Back to Multiple platform build/check report for BioC 3.21:   simplified   long
ABCDEFGHIJKLMNOPQR[S]TUVWXYZ

This page was generated on 2025-10-16 11:38 -0400 (Thu, 16 Oct 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.3 LTS)x86_644.5.1 (2025-06-13) -- "Great Square Root" 4833
merida1macOS 12.7.6 Montereyx86_644.5.1 RC (2025-06-05 r88288) -- "Great Square Root" 4614
kjohnson1macOS 13.7.5 Venturaarm644.5.1 Patched (2025-06-14 r88325) -- "Great Square Root" 4555
kunpeng2Linux (openEuler 24.03 LTS)aarch64R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" 4586
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1978/2341HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
SGCP 1.8.0  (landing page)
Niloofar AghaieAbiane
Snapshot Date: 2025-10-13 13:40 -0400 (Mon, 13 Oct 2025)
git_url: https://git.bioconductor.org/packages/SGCP
git_branch: RELEASE_3_21
git_last_commit: 8c38582
git_last_commit_date: 2025-04-15 13:00:46 -0400 (Tue, 15 Apr 2025)
nebbiolo1Linux (Ubuntu 24.04.3 LTS) / x86_64  OK    ERROR  skipped
merida1macOS 12.7.6 Monterey / x86_64  OK    ERROR  skippedskipped
kjohnson1macOS 13.7.5 Ventura / arm64  OK    ERROR  skippedskipped
kunpeng2Linux (openEuler 24.03 LTS) / aarch64  OK    ERROR  skipped

BUILD results for SGCP on nebbiolo1

To the developers/maintainers of the SGCP package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/SGCP.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: SGCP
Version: 1.8.0
Command: /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SGCP
StartedAt: 2025-10-15 19:53:45 -0400 (Wed, 15 Oct 2025)
EndedAt: 2025-10-15 19:54:54 -0400 (Wed, 15 Oct 2025)
EllapsedTime: 69.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.21-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data SGCP
###
##############################################################################
##############################################################################


* checking for file ‘SGCP/DESCRIPTION’ ... OK
* preparing ‘SGCP’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘SGCP.Rmd’ using rmarkdown

Quitting from SGCP.Rmd:395-398 [unnamed-chunk-7]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `print()`:
! unused argument (useS4 = FALSE)
---
Backtrace:
     ▆
  1. ├─SGCP::SGCP_ezPLOT(...)
  2. │ └─SGCP:::SGCP_plot2excel(...)
  3. │   ├─methods::show(pl)
  4. │   └─methods::show(pl)
  5. │     └─methods::showDefault(object)
  6. │       ├─base::print(object, useS4 = FALSE)
  7. │       └─base::print.default(object, useS4 = FALSE)
  8. ├─base (local) `<fn>`(x, useS4 = FALSE)
  9. └─ggplot2:::print.ggproto(x, useS4 = FALSE)
 10.   └─x$print(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'SGCP.Rmd' failed with diagnostics:
unused argument (useS4 = FALSE)
--- failed re-building ‘SGCP.Rmd’

SUMMARY: processing the following file failed:
  ‘SGCP.Rmd’

Error: Vignette re-building failed.
Execution halted