Multiple platform build/check report for BioC 3.21 - CHECK results for biodbHmdb on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.1 LTS)	x86_64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4720
palomino7	Windows Server 2022 Datacenter	x64	R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences"	4482
lconway	macOS 12.7.1 Monterey	x86_64	R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"	4493
kjohnson3	macOS 13.7.1 Ventura	arm64	R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences"	4446
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on lconway

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.13.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz

StartedAt: 2025-02-14 19:03:43 -0500 (Fri, 14 Feb 2025)

EndedAt: 2025-02-14 19:04:47 -0500 (Fri, 14 Feb 2025)

EllapsedTime: 64.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.13.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck’
* using R Under development (unstable) (2025-01-22 r87618)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 14.2.0
* running under: macOS Monterey 12.7.6
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.13.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  ‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.21-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** this is package ‘biodbHmdb’ version ‘1.13.0’
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
    accession_tag("<accession>", "</accession>"),
    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
    closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DR_NO_REMAP -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  ‘biodbHmdb’ 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2025-02-14 19:04:23.864][biodb::testContext]
biodb.INFO [2025-02-14 19:04:23.868][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:23.869][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2025-02-14 19:04:23.870][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:23.871][biodb::testContext]
biodb.INFO [2025-02-14 19:04:23.873][biodb::testThat]
biodb.INFO [2025-02-14 19:04:23.875][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2025-02-14 19:04:23.876][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:23.877][biodb::testThat]
biodb.INFO [2025-02-14 19:04:24.007][biodb::testContext]
biodb.INFO [2025-02-14 19:04:24.008][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:24.010][biodb::testContext] Test context - Generic tests
biodb.INFO [2025-02-14 19:04:24.013][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:24.015][biodb::testContext]
biodb.INFO [2025-02-14 19:04:24.027][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-14 19:04:24.030][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-14 19:04:24.039][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:24.041][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-14 19:04:24.043][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-14 19:04:24.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.048][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-14 19:04:24.079][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-14 19:04:24.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.085][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-14 19:04:24.086][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-14 19:04:24.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.091][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-14 19:04:24.092][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-14 19:04:24.093][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-14 19:04:24.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.097][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-14 19:04:24.098][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-14 19:04:24.099][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-14 19:04:24.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.103][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-14 19:04:24.105][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-14 19:04:24.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.109][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-14 19:04:24.111][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-14 19:04:24.112][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-14 19:04:24.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.117][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-14 19:04:24.118][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-14 19:04:24.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.122][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-14 19:04:24.123][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-14 19:04:24.125][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-14 19:04:24.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.129][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-14 19:04:24.130][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-14 19:04:24.131][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-14 19:04:24.132][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-14 19:04:24.133][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-14 19:04:24.134][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-14 19:04:24.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.139][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-14 19:04:24.140][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-14 19:04:24.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.145][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-14 19:04:24.146][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-14 19:04:24.147][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.151][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-14 19:04:24.152][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-14 19:04:24.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.157][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-14 19:04:24.158][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-14 19:04:24.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.161][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-14 19:04:24.163][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-14 19:04:24.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.167][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-14 19:04:24.168][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-14 19:04:24.201][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-14 19:04:24.202][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.206][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-14 19:04:24.207][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-14 19:04:24.208][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-14 19:04:24.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.215][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-14 19:04:24.262][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.283][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-14 19:04:24.284][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.286][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:24.287][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.288][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.289][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.291][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.292][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-14 19:04:24.293][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:24.294][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.295][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-14 19:04:24.296][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:24.297][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.299][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.300][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:24.300][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-14 19:04:24.300][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-14 19:04:24.300][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-14 19:04:24.300][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-14 19:04:24.301][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:24.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.303][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.304][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:24.305][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.306][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.307][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.309][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.310][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:24.319][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:24.320][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.322][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.323][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-14 19:04:24.326][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.328][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-14 19:04:24.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.330][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:24.332][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.333][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.334][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.335][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.337][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-14 19:04:24.338][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:24.339][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.341][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-14 19:04:24.342][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:24.343][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.345][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.346][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:24.346][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-14 19:04:24.346][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-14 19:04:24.346][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-14 19:04:24.346][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-14 19:04:24.347][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:24.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.349][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.350][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:24.351][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.352][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.353][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.354][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.355][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:24.356][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:24.358][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.359][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.360][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-14 19:04:24.362][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.364][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-14 19:04:24.365][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.366][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:24.367][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.368][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.369][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.370][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.372][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-14 19:04:24.373][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:24.374][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.375][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-14 19:04:24.377][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:24.378][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.379][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.380][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.381][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:24.383][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.384][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.385][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:24.386][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.389][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.390][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.392][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:24.393][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:24.394][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.396][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.397][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-14 19:04:24.400][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.401][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-14 19:04:24.402][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.404][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:24.405][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.406][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.407][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.408][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.409][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-14 19:04:24.411][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:24.412][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.413][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-14 19:04:24.415][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:24.416][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.417][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.418][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.419][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:24.420][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.421][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.422][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:24.423][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.424][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.425][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.426][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.427][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:24.428][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:24.429][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.430][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.435][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:24.436][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.443][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.478][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.500][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.514][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.515][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.532][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-14 19:04:24.539][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-14 19:04:24.547][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-14 19:04:24.549][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-14 19:04:24.551][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-14 19:04:24.552][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-14 19:04:24.554][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-14 19:04:24.556][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-14 19:04:24.557][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-14 19:04:24.558][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-14 19:04:24.560][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-14 19:04:24.562][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-14 19:04:24.563][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-14 19:04:24.565][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-14 19:04:24.567][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-14 19:04:24.568][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-14 19:04:24.570][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-14 19:04:24.572][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-14 19:04:24.574][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-14 19:04:24.575][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-14 19:04:24.577][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-14 19:04:24.579][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-14 19:04:24.581][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-14 19:04:24.582][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-14 19:04:24.584][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-14 19:04:24.585][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-14 19:04:24.586][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-14 19:04:24.588][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-14 19:04:24.590][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-14 19:04:24.592][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-14 19:04:24.594][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-14 19:04:24.596][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-14 19:04:24.598][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-14 19:04:24.599][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-14 19:04:24.601][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-14 19:04:24.603][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-14 19:04:24.605][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-14 19:04:24.607][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-14 19:04:24.609][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-14 19:04:24.610][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-14 19:04:24.612][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-14 19:04:24.614][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-14 19:04:24.615][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-14 19:04:24.617][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-14 19:04:24.620][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-14 19:04:24.621][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-14 19:04:24.623][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-14 19:04:24.625][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-14 19:04:24.627][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-14 19:04:24.628][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-14 19:04:24.630][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-14 19:04:24.631][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-14 19:04:24.633][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-14 19:04:24.634][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-14 19:04:24.636][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-14 19:04:24.638][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-14 19:04:24.640][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-14 19:04:24.641][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-14 19:04:24.643][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-14 19:04:24.645][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-14 19:04:24.647][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-14 19:04:24.649][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-14 19:04:24.651][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-14 19:04:24.653][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-14 19:04:24.654][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-14 19:04:24.657][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-14 19:04:24.659][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-14 19:04:24.660][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-14 19:04:24.662][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-14 19:04:24.664][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-14 19:04:24.666][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-14 19:04:24.668][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-14 19:04:24.670][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-14 19:04:24.671][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-14 19:04:24.673][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-14 19:04:24.675][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-14 19:04:24.677][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-14 19:04:24.679][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-14 19:04:24.680][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-14 19:04:24.682][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-14 19:04:24.683][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-14 19:04:24.685][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-14 19:04:24.687][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-14 19:04:24.694][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-14 19:04:24.696][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-14 19:04:24.700][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:24.701][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.704][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.715][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.717][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.720][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.741][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.790][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.793][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.800][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.802][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.808][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.809][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.810][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.811][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.819][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.820][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.838][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.843][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.845][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.861][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:24.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:24.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:24.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:24.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:24.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:24.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:24.876][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-14 19:04:24.890][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:24.893][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.894][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.896][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.897][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:24.899][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.901][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-14 19:04:24.903][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.904][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.905][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-14 19:04:24.907][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:24.908][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.909][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-14 19:04:24.911][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-14 19:04:24.912][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-14 19:04:24.914][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:24.915][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:24.915][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-14 19:04:24.915][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-14 19:04:24.917][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-14 19:04:24.918][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.919][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.920][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:24.921][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:24.923][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:24.924][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:24.926][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-14 19:04:24.926][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-14 19:04:24.927][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:24.928][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:24.929][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:24.931][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:24.939][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-14 19:04:24.941][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-14 19:04:24.944][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-14 19:04:24.946][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-14 19:04:24.948][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-14 19:04:24.993][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:24.995][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-14 19:04:25.001][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:25.007][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:25.013][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:25.015][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:25.017][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-14 19:04:25.018][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-14 19:04:25.020][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-14 19:04:25.020][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-14 19:04:25.021][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:25.022][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:25.024][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-14 19:04:25.025][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-14 19:04:25.026][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:25.060][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:25.062][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:25.063][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:25.065][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:25.067][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:25.068][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-14 19:04:25.078][biodb::testThat]
biodb.INFO [2025-02-14 19:04:25.080][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2025-02-14 19:04:25.081][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:25.082][biodb::testThat]
biodb.TRACE[2025-02-14 19:04:25.088][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2025-02-14 19:04:25.090][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:25.095][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:25.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:25.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:25.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:25.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:25.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:25.118][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:25.120][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:25.134][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.135][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.136][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.138][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.161][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.163][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.164][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.202][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.208][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.210][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.211][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.212][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.219][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.221][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.222][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.223][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.232][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.234][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.236][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.242][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.244][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.245][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.246][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.248][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.253][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.254][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.255][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.256][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.258][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.265][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.279][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.287][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.288][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.289][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.291][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.299][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.300][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.301][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.308][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:25.309][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:25.311][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.312][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:25.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:25.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.319][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:25.320][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:25.321][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.323][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.330][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.331][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.352][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.353][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.354][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.356][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.357][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.363][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:25.364][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:25.365][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.367][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:25.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:25.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.374][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:25.375][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:25.376][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.378][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.385][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:25.386][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.388][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.389][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:25.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.466][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.471][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:25.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.475][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.480][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.485][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:25.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:25.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.505][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:25.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:25.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.548][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:25.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.565][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:25.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:25.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.570][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:25.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:25.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:25.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:25.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:25.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:25.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:25.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:25.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:25.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.594][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:25.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:25.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:25.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:25.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.636][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.645][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:25.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:25.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.701][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.706][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.711][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:25.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:25.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:25.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.721][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:25.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:25.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.726][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:25.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:25.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.731][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:25.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.749][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:25.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:25.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.784][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.789][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:25.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:25.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.798][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.803][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.812][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.843][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:25.847][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-14 19:04:25.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-14 19:04:25.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-14 19:04:25.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.854][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-14 19:04:25.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-14 19:04:25.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.859][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-14 19:04:25.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-14 19:04:25.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.864][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-14 19:04:25.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-14 19:04:25.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.898][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.942][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.948][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.953][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:25.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.985][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.987][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.988][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.989][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:25.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:25.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:25.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:25.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.006][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.011][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.015][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.028][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.029][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.030][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.031][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.032][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.052][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.057][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.062][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.063][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.065][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.103][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.103][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.105][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.141][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.157][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.158][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.159][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.161][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.179][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.184][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.189][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.195][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.196][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.197][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.199][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:26.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:26.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:26.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:26.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.226][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:26.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:26.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.231][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:26.232][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:26.233][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.243][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:26.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:26.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.258][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:26.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:26.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.264][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:26.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:26.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.269][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:26.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:26.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.274][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:26.276][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:26.277][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.279][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:26.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:26.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.301][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:26.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:26.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:26.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.317][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:26.319][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:26.320][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.321][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.338][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.347][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.351][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.352][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.353][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.354][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.355][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.378][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.389][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.390][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.390][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.392][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.421][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.422][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.424][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.425][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.462][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.463][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.494][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.495][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.496][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.497][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:26.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:26.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:26.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:26.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:26.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:26.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.529][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:26.530][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:26.530][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.532][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:26.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:26.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:26.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:26.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:26.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:26.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:26.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:26.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:26.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:26.566][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.567][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:26.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:26.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.598][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.599][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.601][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.602][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.622][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.628][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.634][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.639][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.640][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.641][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.642][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.644][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.657][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:26.659][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:26.660][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.661][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.668][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.669][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.670][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.671][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.677][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.678][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:26.679][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.680][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.687][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.688][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:26.689][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.690][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.696][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.698][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:26.699][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.700][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.706][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.718][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:26.720][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.721][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.730][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.732][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:26.733][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.735][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.742][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.743][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:26.744][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.745][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.751][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:26.753][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:26.754][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.755][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.762][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:26.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:26.765][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.766][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.773][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:26.775][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:26.777][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.778][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.787][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:26.789][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.790][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.797][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.799][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:26.800][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.801][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:26.811][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.813][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.820][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:26.821][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:26.823][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.824][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.837][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.839][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:26.840][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.841][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.848][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.850][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.851][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.853][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.859][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:26.860][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:26.862][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.863][ef$get] fields variable is a list.
biodb.INFO [2025-02-14 19:04:26.875][biodb::testThat]
biodb.INFO [2025-02-14 19:04:26.877][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2025-02-14 19:04:26.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:26.879][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:26.899][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-14 19:04:26.908][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-14 19:04:26.912][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:26.915][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-14 19:04:26.917][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-14 19:04:26.919][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-14 19:04:26.922][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-14 19:04:26.923][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-14 19:04:26.953][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:26.955][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:26.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:26.959][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:26.960][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:26.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:26.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:26.970][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:26.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:26.976][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:26.977][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:26.978][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.979][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:26.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:26.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.986][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.988][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.989][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.990][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.992][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:26.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:26.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:26.998][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:26.999][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.000][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.001][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.003][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.008][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.010][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.011][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.012][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.014][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.019][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.020][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.021][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.022][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.024][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.039][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.041][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.043][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.044][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.046][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.052][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.053][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.054][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.055][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.057][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.063][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.066][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.073][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.075][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.076][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.082][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.084][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.085][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.086][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.093][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:27.094][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:27.096][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.097][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.098][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:27.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:27.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.103][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:27.104][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:27.106][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.107][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:27.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:27.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.113][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.115][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.116][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.117][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.124][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.125][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.126][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.133][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.134][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.135][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.137][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.142][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.143][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.145][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.146][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.147][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.152][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:27.153][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:27.155][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.156][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:27.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:27.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.163][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:27.164][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.165][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.166][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.168][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:27.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.187][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.192][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.196][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:27.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.200][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.211][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.216][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:27.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.229][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:27.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:27.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:27.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:27.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.300][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.304][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:27.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:27.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:27.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:27.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:27.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:27.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:27.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:27.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.327][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:27.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:27.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:27.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:27.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.337][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.352][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.357][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.362][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:27.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:27.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.389][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.407][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:27.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.417][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.422][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.427][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:27.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:27.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:27.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:27.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.446][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:27.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.456][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.491][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:27.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:27.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.512][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:27.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:27.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.547][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-14 19:04:27.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2025-02-14 19:04:27.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2025-02-14 19:04:27.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2025-02-14 19:04:27.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2025-02-14 19:04:27.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2025-02-14 19:04:27.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2025-02-14 19:04:27.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-14 19:04:27.580][biodb::testThat]
biodb.INFO [2025-02-14 19:04:27.582][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2025-02-14 19:04:27.583][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:27.584][biodb::testThat]
biodb.TRACE[2025-02-14 19:04:27.588][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.589][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.592][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.594][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2025-02-14 19:04:27.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.648][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2025-02-14 19:04:27.649][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-14 19:04:27.650][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-14 19:04:27.651][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-14 19:04:27.654][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:27.656][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:27.657][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:27.659][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:27.660][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:27.662][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:27.664][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:27.666][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:27.667][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:27.669][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:27.670][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-14 19:04:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.692][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:27.693][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:27.694][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-14 19:04:27.712][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.714][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.715][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.716][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.718][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2025-02-14 19:04:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.752][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.758][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.766][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2025-02-14 19:04:27.840][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-14 19:04:27.842][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-14 19:04:27.843][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2025-02-14 19:04:27.863][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:27.865][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:27.867][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:27.868][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:27.870][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:27.891][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:27.893][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:27.894][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:27.896][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:27.897][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:27.899][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-14 19:04:27.902][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.915][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.921][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.926][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:27.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:27.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.930][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:27.931][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:27.932][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2025-02-14 19:04:27.948][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.965][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.966][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.967][ef$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:27.972][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2025-02-14 19:04:27.992][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:27.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:27.997][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:27.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.002][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:28.011][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2025-02-14 19:04:28.014][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2025-02-14 19:04:28.015][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-14 19:04:28.016][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2025-02-14 19:04:28.019][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:28.021][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:28.023][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:28.024][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:28.026][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:28.027][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:28.028][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:28.029][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:28.031][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:28.032][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:28.033][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-14 19:04:28.035][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.040][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.044][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.049][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:28.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:28.053][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:28.055][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:28.056][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2025-02-14 19:04:28.081][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.082][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2025-02-14 19:04:28.084][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:28.085][biodb::testThat]
biodb.TRACE[2025-02-14 19:04:28.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.119][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.132][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:28.153][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2025-02-14 19:04:28.155][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-14 19:04:28.156][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2025-02-14 19:04:28.158][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:28.160][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:28.162][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:28.164][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:28.165][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:28.167][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:28.169][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:28.170][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:28.171][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:28.173][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:28.174][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-14 19:04:28.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.182][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.187][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:28.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:28.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:28.198][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:28.199][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2025-02-14 19:04:28.223][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.225][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2025-02-14 19:04:28.227][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:28.228][biodb::testThat]
biodb.TRACE[2025-02-14 19:04:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.269][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-14 19:04:28.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-14 19:04:28.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.274][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-14 19:04:28.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-14 19:04:28.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.341][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.347][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2025-02-14 19:04:28.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2025-02-14 19:04:28.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2025-02-14 19:04:28.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:28.357][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2025-02-14 19:04:28.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2025-02-14 19:04:28.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:28.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-14 19:04:28.370][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.372][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2025-02-14 19:04:28.373][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:28.374][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.385][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.386][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2025-02-14 19:04:28.388][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:28.390][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.403][biodb::testThat]
biodb.INFO [2025-02-14 19:04:28.405][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2025-02-14 19:04:28.406][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:28.408][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:28.414][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2025-02-14 19:04:35.749][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2025-02-14 19:04:35.792][biodb::testThat]
biodb.INFO [2025-02-14 19:04:35.794][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2025-02-14 19:04:35.795][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:35.796][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:36.413][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2025-02-14 19:04:36.455][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:36.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:36.458][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.460][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.461][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:36.463][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.465][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.466][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:36.468][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:36.469][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.470][ef$get] fields variable is a list.
biodb.INFO [2025-02-14 19:04:36.472][biodb::testThat]
biodb.INFO [2025-02-14 19:04:36.474][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2025-02-14 19:04:36.475][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:36.476][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:36.478][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2025-02-14 19:04:36.549][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-14 19:04:36.551][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.553][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-14 19:04:36.577][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2025-02-14 19:04:36.579][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-14 19:04:36.581][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-14 19:04:36.582][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-14 19:04:36.584][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.585][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:36.587][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:36.589][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:36.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:36.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:36.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:36.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:36.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:36.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:36.606][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.611][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.622][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:36.680][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-14 19:04:36.681][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2025-02-14 19:04:36.703][biodb::testThat]
biodb.INFO [2025-02-14 19:04:36.704][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2025-02-14 19:04:36.706][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:36.707][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:36.717][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2025-02-14 19:04:36.719][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2025-02-14 19:04:36.720][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-14 19:04:36.722][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.724][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-14 19:04:36.726][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2025-02-14 19:04:36.728][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2025-02-14 19:04:36.730][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2025-02-14 19:04:36.731][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-14 19:04:36.732][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.734][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:36.736][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:36.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:36.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:36.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:36.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:36.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:36.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:36.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.757][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:36.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.761][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:36.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:36.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:36.791][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2025-02-14 19:04:36.792][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2025-02-14 19:04:36.793][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2025-02-14 19:04:36.813][biodb::testThat]
biodb.INFO [2025-02-14 19:04:36.814][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2025-02-14 19:04:36.816][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:36.825][biodb::testThat]
biodb.INFO [2025-02-14 19:04:36.855][biodb::testThat]
biodb.INFO [2025-02-14 19:04:36.857][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2025-02-14 19:04:36.858][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:36.860][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:36.863][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.865][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.867][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:36.869][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.870][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:36.872][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:36.873][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:36.874][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:36.876][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2025-02-14 19:04:36.887][biodb::testThat]
biodb.INFO [2025-02-14 19:04:36.889][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2025-02-14 19:04:36.890][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:36.891][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:36.894][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.896][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.898][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:36.899][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:36.901][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:36.902][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:36.904][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:36.905][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:36.906][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2025-02-14 19:04:36.919][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:36.921][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:36.922][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.923][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.925][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:36.926][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:36.927][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.929][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:36.930][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:36.932][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:36.933][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:36.934][ef$get] fields variable is a list.
biodb.INFO [2025-02-14 19:04:36.935][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-14 19:04:36.936][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-14 19:04:36.947][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-14 19:04:36.949][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-14 19:04:36.950][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:36.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:36.952][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:36.954][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:36.954][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:36.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-14 19:04:36.961][biodb::testContext]
biodb.INFO [2025-02-14 19:04:36.962][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:36.964][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2025-02-14 19:04:36.965][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:36.966][biodb::testContext]
biodb.INFO [2025-02-14 19:04:36.973][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-14 19:04:36.975][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-14 19:04:36.987][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:36.989][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-14 19:04:36.991][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-14 19:04:36.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:36.993][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:36.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:36.996][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-14 19:04:36.997][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-14 19:04:36.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:36.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.001][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-14 19:04:37.003][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-14 19:04:37.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.007][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-14 19:04:37.008][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-14 19:04:37.010][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-14 19:04:37.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.014][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-14 19:04:37.015][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-14 19:04:37.017][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-14 19:04:37.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.021][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-14 19:04:37.022][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-14 19:04:37.024][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.027][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-14 19:04:37.028][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-14 19:04:37.029][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-14 19:04:37.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.033][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-14 19:04:37.035][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-14 19:04:37.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.040][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-14 19:04:37.041][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-14 19:04:37.043][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-14 19:04:37.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.048][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-14 19:04:37.049][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-14 19:04:37.051][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-14 19:04:37.052][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-14 19:04:37.054][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-14 19:04:37.055][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-14 19:04:37.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.060][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-14 19:04:37.061][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-14 19:04:37.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.066][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-14 19:04:37.068][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-14 19:04:37.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.073][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-14 19:04:37.074][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-14 19:04:37.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.078][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-14 19:04:37.080][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-14 19:04:37.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.084][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-14 19:04:37.085][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-14 19:04:37.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.090][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-14 19:04:37.091][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-14 19:04:37.117][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-14 19:04:37.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.121][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.123][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-14 19:04:37.125][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-14 19:04:37.126][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-14 19:04:37.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.132][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-14 19:04:37.134][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.135][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-14 19:04:37.136][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.137][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:37.139][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.140][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.142][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.143][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.145][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-14 19:04:37.146][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:37.147][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.148][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-14 19:04:37.156][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:37.157][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.159][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.161][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:37.161][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-14 19:04:37.161][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-14 19:04:37.161][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-14 19:04:37.161][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-14 19:04:37.162][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:37.163][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.164][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.166][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:37.167][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.168][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.170][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.171][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.172][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:37.173][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:37.174][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.176][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.177][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-14 19:04:37.179][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.180][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-14 19:04:37.181][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:37.183][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.185][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.186][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.187][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.188][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-14 19:04:37.190][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:37.191][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.192][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-14 19:04:37.193][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:37.194][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.196][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.197][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:37.197][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-14 19:04:37.197][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-14 19:04:37.197][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-14 19:04:37.197][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-14 19:04:37.199][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:37.200][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.201][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.203][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:37.204][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.205][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.206][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.207][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.208][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:37.209][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:37.210][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.211][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.213][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-14 19:04:37.215][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.217][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-14 19:04:37.218][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.219][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:37.220][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.221][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.223][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.224][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.225][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-14 19:04:37.227][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:37.228][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.229][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-14 19:04:37.230][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:37.232][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.233][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.234][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.235][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:37.237][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.238][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.239][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:37.240][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.243][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.244][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.245][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:37.247][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:37.248][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.249][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.251][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-14 19:04:37.253][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.254][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-14 19:04:37.255][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.257][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:37.258][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.259][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.261][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.262][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.263][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-14 19:04:37.265][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:37.266][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.267][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-14 19:04:37.268][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:37.269][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.270][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.272][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.273][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:37.274][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.275][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.276][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:37.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.280][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.281][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:37.282][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:37.283][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.284][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.286][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:37.293][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.342][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.346][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.352][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.354][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.368][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.374][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.386][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-14 19:04:37.387][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-14 19:04:37.389][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-14 19:04:37.391][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-14 19:04:37.393][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-14 19:04:37.394][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-14 19:04:37.396][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-14 19:04:37.398][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-14 19:04:37.400][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-14 19:04:37.402][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-14 19:04:37.404][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-14 19:04:37.405][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-14 19:04:37.407][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-14 19:04:37.409][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-14 19:04:37.410][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-14 19:04:37.412][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-14 19:04:37.413][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-14 19:04:37.415][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-14 19:04:37.417][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-14 19:04:37.426][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-14 19:04:37.428][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-14 19:04:37.430][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-14 19:04:37.432][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-14 19:04:37.434][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-14 19:04:37.436][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-14 19:04:37.438][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-14 19:04:37.440][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-14 19:04:37.442][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-14 19:04:37.444][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-14 19:04:37.445][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-14 19:04:37.447][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-14 19:04:37.449][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-14 19:04:37.450][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-14 19:04:37.452][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-14 19:04:37.453][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-14 19:04:37.455][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-14 19:04:37.457][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-14 19:04:37.458][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-14 19:04:37.460][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-14 19:04:37.462][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-14 19:04:37.463][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-14 19:04:37.465][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-14 19:04:37.466][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-14 19:04:37.468][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-14 19:04:37.470][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-14 19:04:37.471][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-14 19:04:37.473][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-14 19:04:37.475][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-14 19:04:37.476][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-14 19:04:37.478][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-14 19:04:37.480][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-14 19:04:37.482][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-14 19:04:37.484][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-14 19:04:37.485][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-14 19:04:37.487][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-14 19:04:37.489][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-14 19:04:37.491][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-14 19:04:37.492][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-14 19:04:37.494][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-14 19:04:37.496][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-14 19:04:37.498][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-14 19:04:37.500][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-14 19:04:37.501][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-14 19:04:37.503][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-14 19:04:37.505][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-14 19:04:37.507][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-14 19:04:37.508][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-14 19:04:37.510][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-14 19:04:37.512][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-14 19:04:37.513][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-14 19:04:37.515][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-14 19:04:37.517][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-14 19:04:37.519][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-14 19:04:37.521][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-14 19:04:37.523][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-14 19:04:37.524][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-14 19:04:37.526][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-14 19:04:37.528][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-14 19:04:37.530][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-14 19:04:37.531][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-14 19:04:37.533][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-14 19:04:37.534][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-14 19:04:37.536][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-14 19:04:37.538][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-14 19:04:37.540][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-14 19:04:37.542][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:37.543][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.545][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.588][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.596][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.598][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.604][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.619][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.620][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.637][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.643][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.648][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.659][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.661][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.664][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:37.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:37.694][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-14 19:04:37.703][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:37.706][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.707][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.709][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.710][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:37.711][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.713][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-14 19:04:37.714][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.715][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.717][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-14 19:04:37.718][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:37.719][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.720][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-14 19:04:37.722][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-14 19:04:37.723][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-14 19:04:37.725][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:37.726][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:37.726][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-14 19:04:37.726][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-14 19:04:37.727][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-14 19:04:37.729][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.730][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.731][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:37.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:37.733][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:37.734][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:37.736][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-14 19:04:37.736][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-14 19:04:37.737][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:37.738][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:37.740][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:37.741][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:37.743][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-14 19:04:37.745][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-14 19:04:37.747][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-14 19:04:37.749][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-14 19:04:37.751][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-14 19:04:37.755][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:37.757][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-14 19:04:37.758][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:37.760][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:37.761][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:37.763][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:37.764][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-14 19:04:37.765][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-14 19:04:37.766][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-14 19:04:37.766][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-14 19:04:37.768][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:37.769][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:37.770][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-14 19:04:37.771][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-14 19:04:37.772][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:37.774][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:37.775][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:37.777][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:37.779][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:37.780][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:37.782][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-14 19:04:37.784][biodb::testThat]
biodb.INFO [2025-02-14 19:04:37.785][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2025-02-14 19:04:37.786][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:37.787][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:37.792][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:37.794][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:37.796][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:37.798][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:37.800][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:37.801][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:37.803][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:37.804][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:37.805][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:37.809][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2025-02-14 19:04:37.818][biodb::testThat]
biodb.INFO [2025-02-14 19:04:37.819][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2025-02-14 19:04:37.821][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:37.822][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:37.825][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-14 19:04:37.826][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-14 19:04:37.828][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:37.830][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-14 19:04:37.833][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-14 19:04:37.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-14 19:04:37.837][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-14 19:04:37.839][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-14 19:04:37.840][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:37.842][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:37.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:37.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:37.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:37.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:37.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:37.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:37.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:37.871][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:37.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:37.874][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.875][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:37.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:37.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.882][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:37.883][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:37.884][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.885][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.892][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:37.894][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:37.895][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.896][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.898][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:37.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:37.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.903][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:37.904][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:37.905][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.906][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.908][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:37.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:37.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.913][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:37.914][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:37.915][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.916][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.923][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:37.925][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:37.926][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.927][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.929][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:37.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.934][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:37.935][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:37.937][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.938][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.940][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:37.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:37.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.945][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:37.946][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:37.947][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.949][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.956][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:37.958][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:37.959][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.960][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:37.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:37.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.968][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:37.969][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:37.971][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.972][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:37.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:37.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.979][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:37.980][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:37.981][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.982][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.984][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:37.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:37.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.989][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:37.991][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:37.992][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:37.993][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:37.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:37.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:37.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.008][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.012][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.013][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.022][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.023][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.029][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.031][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.032][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.033][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.034][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.039][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:38.041][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:38.042][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.043][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:38.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:38.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.051][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:38.052][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:38.053][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.054][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.056][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:38.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:38.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.062][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:38.063][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.064][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.065][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.089][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:38.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:38.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.094][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:38.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:38.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.100][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:38.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:38.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.105][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:38.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:38.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.110][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:38.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:38.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.115][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:38.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:38.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:38.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:38.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:38.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:38.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:38.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:38.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.142][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:38.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.156][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:38.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:38.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:38.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:38.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:38.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:38.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:38.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:38.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:38.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:38.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:38.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:38.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:38.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:38.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.211][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:38.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:38.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.216][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:38.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:38.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:38.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:38.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.227][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:38.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:38.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.232][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:38.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:38.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:38.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:38.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:38.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:38.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:38.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:38.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:38.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:38.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.258][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.263][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:38.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:38.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.279][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:38.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:38.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.285][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:38.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:38.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.290][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:38.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.320][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:38.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:38.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:38.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:38.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:38.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:38.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.345][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:38.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:38.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.350][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:38.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:38.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.356][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:38.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:38.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.361][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:38.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:38.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:38.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:38.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:38.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.376][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:38.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.381][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:38.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:38.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.410][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.415][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:38.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:38.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.432][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:38.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:38.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.437][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:38.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:38.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.456][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:38.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:38.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:38.491][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-14 19:04:38.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:38.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:38.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:38.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:38.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2025-02-14 19:04:38.517][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-14 19:04:38.519][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-14 19:04:38.521][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-14 19:04:38.522][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-14 19:04:38.523][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:38.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:38.526][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.528][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-14 19:04:38.534][biodb::testContext]
biodb.INFO [2025-02-14 19:04:38.536][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:38.537][biodb::testContext] Test context - Test search of entries
biodb.INFO [2025-02-14 19:04:38.538][biodb::testContext] ********************************************************************************
biodb.INFO [2025-02-14 19:04:38.539][biodb::testContext]
biodb.INFO [2025-02-14 19:04:38.545][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.15.0.
biodb.DEBUG[2025-02-14 19:04:38.547][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2025-02-14 19:04:38.553][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:38.555][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2025-02-14 19:04:38.556][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2025-02-14 19:04:38.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.561][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2025-02-14 19:04:38.562][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2025-02-14 19:04:38.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.567][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2025-02-14 19:04:38.569][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2025-02-14 19:04:38.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.572][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.573][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2025-02-14 19:04:38.575][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2025-02-14 19:04:38.576][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2025-02-14 19:04:38.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.581][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2025-02-14 19:04:38.583][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2025-02-14 19:04:38.584][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2025-02-14 19:04:38.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.589][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2025-02-14 19:04:38.590][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2025-02-14 19:04:38.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.602][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.603][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2025-02-14 19:04:38.605][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2025-02-14 19:04:38.606][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2025-02-14 19:04:38.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.612][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2025-02-14 19:04:38.613][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2025-02-14 19:04:38.614][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.617][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2025-02-14 19:04:38.618][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2025-02-14 19:04:38.619][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2025-02-14 19:04:38.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.623][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2025-02-14 19:04:38.624][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2025-02-14 19:04:38.625][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2025-02-14 19:04:38.626][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2025-02-14 19:04:38.627][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2025-02-14 19:04:38.628][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2025-02-14 19:04:38.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.632][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2025-02-14 19:04:38.633][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2025-02-14 19:04:38.634][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.638][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2025-02-14 19:04:38.639][self$set] Set key entries.sep to "|".
biodb.DEBUG[2025-02-14 19:04:38.641][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.644][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2025-02-14 19:04:38.645][self$set] Set key offline to FALSE.
biodb.DEBUG[2025-02-14 19:04:38.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.650][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2025-02-14 19:04:38.651][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2025-02-14 19:04:38.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.655][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2025-02-14 19:04:38.656][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2025-02-14 19:04:38.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.661][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2025-02-14 19:04:38.663][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2025-02-14 19:04:38.689][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2025-02-14 19:04:38.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.695][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2025-02-14 19:04:38.696][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2025-02-14 19:04:38.698][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2025-02-14 19:04:38.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.703][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2025-02-14 19:04:38.705][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.707][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2025-02-14 19:04:38.708][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.710][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:38.711][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.712][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.713][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.715][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.716][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-14 19:04:38.717][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:38.719][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.720][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2025-02-14 19:04:38.722][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:38.723][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.724][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.726][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:38.726][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-14 19:04:38.726][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-14 19:04:38.726][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-14 19:04:38.726][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-14 19:04:38.727][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:38.728][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.729][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.731][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:38.732][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.733][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.735][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.736][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.737][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:38.738][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:38.739][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.740][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.742][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2025-02-14 19:04:38.745][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.746][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2025-02-14 19:04:38.747][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.749][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:38.750][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.751][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.753][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.754][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.763][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-14 19:04:38.765][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:38.766][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.768][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2025-02-14 19:04:38.770][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:38.771][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.772][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.774][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:38.774][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2025-02-14 19:04:38.774][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2025-02-14 19:04:38.774][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2025-02-14 19:04:38.774][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2025-02-14 19:04:38.775][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:38.777][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.778][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.779][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:38.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.782][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.783][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.784][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.785][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:38.787][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:38.788][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.790][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.791][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2025-02-14 19:04:38.793][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.795][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2025-02-14 19:04:38.796][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.797][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:38.798][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.800][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.801][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.803][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.804][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2025-02-14 19:04:38.805][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:38.807][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.808][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2025-02-14 19:04:38.809][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:38.811][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.812][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.813][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.815][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:38.816][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.818][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:38.820][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.820][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.822][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.823][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.824][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:38.825][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:38.826][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.828][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.829][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2025-02-14 19:04:38.831][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.833][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2025-02-14 19:04:38.834][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.836][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:38.836][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.838][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.839][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.840][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.842][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2025-02-14 19:04:38.843][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:38.844][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.846][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2025-02-14 19:04:38.847][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:38.849][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.850][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:38.851][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.853][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2025-02-14 19:04:38.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.857][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:38.858][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:38.859][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:38.861][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:38.862][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.863][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:38.864][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:38.865][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:38.867][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:38.868][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:38.869][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.878][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.915][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.932][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.933][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.934][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.944][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.948][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.949][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.969][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:38.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:38.977][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:38.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:38.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:38.980][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2025-02-14 19:04:38.982][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2025-02-14 19:04:38.984][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2025-02-14 19:04:38.986][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2025-02-14 19:04:38.988][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2025-02-14 19:04:38.990][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-14 19:04:38.992][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2025-02-14 19:04:38.994][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2025-02-14 19:04:38.995][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2025-02-14 19:04:38.997][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-14 19:04:38.999][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-14 19:04:39.001][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2025-02-14 19:04:39.003][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2025-02-14 19:04:39.005][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2025-02-14 19:04:39.007][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2025-02-14 19:04:39.009][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-14 19:04:39.011][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2025-02-14 19:04:39.013][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2025-02-14 19:04:39.015][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2025-02-14 19:04:39.017][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2025-02-14 19:04:39.019][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2025-02-14 19:04:39.021][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2025-02-14 19:04:39.022][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2025-02-14 19:04:39.024][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2025-02-14 19:04:39.026][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2025-02-14 19:04:39.027][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2025-02-14 19:04:39.029][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2025-02-14 19:04:39.031][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2025-02-14 19:04:39.032][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2025-02-14 19:04:39.034][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2025-02-14 19:04:39.036][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2025-02-14 19:04:39.046][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2025-02-14 19:04:39.048][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2025-02-14 19:04:39.051][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2025-02-14 19:04:39.053][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2025-02-14 19:04:39.054][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2025-02-14 19:04:39.056][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2025-02-14 19:04:39.058][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2025-02-14 19:04:39.060][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2025-02-14 19:04:39.062][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2025-02-14 19:04:39.064][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2025-02-14 19:04:39.065][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2025-02-14 19:04:39.067][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2025-02-14 19:04:39.069][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2025-02-14 19:04:39.070][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2025-02-14 19:04:39.072][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2025-02-14 19:04:39.074][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2025-02-14 19:04:39.076][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2025-02-14 19:04:39.078][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2025-02-14 19:04:39.080][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2025-02-14 19:04:39.081][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2025-02-14 19:04:39.083][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2025-02-14 19:04:39.085][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2025-02-14 19:04:39.087][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2025-02-14 19:04:39.089][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2025-02-14 19:04:39.091][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2025-02-14 19:04:39.093][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2025-02-14 19:04:39.095][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2025-02-14 19:04:39.096][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2025-02-14 19:04:39.098][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2025-02-14 19:04:39.100][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2025-02-14 19:04:39.102][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2025-02-14 19:04:39.104][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2025-02-14 19:04:39.105][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2025-02-14 19:04:39.107][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2025-02-14 19:04:39.109][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2025-02-14 19:04:39.112][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2025-02-14 19:04:39.115][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2025-02-14 19:04:39.117][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2025-02-14 19:04:39.120][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2025-02-14 19:04:39.122][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2025-02-14 19:04:39.124][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2025-02-14 19:04:39.126][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2025-02-14 19:04:39.128][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2025-02-14 19:04:39.130][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2025-02-14 19:04:39.131][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2025-02-14 19:04:39.133][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2025-02-14 19:04:39.135][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2025-02-14 19:04:39.137][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2025-02-14 19:04:39.139][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2025-02-14 19:04:39.141][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2025-02-14 19:04:39.143][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2025-02-14 19:04:39.145][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2025-02-14 19:04:39.147][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2025-02-14 19:04:39.150][initialize] This is biodb version 1.15.0.
biodb.DEBUG[2025-02-14 19:04:39.151][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2025-02-14 19:04:39.152][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.155][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.179][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.190][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.211][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.219][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.242][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.246][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.265][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.271][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.274][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.284][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.290][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.290][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.295][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.296][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.304][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.306][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2025-02-14 19:04:39.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:39.322][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2025-02-14 19:04:39.324][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:39.327][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:39.328][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2025-02-14 19:04:39.329][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:39.331][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2025-02-14 19:04:39.332][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:39.333][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2025-02-14 19:04:39.334][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:39.343][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2025-02-14 19:04:39.344][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2025-02-14 19:04:39.346][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2025-02-14 19:04:39.347][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:39.349][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2025-02-14 19:04:39.350][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2025-02-14 19:04:39.351][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2025-02-14 19:04:39.353][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2025-02-14 19:04:39.354][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2025-02-14 19:04:39.354][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2025-02-14 19:04:39.354][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2025-02-14 19:04:39.355][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2025-02-14 19:04:39.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:39.358][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:39.359][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2025-02-14 19:04:39.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2025-02-14 19:04:39.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2025-02-14 19:04:39.363][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2025-02-14 19:04:39.364][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-14 19:04:39.364][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2025-02-14 19:04:39.365][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:39.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:39.367][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2025-02-14 19:04:39.369][self$setPropertyValue]
biodb.DEBUG[2025-02-14 19:04:39.370][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2025-02-14 19:04:39.372][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2025-02-14 19:04:39.374][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2025-02-14 19:04:39.376][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2025-02-14 19:04:39.378][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2025-02-14 19:04:39.383][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:39.384][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2025-02-14 19:04:39.386][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:39.388][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:39.390][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:39.391][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:39.393][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2025-02-14 19:04:39.394][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2025-02-14 19:04:39.396][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2025-02-14 19:04:39.396][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2025-02-14 19:04:39.397][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2025-02-14 19:04:39.398][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2025-02-14 19:04:39.400][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2025-02-14 19:04:39.401][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2025-02-14 19:04:39.402][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2025-02-14 19:04:39.404][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:39.406][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:39.407][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:39.408][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.5-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2025-02-14 19:04:39.410][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2025-02-14 19:04:39.411][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2025-02-14 19:04:39.413][biodb::testThat]
biodb.INFO [2025-02-14 19:04:39.414][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2025-02-14 19:04:39.415][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2025-02-14 19:04:39.417][biodb::testThat]
biodb.DEBUG[2025-02-14 19:04:39.419][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-14 19:04:39.421][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-14 19:04:39.422][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2025-02-14 19:04:39.426][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:39.428][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:39.430][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:39.433][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:39.434][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:39.436][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:39.438][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:39.439][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:39.441][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:39.442][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:39.443][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2025-02-14 19:04:39.445][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2025-02-14 19:04:39.447][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-14 19:04:39.449][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:39.451][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-14 19:04:39.453][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2025-02-14 19:04:39.455][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-14 19:04:39.457][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2025-02-14 19:04:39.459][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-14 19:04:39.460][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:39.462][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:39.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:39.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:39.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:39.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:39.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:39.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:39.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:39.482][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:39.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:39.492][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.494][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.495][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:39.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.501][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.503][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.504][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.505][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.513][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.514][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.515][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.517][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.518][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.524][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.525][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.527][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.528][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.537][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.538][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.540][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.542][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.546][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.548][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.549][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.551][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.558][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.560][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.561][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.563][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.565][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.570][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.573][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.574][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.582][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.584][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.585][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.587][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.595][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.596][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.598][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.599][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.601][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.607][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:39.608][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:39.610][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.611][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.618][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:39.620][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:39.621][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.622][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.624][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:39.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:39.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.630][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.631][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.632][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.634][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.642][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.649][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.652][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.653][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.660][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:39.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:39.662][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.663][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.665][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:39.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.670][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:39.671][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:39.673][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.674][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.675][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:39.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:39.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.680][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:39.682][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:39.683][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.684][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.690][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:39.691][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.693][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.694][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:39.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:39.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:39.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.722][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.733][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.738][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.743][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:39.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.758][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:39.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.768][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.787][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:39.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:39.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.843][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:39.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:39.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:39.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:39.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:39.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:39.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:39.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:39.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:39.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:39.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.890][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.895][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.906][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.911][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.917][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:39.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.922][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:39.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:39.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:39.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:39.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:39.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:39.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.975][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:39.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:39.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:39.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:39.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:39.996][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:39.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:39.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.038][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.043][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.059][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.064][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.082][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:40.118][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2025-02-14 19:04:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.134][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:40.140][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:40.141][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:40.143][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:40.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:40.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:40.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:40.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:40.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:40.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:40.157][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2025-02-14 19:04:40.159][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2025-02-14 19:04:40.161][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:40.163][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2025-02-14 19:04:40.165][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2025-02-14 19:04:40.167][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2025-02-14 19:04:40.169][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2025-02-14 19:04:40.171][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2025-02-14 19:04:40.172][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2025-02-14 19:04:40.174][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2025-02-14 19:04:40.176][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:40.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:40.178][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:40.186][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:40.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:40.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:40.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:40.194][ef$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.197][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.199][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.205][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.207][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.208][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.209][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.211][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.216][ef$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.218][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.219][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.227][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.230][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.236][ef$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.238][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.239][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.241][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.247][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.249][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.250][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.251][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.258][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.259][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.260][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.261][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.263][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.271][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.272][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.274][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.282][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.283][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.290][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.291][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.293][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.294][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.301][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.302][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.303][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.305][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.311][ef$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:40.313][ef$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:40.314][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.315][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:40.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:40.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:40.324][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.325][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.331][ef$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.333][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.334][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.343][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.344][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.350][ef$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.351][ef$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.352][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.353][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.360][ef$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.369][ef$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.371][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.373][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.375][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.381][ef$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:40.382][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:40.384][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.385][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.392][ef$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:40.393][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.394][ef$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.395][ef$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.397][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2025-02-14 19:04:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.418][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.424][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2025-02-14 19:04:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.435][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.445][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2025-02-14 19:04:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.451][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2025-02-14 19:04:40.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2025-02-14 19:04:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2025-02-14 19:04:40.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2025-02-14 19:04:40.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2025-02-14 19:04:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.539][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.544][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.549][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.560][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:40.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:40.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.564][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2025-02-14 19:04:40.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2025-02-14 19:04:40.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:40.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:40.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2025-02-14 19:04:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2025-02-14 19:04:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.605][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2025-02-14 19:04:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2025-02-14 19:04:40.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.638][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2025-02-14 19:04:40.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.682][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2025-02-14 19:04:40.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:40.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:40.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2025-02-14 19:04:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2025-02-14 19:04:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:40.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.715][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.726][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2025-02-14 19:04:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2025-02-14 19:04:40.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.749][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2025-02-14 19:04:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2025-02-14 19:04:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.766][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.771][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.782][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2025-02-14 19:04:40.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.806][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2025-02-14 19:04:40.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2025-02-14 19:04:40.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:40.834][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2025-02-14 19:04:40.835][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:40.855][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:40.856][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:40.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:40.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:40.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:40.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:40.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:40.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:40.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:40.879][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-14 19:04:40.880][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-14 19:04:40.881][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2025-02-14 19:04:40.903][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:40.905][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:40.907][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:40.909][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:40.910][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:40.912][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:40.914][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:40.915][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:40.916][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:40.917][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:40.919][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-14 19:04:40.921][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.927][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.944][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.950][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:40.969][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:40.971][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:40.973][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:40.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:40.976][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:40.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:40.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:40.988][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:40.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:40.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:40.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.010][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.016][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.022][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:41.034][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-14 19:04:41.035][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:41.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:41.038][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:41.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:41.047][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:41.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:41.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:41.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2025-02-14 19:04:41.059][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2025-02-14 19:04:41.060][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-14 19:04:41.062][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2025-02-14 19:04:41.064][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:41.066][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:41.068][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2025-02-14 19:04:41.070][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2025-02-14 19:04:41.071][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2025-02-14 19:04:41.073][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2025-02-14 19:04:41.075][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2025-02-14 19:04:41.076][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2025-02-14 19:04:41.078][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2025-02-14 19:04:41.079][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2025-02-14 19:04:41.081][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2025-02-14 19:04:41.083][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.089][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.095][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.101][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.106][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.112][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.117][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:41.123][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2025-02-14 19:04:41.124][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2025-02-14 19:04:41.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:41.127][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:41.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:41.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:41.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:41.148][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:41.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2025-02-14 19:04:41.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.157][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.162][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.167][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.172][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.177][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2025-02-14 19:04:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2025-02-14 19:04:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2025-02-14 19:04:41.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2025-02-14 19:04:41.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2025-02-14 19:04:41.188][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2025-02-14 19:04:41.189][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2025-02-14 19:04:41.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2025-02-14 19:04:41.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:41.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:41.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:41.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:41.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:41.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2025-02-14 19:04:41.215][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2025-02-14 19:04:41.217][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2025-02-14 19:04:41.218][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2025-02-14 19:04:41.219][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2025-02-14 19:04:41.220][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2025-02-14 19:04:41.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2025-02-14 19:04:41.223][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2025-02-14 19:04:41.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2025-02-14 19:04:41.225][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2025-02-14 19:04:41.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
 11.277   0.724  20.109

CHECK results for biodbHmdb on lconway

Summary

Command output

Installation output

Tests output

Example timings