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This page was generated on 2025-10-16 11:38 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 151/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bcSeq 1.30.0  (landing page)
Jiaxing Lin
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/bcSeq
git_branch: RELEASE_3_21
git_last_commit: d62b2d7
git_last_commit_date: 2025-04-15 11:16:21 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    OK    WARNINGS  

BUILD results for bcSeq on merida1

To the developers/maintainers of the bcSeq package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/bcSeq.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: bcSeq
Version: 1.30.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bcSeq
StartedAt: 2025-10-13 17:14:38 -0400 (Mon, 13 Oct 2025)
EndedAt: 2025-10-13 17:16:47 -0400 (Mon, 13 Oct 2025)
EllapsedTime: 128.7 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data bcSeq
###
##############################################################################
##############################################################################


* checking for file ‘bcSeq/DESCRIPTION’ ... OK
* preparing ‘bcSeq’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘bcSeq.Rnw’ using knitr
Error: processing vignette 'bcSeq.Rnw' failed with diagnostics:
Running 'texi2dvi' on 'bcSeq.tex' failed.
LaTeX errors:
! LaTeX Error: Command \textquotedbl unavailable in encoding OT1.

See the LaTeX manual or LaTeX Companion for explanation.
Type  H <return>  for immediate help.
 ...                                              
! Emergency stop.
 ...                                              
                                                  
l.18         outfile << "
                         >fake ID "<<x<< endl<<x<<endl;
!  ==> Fatal error occurred, no output PDF file produced!
--- failed re-building ‘bcSeq.Rnw’

SUMMARY: processing the following file failed:
  ‘bcSeq.Rnw’

Error: Vignette re-building failed.
Execution halted