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:34.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:34.866][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:34.867][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-12 23:16:34.867][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-12 23:16:34.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:34.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:34.870][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:34.872][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:34.873][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-12 23:16:34.875][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-12 23:16:34.877][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-12 23:16:34.878][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-12 23:16:34.880][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-12 23:16:34.883][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:34.885][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-12 23:16:34.886][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:34.888][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:16:34.889][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:34.890][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:34.892][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-12 23:16:34.893][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-12 23:16:34.895][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-12 23:16:34.895][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-12 23:16:34.896][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:34.897][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:34.898][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-12 23:16:34.899][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-12 23:16:34.900][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:34.902][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:16:34.904][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:34.905][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:34.907][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:16:34.908][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:34.909][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-12 23:16:34.911][biodb::testThat]
biodb.INFO [2025-02-12 23:16:34.912][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-02-12 23:16:34.914][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:34.915][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:34.921][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:34.923][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:34.925][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:16:34.926][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:34.927][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:16:34.929][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:16:34.994][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:16:34.995][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:16:34.997][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:16:35.001][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-02-12 23:16:35.010][biodb::testThat]
biodb.INFO [2025-02-12 23:16:35.011][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-02-12 23:16:35.012][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:35.013][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:35.027][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-12 23:16:35.029][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-12 23:16:35.031][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:35.033][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-12 23:16:35.035][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-12 23:16:35.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-12 23:16:35.076][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-12 23:16:35.078][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-12 23:16:35.080][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:16:35.081][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:16:35.083][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:35.084][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:35.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:35.093][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:35.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:35.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:35.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:35.100][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.101][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.102][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.110][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.111][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.112][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.114][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.115][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.120][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.121][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.122][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.130][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.131][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.132][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.133][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.135][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.140][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.141][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.142][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.143][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.145][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.150][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.151][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.152][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.153][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.155][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.159][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.161][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.167][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.168][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.170][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.175][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.177][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.178][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.180][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.185][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.186][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.187][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.188][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.194][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.196][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.198][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.204][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:35.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:35.207][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.208][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.209][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:35.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:35.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.214][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:35.215][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:35.216][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.218][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.219][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:35.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:35.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.224][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.225][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.226][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.234][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.235][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.236][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.237][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.244][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.245][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.246][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.247][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.249][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.253][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:35.255][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:35.256][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.257][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:35.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:35.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.263][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:35.264][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:35.266][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.267][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.268][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:35.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:35.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.273][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:16:35.274][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.275][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.277][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.278][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:16:35.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.303][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.312][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:35.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.317][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.322][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.327][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:35.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:35.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:35.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:35.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:35.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:35.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.403][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:35.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:35.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.408][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:35.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:35.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.413][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:35.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:35.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:35.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:35.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:35.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:35.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:35.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:35.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:35.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.442][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:35.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.471][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.485][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:35.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.495][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.510][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:35.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.540][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.548][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.555][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:35.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.563][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:35.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:35.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:35.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:35.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:35.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:35.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.594][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:16:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.625][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:16:35.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:35.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.649][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:35.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.667][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:35.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:35.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.674][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:35.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:35.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.690][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:35.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:35.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:35.745][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-12 23:16:35.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:35.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:35.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:35.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:35.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-12 23:16:35.882][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-12 23:16:35.893][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-12 23:16:35.895][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-12 23:16:35.898][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-12 23:16:35.900][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:35.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:35.903][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:35.905][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:35.906][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:35.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-12 23:16:36.642][biodb::testContext]
biodb.INFO [2025-02-12 23:16:36.643][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:16:36.644][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-02-12 23:16:36.645][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-12 23:16:36.646][biodb::testContext]
biodb.INFO [2025-02-12 23:16:36.740][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-12 23:16:36.744][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-12 23:16:36.897][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:16:36.899][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-12 23:16:36.900][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-12 23:16:36.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.905][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-12 23:16:36.906][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-12 23:16:36.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.910][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-12 23:16:36.911][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-12 23:16:36.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.916][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-12 23:16:36.917][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-12 23:16:36.918][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-12 23:16:36.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.922][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-12 23:16:36.924][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-12 23:16:36.925][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-12 23:16:36.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.929][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-12 23:16:36.930][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-12 23:16:36.931][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.935][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-12 23:16:36.936][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-12 23:16:36.937][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-12 23:16:36.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.941][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-12 23:16:36.943][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-12 23:16:36.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.947][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-12 23:16:36.948][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-12 23:16:36.949][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-12 23:16:36.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.954][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-12 23:16:36.955][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-12 23:16:36.956][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-12 23:16:36.957][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-12 23:16:36.958][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-12 23:16:36.960][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-12 23:16:36.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.964][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-12 23:16:36.965][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-12 23:16:36.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.969][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-12 23:16:36.971][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-12 23:16:36.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.975][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-12 23:16:36.976][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-12 23:16:36.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.980][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-12 23:16:36.982][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-12 23:16:36.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.986][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-12 23:16:36.987][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-12 23:16:36.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:36.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:36.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:36.991][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-12 23:16:36.993][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-12 23:16:37.003][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-12 23:16:37.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.008][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-12 23:16:37.009][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-12 23:16:37.010][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-12 23:16:37.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.014][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-12 23:16:37.038][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.039][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-12 23:16:37.040][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.042][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:37.043][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.044][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.045][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.046][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.047][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-12 23:16:37.049][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:37.050][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.051][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-12 23:16:37.052][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:37.053][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.055][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.056][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:16:37.056][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-12 23:16:37.056][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-12 23:16:37.056][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-12 23:16:37.056][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-12 23:16:37.057][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:37.058][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.059][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.060][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:37.062][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.063][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.064][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.065][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.066][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:37.067][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:37.068][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.070][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.071][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-12 23:16:37.073][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.074][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-12 23:16:37.075][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.076][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:37.078][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.079][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.080][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.081][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.082][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-12 23:16:37.084][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:37.085][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.086][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-12 23:16:37.087][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:37.088][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.089][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.091][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:16:37.091][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-12 23:16:37.091][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-12 23:16:37.091][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-12 23:16:37.091][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-12 23:16:37.092][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:37.093][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.094][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.095][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:37.096][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.097][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.099][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.100][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.101][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:37.102][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:37.108][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.110][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.111][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-12 23:16:37.113][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.114][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-12 23:16:37.115][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.117][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:37.118][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.119][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.120][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.121][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.123][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-12 23:16:37.124][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:37.125][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.126][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-12 23:16:37.127][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:37.129][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.130][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.131][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.132][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:37.133][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.134][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.135][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:37.137][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.138][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.139][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.140][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.141][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:37.142][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:37.143][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.145][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.146][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-12 23:16:37.148][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.149][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-12 23:16:37.150][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.151][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:37.153][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.154][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.155][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.156][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.157][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-12 23:16:37.158][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:37.160][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.161][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-12 23:16:37.162][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:37.163][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.164][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.166][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.167][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-12 23:16:37.168][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.169][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.170][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:37.171][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.172][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.174][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.175][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.176][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:37.177][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:37.178][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.179][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.181][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:16:37.182][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.195][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.197][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.202][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.206][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.211][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.219][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.221][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.222][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.248][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.249][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.253][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.254][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.255][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.256][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.259][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.268][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.269][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.270][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.276][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.281][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-12 23:16:37.283][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-12 23:16:37.284][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-12 23:16:37.286][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-12 23:16:37.287][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-12 23:16:37.289][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-12 23:16:37.291][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-12 23:16:37.292][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-12 23:16:37.294][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-12 23:16:37.295][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-12 23:16:37.297][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-12 23:16:37.298][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-12 23:16:37.300][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-12 23:16:37.301][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-12 23:16:37.303][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-12 23:16:37.305][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-12 23:16:37.306][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-12 23:16:37.308][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-12 23:16:37.309][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-12 23:16:37.311][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-12 23:16:37.312][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-12 23:16:37.314][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-12 23:16:37.316][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-12 23:16:37.317][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-12 23:16:37.319][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-12 23:16:37.320][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-12 23:16:37.322][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-12 23:16:37.323][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-12 23:16:37.325][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-12 23:16:37.326][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-12 23:16:37.328][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-12 23:16:37.330][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-12 23:16:37.331][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-12 23:16:37.333][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-12 23:16:37.334][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-12 23:16:37.336][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-12 23:16:37.337][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-12 23:16:37.339][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-12 23:16:37.342][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-12 23:16:37.345][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-12 23:16:37.347][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-12 23:16:37.350][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-12 23:16:37.363][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-12 23:16:37.367][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-12 23:16:37.370][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-12 23:16:37.373][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-12 23:16:37.376][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-12 23:16:37.379][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-12 23:16:37.381][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-12 23:16:37.384][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-12 23:16:37.387][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-12 23:16:37.389][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-12 23:16:37.392][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-12 23:16:37.394][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-12 23:16:37.397][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-12 23:16:37.399][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-12 23:16:37.402][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-12 23:16:37.405][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-12 23:16:37.407][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-12 23:16:37.410][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-12 23:16:37.412][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-12 23:16:37.415][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-12 23:16:37.417][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-12 23:16:37.420][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-12 23:16:37.422][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-12 23:16:37.425][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-12 23:16:37.428][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-12 23:16:37.430][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-12 23:16:37.433][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-12 23:16:37.436][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-12 23:16:37.439][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-12 23:16:37.441][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-12 23:16:37.444][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-12 23:16:37.447][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-12 23:16:37.449][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-12 23:16:37.452][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-12 23:16:37.454][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-12 23:16:37.457][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-12 23:16:37.460][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-12 23:16:37.462][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-12 23:16:37.465][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-12 23:16:37.467][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-12 23:16:37.469][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-12 23:16:37.472][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-12 23:16:37.475][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-12 23:16:37.477][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-12 23:16:37.478][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.481][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.485][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.511][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.513][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.519][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.545][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.564][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.568][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.632][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.649][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-12 23:16:37.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:37.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:37.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:37.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:37.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:37.684][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-12 23:16:37.687][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:37.691][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.693][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.695][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.697][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-12 23:16:37.698][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.700][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-12 23:16:37.702][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.704][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.706][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-12 23:16:37.708][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-12 23:16:37.710][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.712][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-12 23:16:37.713][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-12 23:16:37.715][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-12 23:16:37.718][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-12 23:16:37.719][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-12 23:16:37.719][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-12 23:16:37.719][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-12 23:16:37.721][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-12 23:16:37.723][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.725][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.727][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-12 23:16:37.728][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-12 23:16:37.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-12 23:16:37.741][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-12 23:16:37.743][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-12 23:16:37.743][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-12 23:16:37.745][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:37.747][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:37.749][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-12 23:16:37.751][self$setPropertyValue]
biodb.DEBUG[2025-02-12 23:16:37.753][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-12 23:16:37.756][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-12 23:16:37.759][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-12 23:16:37.762][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-12 23:16:37.765][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-12 23:16:37.770][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:37.772][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-12 23:16:37.774][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:37.777][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:16:37.780][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:37.782][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:37.784][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-12 23:16:37.786][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-12 23:16:37.788][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-12 23:16:37.788][self$setPropertyValue] Setting property "urls" to "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-12 23:16:37.790][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-12 23:16:37.792][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-12 23:16:37.793][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-12 23:16:37.795][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-12 23:16:37.797][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-12 23:16:37.801][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:16:37.803][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:37.805][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:37.808][private$addConnectorRules] Create new rule for URL "E:/biocbuild/bbs-3.21-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-12 23:16:37.810][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-12 23:16:37.812][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-12 23:16:37.815][biodb::testThat]
biodb.INFO [2025-02-12 23:16:37.817][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-02-12 23:16:37.818][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-12 23:16:37.820][biodb::testThat]
biodb.DEBUG[2025-02-12 23:16:37.824][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-12 23:16:37.826][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-12 23:16:37.828][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-12 23:16:37.835][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:37.838][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:37.841][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:16:37.843][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:37.845][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:16:37.848][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:16:37.850][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:16:37.852][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:16:37.854][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:16:37.856][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:16:37.858][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-02-12 23:16:37.881][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-12 23:16:37.884][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-12 23:16:37.888][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:37.891][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-12 23:16:37.896][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-12 23:16:37.899][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-12 23:16:37.909][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-12 23:16:37.912][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-12 23:16:37.915][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:16:37.917][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:16:37.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:37.923][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:37.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:41.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:41.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:41.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:41.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:41.030][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.050][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.052][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.060][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.061][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.064][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.070][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.071][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.072][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.074][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.075][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.080][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.081][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.083][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.091][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.093][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.094][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.095][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.103][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.104][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.105][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.114][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.115][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.121][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.122][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.123][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.124][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.131][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.132][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.133][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.134][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.141][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.142][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.143][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.144][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.152][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.153][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.154][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.163][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.164][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.178][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.179][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.186][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.189][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.191][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.197][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.198][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.199][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.200][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:41.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:41.209][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.210][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:41.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.217][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:16:41.218][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.220][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:16:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.241][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.251][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.255][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.260][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.265][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:41.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.348][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.353][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.358][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.362][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.396][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.415][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.439][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.464][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.474][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.483][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:41.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.488][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:41.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:41.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:41.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:41.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:16:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:16:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.523][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.527][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.537][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.547][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:41.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:41.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.552][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:41.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:41.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:41.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:41.601][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-12 23:16:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.607][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.612][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.616][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:41.621][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:16:41.622][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:16:41.623][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:41.624][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:41.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:41.710][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:41.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:41.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:41.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:41.715][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-12 23:16:41.717][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-12 23:16:41.719][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:41.721][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-12 23:16:41.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-12 23:16:41.725][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-12 23:16:41.728][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-12 23:16:41.730][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-12 23:16:41.731][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-12 23:16:41.732][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-12 23:16:41.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:41.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:41.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:41.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:41.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:41.746][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:41.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:41.750][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.752][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.753][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.756][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:41.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:41.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.762][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.764][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.768][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.773][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.774][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.775][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.776][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.778][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.793][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.795][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.798][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.800][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:41.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.815][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.817][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.819][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:41.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.827][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.829][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.830][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.832][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:41.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.842][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.844][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.846][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.848][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:41.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.858][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.860][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.864][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:41.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.874][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.876][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.878][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.880][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.890][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.892][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.894][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.895][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:41.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.906][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.908][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.909][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.911][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.913][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.921][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.923][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.925][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:41.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:41.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.938][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.940][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.941][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.942][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:41.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.949][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.950][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.952][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.953][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.955][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:41.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.963][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.968][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.978][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.980][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.982][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:41.984][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:41.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.003][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:42.005][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:42.007][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.009][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.011][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:42.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:42.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.019][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:16:42.021][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.023][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.025][ef$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-12 23:16:42.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.043][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.057][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:42.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:42.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:42.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.072][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-12 23:16:42.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-12 23:16:42.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:42.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:42.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.088][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:42.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:42.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-12 23:16:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-12 23:16:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:42.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:42.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-12 23:16:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-12 23:16:42.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:42.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:42.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:42.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:42.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:42.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-12 23:16:42.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:42.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:42.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-12 23:16:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:42.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:42.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-12 23:16:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.219][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-12 23:16:42.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.227][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.234][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.243][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.253][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:42.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:42.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-12 23:16:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-12 23:16:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:42.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:42.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.268][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:42.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:42.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-12 23:16:42.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-12 23:16:42.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.294][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:42.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:42.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.300][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:42.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-12 23:16:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:42.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:42.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:42.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:42.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-12 23:16:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.339][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.352][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:42.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:42.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:42.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.518][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:42.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-12 23:16:42.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.527][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:42.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.536][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:42.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:42.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-12 23:16:42.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:42.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:42.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:42.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-12 23:16:42.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-12 23:16:42.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:16:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.585][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-12 23:16:42.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-12 23:16:42.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.591][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.611][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-12 23:16:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-12 23:16:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.621][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:42.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:42.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-12 23:16:42.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-12 23:16:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-12 23:16:42.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:42.677][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-12 23:16:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.694][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:42.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:42.704][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:16:42.705][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:16:42.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:42.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:42.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:46.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:46.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:46.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:46.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:46.245][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-12 23:16:46.246][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-12 23:16:46.247][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-12 23:16:46.250][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:46.252][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:46.254][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:16:46.255][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:46.256][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:16:46.258][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:16:46.259][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:16:46.261][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:16:46.262][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:16:46.264][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:16:46.265][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-12 23:16:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.278][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.283][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.294][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:46.304][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:16:46.305][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:16:46.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:46.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:46.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:46.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:46.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:46.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:46.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:46.321][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.326][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.351][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:46.361][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-12 23:16:46.362][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:16:46.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:46.365][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:46.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:46.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:46.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:46.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:46.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-12 23:16:46.450][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-12 23:16:46.451][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-12 23:16:46.452][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-12 23:16:46.455][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:46.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:46.458][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-12 23:16:46.460][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-12 23:16:46.461][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-12 23:16:46.463][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-12 23:16:46.464][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-12 23:16:46.465][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-12 23:16:46.467][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-12 23:16:46.468][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-12 23:16:46.469][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-12 23:16:46.471][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.502][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.510][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:46.518][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-12 23:16:46.520][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-02-12 23:16:46.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:46.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:46.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:46.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:46.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:46.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:46.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-12 23:16:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.666][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.673][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.689][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.707][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-12 23:16:46.715][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-12 23:16:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-12 23:16:46.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-12 23:16:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-12 23:16:46.723][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-12 23:16:46.725][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-12 23:16:46.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-12 23:16:46.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:46.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:47.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:47.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:47.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:47.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-12 23:16:48.067][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-12 23:16:48.069][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-12 23:16:48.071][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-12 23:16:48.072][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-12 23:16:48.074][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-12 23:16:48.075][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-12 23:16:48.076][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-12 23:16:48.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-12 23:16:48.078][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-12 23:16:48.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.56    0.62  161.79

CHECK results for biodbHmdb on palomino7

Summary

Command output

Installation output

Tests output

Example timings