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This page was generated on 2025-02-15 11:39 -0500 (Sat, 15 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4720
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4482
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4493
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4446
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 151/2295HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
beachmat.tiledb 0.99.1  (landing page)
Aaron Lun
Snapshot Date: 2025-02-14 13:40 -0500 (Fri, 14 Feb 2025)
git_url: https://git.bioconductor.org/packages/beachmat.tiledb
git_branch: devel
git_last_commit: ddcfd81
git_last_commit_date: 2024-12-17 00:57:58 -0500 (Tue, 17 Dec 2024)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino7Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    OK    OK  UNNEEDED, same version is already published

INSTALL results for beachmat.tiledb on nebbiolo1

To the developers/maintainers of the beachmat.tiledb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/beachmat.tiledb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: beachmat.tiledb
Version: 0.99.1
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL beachmat.tiledb
StartedAt: 2025-02-14 15:19:44 -0500 (Fri, 14 Feb 2025)
EndedAt: 2025-02-14 15:21:51 -0500 (Fri, 14 Feb 2025)
EllapsedTime: 126.9 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD INSTALL beachmat.tiledb
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.21-bioc/R/site-library’
* installing *source* package ‘beachmat.tiledb’ ...
** this is package ‘beachmat.tiledb’ version ‘0.99.1’
** using staged installation
checking if tiledb-R downloaded its own TileDB... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C++ compiler: ‘g++ (Ubuntu 13.3.0-6ubuntu2~24.04) 13.3.0’
using C++17
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I/usr/local/include    -fpic  -g -O2  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I/usr/local/include    -fpic  -g -O2  -DR_NO_REMAP -c initialize.cpp -o initialize.o
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:38,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array.h:38,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb:49,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include/tatami_tiledb/DenseMatrix.hpp:5,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include/tatami_tiledb/tatami_tiledb.hpp:5,
                 from initialize.cpp:3:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h: In member function ‘void tiledb::Attribute::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h:488:30: warning: ‘int32_t tiledb_attribute_dump(tiledb_ctx_t*, const tiledb_attribute_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  488 |         tiledb_attribute_dump(ctx_.get().ptr().get(), attr_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:58,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/core_interface.h:37,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/exception.h:37,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/capi_string.h:39,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h:38:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/attribute/attribute_api_external.h:309:34: note: declared here
  309 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_attribute_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h:41,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:40:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/dimension.h: In member function ‘void tiledb::Dimension::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/dimension.h:409:30: warning: ‘int32_t tiledb_dimension_dump(tiledb_ctx_t*, const tiledb_dimension_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  409 |         tiledb_dimension_dump(ctx_.get().ptr().get(), dim_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:65:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/dimension/dimension_api_external.h:292:34: note: declared here
  292 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_dimension_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h: In member function ‘void tiledb::Domain::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h:167:40: warning: ‘int32_t tiledb_domain_dump(tiledb_ctx_t*, const tiledb_domain_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  167 |     ctx.handle_error(tiledb_domain_dump(ctx.ptr().get(), domain_.get(), out));
      |                      ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:66:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/domain/domain_api_external.h:227:34: note: declared here
  227 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_domain_dump(
      |                                  ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h: In member function ‘virtual void tiledb::ArraySchema::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:170:33: warning: ‘int32_t tiledb_array_schema_dump(tiledb_ctx_t*, const tiledb_array_schema_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  170 |         tiledb_array_schema_dump(ctx.ptr().get(), schema_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:4409:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb_deprecated.h:61:34: note: declared here
   61 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_array_schema_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I/usr/local/include    -fpic  -g -O2  -DR_NO_REMAP -c load_dense.cpp -o load_dense.o
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:38,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array.h:38,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb:49,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include/tatami_tiledb/DenseMatrix.hpp:5,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include/tatami_tiledb/tatami_tiledb.hpp:5,
                 from load_dense.cpp:2:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h: In member function ‘void tiledb::Attribute::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h:488:30: warning: ‘int32_t tiledb_attribute_dump(tiledb_ctx_t*, const tiledb_attribute_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  488 |         tiledb_attribute_dump(ctx_.get().ptr().get(), attr_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:58,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/core_interface.h:37,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/exception.h:37,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/capi_string.h:39,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h:38:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/attribute/attribute_api_external.h:309:34: note: declared here
  309 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_attribute_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h:41,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:40:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/dimension.h: In member function ‘void tiledb::Dimension::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/dimension.h:409:30: warning: ‘int32_t tiledb_dimension_dump(tiledb_ctx_t*, const tiledb_dimension_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  409 |         tiledb_dimension_dump(ctx_.get().ptr().get(), dim_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:65:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/dimension/dimension_api_external.h:292:34: note: declared here
  292 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_dimension_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h: In member function ‘void tiledb::Domain::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h:167:40: warning: ‘int32_t tiledb_domain_dump(tiledb_ctx_t*, const tiledb_domain_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  167 |     ctx.handle_error(tiledb_domain_dump(ctx.ptr().get(), domain_.get(), out));
      |                      ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:66:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/domain/domain_api_external.h:227:34: note: declared here
  227 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_domain_dump(
      |                                  ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h: In member function ‘virtual void tiledb::ArraySchema::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:170:33: warning: ‘int32_t tiledb_array_schema_dump(tiledb_ctx_t*, const tiledb_array_schema_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  170 |         tiledb_array_schema_dump(ctx.ptr().get(), schema_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:4409:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb_deprecated.h:61:34: note: declared here
   61 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_array_schema_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/home/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/Rcpp/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include' -I'/home/biocbuild/bbs-3.21-bioc/R/site-library/beachmat/include' -I/usr/local/include    -fpic  -g -O2  -DR_NO_REMAP -c load_sparse.cpp -o load_sparse.o
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:38,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array.h:38,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb:49,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include/tatami_tiledb/DenseMatrix.hpp:5,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/assorthead/include/tatami_tiledb/tatami_tiledb.hpp:5,
                 from load_sparse.cpp:2:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h: In member function ‘void tiledb::Attribute::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h:488:30: warning: ‘int32_t tiledb_attribute_dump(tiledb_ctx_t*, const tiledb_attribute_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  488 |         tiledb_attribute_dump(ctx_.get().ptr().get(), attr_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:58,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/core_interface.h:37,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/exception.h:37,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/capi_string.h:39,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/attribute.h:38:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/attribute/attribute_api_external.h:309:34: note: declared here
  309 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_attribute_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h:41,
                 from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:40:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/dimension.h: In member function ‘void tiledb::Dimension::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/dimension.h:409:30: warning: ‘int32_t tiledb_dimension_dump(tiledb_ctx_t*, const tiledb_dimension_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  409 |         tiledb_dimension_dump(ctx_.get().ptr().get(), dim_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:65:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/dimension/dimension_api_external.h:292:34: note: declared here
  292 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_dimension_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h: In member function ‘void tiledb::Domain::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/domain.h:167:40: warning: ‘int32_t tiledb_domain_dump(tiledb_ctx_t*, const tiledb_domain_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  167 |     ctx.handle_error(tiledb_domain_dump(ctx.ptr().get(), domain_.get(), out));
      |                      ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:66:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/api/c_api/domain/domain_api_external.h:227:34: note: declared here
  227 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_domain_dump(
      |                                  ^~~~~~~~~~~~~~~~~~
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h: In member function ‘virtual void tiledb::ArraySchema::dump(FILE*) const’:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/array_schema.h:170:33: warning: ‘int32_t tiledb_array_schema_dump(tiledb_ctx_t*, const tiledb_array_schema_t*, FILE*)’ is deprecated [-Wdeprecated-declarations]
  170 |         tiledb_array_schema_dump(ctx.ptr().get(), schema_.get(), out));
      |         ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb.h:4409:
/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/include/tiledb/tiledb_deprecated.h:61:34: note: declared here
   61 | TILEDB_DEPRECATED_EXPORT int32_t tiledb_array_schema_dump(
      |                                  ^~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/home/biocbuild/bbs-3.21-bioc/R/lib -L/usr/local/lib -o beachmat.tiledb.so RcppExports.o initialize.o load_dense.o load_sparse.o -ltiledb -L/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/lib -L/home/biocbuild/bbs-3.21-bioc/R/site-library/tiledb/tiledb/lib -L/home/biocbuild/bbs-3.21-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.21-bioc/R/site-library/00LOCK-beachmat.tiledb/00new/beachmat.tiledb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (beachmat.tiledb)